RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 CELSR3Q9NYQ7 3312 aa2.08□□□□□ -2.08
SYNE1-207ENST00000367255 FRYQ5TBA9 3013 aa2.08□□□□□ -2.08
SYNE1-207ENST00000367255 APCP25054 2843 aa2.08□□□□□ -2.08
SYNE1-207ENST00000367255 KRTAP13-3Q3SY46 172 aa2.07□□□□□ -2.08
SYNE1-207ENST00000367255 TPRXLQ17RH7 258 aa2.07□□□□□ -2.08
SYNE1-207ENST00000367255 CDH23Q9H251 3354 aa2.06□□□□□ -2.08
SYNE1-207ENST00000367255 TACC2O95359 2948 aa2.06□□□□□ -2.08
SYNE1-207ENST00000367255 TENM2Q9NT68 2774 aa2.06□□□□□ -2.08
SYNE1-207ENST00000367255 LAMA1P25391 3075 aa2.06□□□□□ -2.08
SYNE1-207ENST00000367255 DNAH14Q0VDD8 3507 aa2.06□□□□□ -2.08
SYNE1-207ENST00000367255 ZANQ9Y493 2812 aa2.06□□□□□ -2.08
SYNE1-207ENST00000367255 CFAP47Q6ZTR5 3102 aa2.06□□□□□ -2.08
SYNE1-207ENST00000367255 REV3LO60673 3130 aa2.05□□□□□ -2.08
SYNE1-207ENST00000367255 BOD1L1Q8NFC6 3051 aa2.05□□□□□ -2.08
SYNE1-207ENST00000367255 NF1P21359 2839 aa2.05□□□□□ -2.08
SYNE1-207ENST00000367255 DMXL2Q8TDJ6 3036 aa2.05□□□□□ -2.08
SYNE1-207ENST00000367255 PRO2289Q9P1D8 64 aa2.05□□□□□ -2.08
SYNE1-207ENST00000367255 KRTAP1-1Q07627 177 aa2.05□□□□□ -2.08
SYNE1-207ENST00000367255 ZZEF1O43149 2961 aa2.04□□□□□ -2.08
SYNE1-207ENST00000367255 J3QL48 77 aa2.04□□□□□ -2.08
SYNE1-207ENST00000367255 KRTAP1-3Q8IUG1 177 aa2.04□□□□□ -2.08
SYNE1-207ENST00000367255 COL6A3P12111 3177 aa2.03□□□□□ -2.08
SYNE1-207ENST00000367255 SPEGQ15772 3267 aa2.03□□□□□ -2.08
SYNE1-207ENST00000367255 A0A1B0GVY2 172 aa2.02□□□□□ -2.09
SYNE1-207ENST00000367255 KRTAP10-8P60410 259 aa2.02□□□□□ -2.09
SYNE1-207ENST00000367255 KRTAP13-4Q3LI77 160 aa2.01□□□□□ -2.09
SYNE1-207ENST00000367255 AKAP9Q99996 3911 aa2.01□□□□□ -2.09
SYNE1-207ENST00000367255 KRTAP10-1P60331 282 aa2□□□□□ -2.09
SYNE1-207ENST00000367255 KRTAP7-1Q8IUC3 87 aa2□□□□□ -2.09
SYNE1-207ENST00000367255 VCANP13611 3396 aa2□□□□□ -2.09
SYNE1-207ENST00000367255 DMDP11532 3685 aa2□□□□□ -2.09
SYNE1-207ENST00000367255 SPENQ96T58 3664 aaKnown RBP2□□□□□ -2.09
SYNE1-207ENST00000367255 SRRM2Q9UQ35 2752 aaKnown RBP2□□□□□ -2.09
SYNE1-207ENST00000367255 EYSQ5T1H1 3165 aa1.99□□□□□ -2.09
SYNE1-207ENST00000367255 KRTAP10-2P60368 255 aa1.99□□□□□ -2.09
SYNE1-207ENST00000367255 ADGRG4Q8IZF6 3080 aa1.99□□□□□ -2.09
SYNE1-207ENST00000367255 ASH1LQ9NR48 2969 aaKnown RBP1.99□□□□□ -2.09
SYNE1-207ENST00000367255 USP34Q70CQ2 3546 aa1.99□□□□□ -2.09
SYNE1-207ENST00000367255 ATMQ13315 3056 aa1.99□□□□□ -2.09
SYNE1-207ENST00000367255 PDZD2O15018 2839 aa1.99□□□□□ -2.09
SYNE1-207ENST00000367255 KRTAP12-2P59991 146 aa1.98□□□□□ -2.09
SYNE1-207ENST00000367255 TGP01266 2768 aa1.98□□□□□ -2.09
SYNE1-207ENST00000367255 CELSR2Q9HCU4 2923 aa1.98□□□□□ -2.09
SYNE1-207ENST00000367255 NBPF19A0A087WUL8 3843 aa1.98□□□□□ -2.09
SYNE1-207ENST00000367255 MXRA5Q9NR99 2828 aa1.97□□□□□ -2.09
SYNE1-207ENST00000367255 M0R2T5 61 aa1.97□□□□□ -2.09
SYNE1-207ENST00000367255 SPTBN5Q9NRC6 3674 aaKnown RBP1.97□□□□□ -2.09
SYNE1-207ENST00000367255 FBN2P35556 2912 aa1.97□□□□□ -2.09
SYNE1-207ENST00000367255 WDFY3Q8IZQ1 3526 aa1.97□□□□□ -2.09
SYNE1-207ENST00000367255 KRTAP1-5Q9BYS1 174 aa1.96□□□□□ -2.1
SYNE1-207ENST00000367255 XP32Q5T750 250 aa1.96□□□□□ -2.1
SYNE1-207ENST00000367255 LRBAP50851 2863 aa1.95□□□□□ -2.1
SYNE1-207ENST00000367255 TNRC18O15417 2968 aaPredicted RBP1.95□□□□□ -2.1
SYNE1-207ENST00000367255 LOC400499M0QZD8 3231 aa1.95□□□□□ -2.1
SYNE1-207ENST00000367255 COL12A1Q99715 3063 aa1.94□□□□□ -2.1
SYNE1-207ENST00000367255 MT3P25713 68 aa1.94□□□□□ -2.1
SYNE1-207ENST00000367255 DMXL1Q9Y485 3027 aa1.94□□□□□ -2.1
SYNE1-207ENST00000367255 DCHS2Q6V1P9 2916 aa1.94□□□□□ -2.1
SYNE1-207ENST00000367255 VWFP04275 2813 aa1.94□□□□□ -2.1
SYNE1-207ENST00000367255 FBN1P35555 2871 aaKnown RBP1.93□□□□□ -2.1
SYNE1-207ENST00000367255 CRYBG3Q68DQ2 2970 aa1.92□□□□□ -2.1
SYNE1-207ENST00000367255 KRTAP1-4P0C5Y4 121 aa1.92□□□□□ -2.1
SYNE1-207ENST00000367255 LAMA5O15230 3695 aa1.91□□□□□ -2.1
SYNE1-207ENST00000367255 MYO15AQ9UKN7 3530 aa1.91□□□□□ -2.1
SYNE1-207ENST00000367255 SMG1Q96Q15 3661 aaKnown RBP1.91□□□□□ -2.1
SYNE1-207ENST00000367255 KRTAP13-2Q52LG2 175 aa1.9□□□□□ -2.1
SYNE1-207ENST00000367255 ZFHX3Q15911 3703 aa1.89□□□□□ -2.11
SYNE1-207ENST00000367255 HRNRQ86YZ3 2850 aaPredicted RBP1.89□□□□□ -2.11
SYNE1-207ENST00000367255 KRTAP15-1Q3LI76 137 aa1.88□□□□□ -2.11
SYNE1-207ENST00000367255 ASPMQ8IZT6 3477 aa1.88□□□□□ -2.11
SYNE1-207ENST00000367255 RELNP78509 3460 aa1.86□□□□□ -2.11
SYNE1-207ENST00000367255 FBN3Q75N90 2809 aa1.86□□□□□ -2.11
SYNE1-207ENST00000367255 PKD1L1Q8TDX9 2849 aa1.86□□□□□ -2.11
SYNE1-207ENST00000367255 DCHS1Q96JQ0 3298 aa1.86□□□□□ -2.11
SYNE1-207ENST00000367255 VPS13CQ709C8 3753 aa1.85□□□□□ -2.11
SYNE1-207ENST00000367255 MUC3AQ02505 3323 aa1.85□□□□□ -2.11
SYNE1-207ENST00000367255 KRTAP12-1P59990 96 aa1.83□□□□□ -2.12
SYNE1-207ENST00000367255 OTOGQ6ZRI0 2925 aa1.83□□□□□ -2.12
SYNE1-207ENST00000367255 CELSR1Q9NYQ6 3014 aa1.8□□□□□ -2.12
SYNE1-207ENST00000367255 KRTAP10-6P60371 365 aaPredicted RBP1.8□□□□□ -2.12
SYNE1-207ENST00000367255 KRTAP3-1Q9BYR8 98 aa1.79□□□□□ -2.12
SYNE1-207ENST00000367255 MEGF8Q7Z7M0 2845 aa1.78□□□□□ -2.12
SYNE1-207ENST00000367255 CSMD1Q96PZ7 3565 aa1.77□□□□□ -2.13
SYNE1-207ENST00000367255 ZFHX4Q86UP3 3567 aa1.76□□□□□ -2.13
SYNE1-207ENST00000367255 LYSTQ99698 3801 aa1.76□□□□□ -2.13
SYNE1-207ENST00000367255 LORP23490 312 aaPredicted RBP1.76□□□□□ -2.13
SYNE1-207ENST00000367255 SPRR5A0A1B0GTR4 108 aa1.72□□□□□ -2.13
SYNE1-207ENST00000367255 KRTAP10-10P60014 251 aa1.71□□□□□ -2.14
SYNE1-207ENST00000367255 TRRAPQ9Y4A5 3859 aa1.7□□□□□ -2.14
SYNE1-207ENST00000367255 CRCT1Q9UGL9 99 aa1.7□□□□□ -2.14
SYNE1-207ENST00000367255 SVEP1Q4LDE5 3571 aa1.7□□□□□ -2.14
SYNE1-207ENST00000367255 CMYA5Q8N3K9 4069 aa1.69□□□□□ -2.14
SYNE1-207ENST00000367255 KRTAP3-2Q9BYR7 98 aa1.69□□□□□ -2.14
SYNE1-207ENST00000367255 BSNQ9UPA5 3926 aa1.67□□□□□ -2.14
SYNE1-207ENST00000367255 ANK2Q01484 3957 aa1.67□□□□□ -2.14
SYNE1-207ENST00000367255 CUBNO60494 3623 aa1.66□□□□□ -2.14
SYNE1-207ENST00000367255 KRTAP8-1Q8IUC2 63 aa1.65□□□□□ -2.15
SYNE1-207ENST00000367255 COL7A1Q02388 2944 aa1.65□□□□□ -2.15
SYNE1-207ENST00000367255 KRTAP10-12P60413 245 aa1.64□□□□□ -2.15
SYNE1-207ENST00000367255 KRTAP4-5Q9BYR2 181 aa1.63□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms