RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 MYT1Q01538 1121 aa6.68□□□□□ -1.34
SYNE1-207ENST00000367255 PELP1Q8IZL8 1130 aaKnown RBP6.47□□□□□ -1.37
SYNE1-207ENST00000367255 TTBK1Q5TCY1 1321 aaPredicted RBP6.35□□□□□ -1.39
SYNE1-207ENST00000367255 EHMT2Q96KQ7 1210 aa6.23□□□□□ -1.41
SYNE1-207ENST00000367255 DCAF8L2P0C7V8 631 aa6.04□□□□□ -1.44
SYNE1-207ENST00000367255 YTHDC1Q96MU7 727 aaKnown RBP5.99□□□□□ -1.45
SYNE1-207ENST00000367255 ZEB1P37275 1124 aaPredicted RBP5.98□□□□□ -1.45
SYNE1-207ENST00000367255 CLSPNQ9HAW4 1339 aa5.94□□□□□ -1.46
SYNE1-207ENST00000367255 PPARGC1BQ86YN6 1023 aaKnown RBP5.86□□□□□ -1.47
SYNE1-207ENST00000367255 MYT1LQ9UL68 1186 aa5.85□□□□□ -1.47
SYNE1-207ENST00000367255 CCER1Q8TC90 406 aaPredicted RBP5.84□□□□□ -1.47
SYNE1-207ENST00000367255 SUPT5HO00267 1087 aaKnown RBP5.83□□□□□ -1.48
SYNE1-207ENST00000367255 SHROOM4Q9ULL8 1493 aa5.81□□□□□ -1.48
SYNE1-207ENST00000367255 PCGF6Q9BYE7 350 aa5.79□□□□□ -1.48
SYNE1-207ENST00000367255 CENPBP07199 599 aaPredicted RBP5.72□□□□□ -1.49
SYNE1-207ENST00000367255 ACIN1Q9UKV3 1341 aaKnown RBP5.72□□□□□ -1.49
SYNE1-207ENST00000367255 FAM9AQ8IZU1 332 aaPredicted RBP5.71□□□□□ -1.5
SYNE1-207ENST00000367255 ERICH6Q7L0X2 663 aa5.7□□□□□ -1.5
SYNE1-207ENST00000367255 NISCHQ9Y2I1 1504 aa5.69□□□□□ -1.5
SYNE1-207ENST00000367255 ARID4BQ4LE39 1312 aaPredicted RBP5.64□□□□□ -1.51
SYNE1-207ENST00000367255 RANGAP1P46060 587 aaPredicted RBP5.63□□□□□ -1.51
SYNE1-207ENST00000367255 CNGB1Q14028 1251 aaPredicted RBP5.62□□□□□ -1.51
SYNE1-207ENST00000367255 LOC105371045A0A1W2PR82 267 aa5.59□□□□□ -1.52
SYNE1-207ENST00000367255 BCANQ96GW7 911 aa5.47□□□□□ -1.53
SYNE1-207ENST00000367255 NEFLP07196 543 aa5.47□□□□□ -1.53
SYNE1-207ENST00000367255 EIF5BO60841 1220 aaKnown RBP5.46□□□□□ -1.54
SYNE1-207ENST00000367255 GLIPR1L2Q4G1C9 344 aa5.44□□□□□ -1.54
SYNE1-207ENST00000367255 NEUROD1Q13562 356 aa5.42□□□□□ -1.54
SYNE1-207ENST00000367255 ANP32EQ9BTT0 268 aa5.41□□□□□ -1.54
SYNE1-207ENST00000367255 APLP2Q06481 763 aa5.39□□□□□ -1.55
SYNE1-207ENST00000367255 HRCP23327 699 aa5.39□□□□□ -1.55
SYNE1-207ENST00000367255 SCAF1Q9H7N4 1312 aaKnown RBP5.39□□□□□ -1.55
SYNE1-207ENST00000367255 SENP3-EIF4A1A0A087X0R7 540 aa5.37□□□□□ -1.55
SYNE1-207ENST00000367255 ATP1B4Q9UN42 357 aaPredicted RBP5.35□□□□□ -1.55
SYNE1-207ENST00000367255 GTF3C3Q9Y5Q9 886 aa5.35□□□□□ -1.55
SYNE1-207ENST00000367255 BCL11AQ9H165 835 aa5.34□□□□□ -1.56
SYNE1-207ENST00000367255 NCLP19338 710 aaKnown RBP5.34□□□□□ -1.56
SYNE1-207ENST00000367255 TRIM26Q12899 539 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-207ENST00000367255 ERICH6BQ5W0A0 696 aa5.33□□□□□ -1.56
SYNE1-207ENST00000367255 SLC24A1O60721 1099 aa5.31□□□□□ -1.56
SYNE1-207ENST00000367255 POLR3GLQ9BT43 218 aa5.3□□□□□ -1.56
SYNE1-207ENST00000367255 TIMELESSQ9UNS1 1208 aa5.28□□□□□ -1.56
SYNE1-207ENST00000367255 ITGAEP38570 1179 aa5.28□□□□□ -1.56
SYNE1-207ENST00000367255 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.28□□□□□ -1.56
SYNE1-207ENST00000367255 ANP32AP39687 249 aaKnown RBP5.27□□□□□ -1.57
SYNE1-207ENST00000367255 PKNOX2Q96KN3 472 aa5.27□□□□□ -1.57
SYNE1-207ENST00000367255 HNRNPUL2Q1KMD3 747 aaKnown RBP5.26□□□□□ -1.57
SYNE1-207ENST00000367255 DCAF1Q9Y4B6 1507 aa5.23□□□□□ -1.57
SYNE1-207ENST00000367255 EEA1Q15075 1411 aa5.22□□□□□ -1.57
SYNE1-207ENST00000367255 IL27Q8NEV9 243 aa5.22□□□□□ -1.57
SYNE1-207ENST00000367255 RTL5Q5HYW3 569 aaPredicted RBP5.22□□□□□ -1.57
SYNE1-207ENST00000367255 RTN4Q9NQC3 1192 aaKnown RBP5.21□□□□□ -1.58
SYNE1-207ENST00000367255 NEFMP07197 916 aa5.2□□□□□ -1.58
SYNE1-207ENST00000367255 CHIC1Q5VXU3 224 aa5.19□□□□□ -1.58
SYNE1-207ENST00000367255 DAXXQ9UER7 740 aaPredicted RBP5.19□□□□□ -1.58
SYNE1-207ENST00000367255 LAS1LQ9Y4W2 734 aaKnown RBP5.18□□□□□ -1.58
SYNE1-207ENST00000367255 IRX6P78412 446 aaPredicted RBP5.18□□□□□ -1.58
SYNE1-207ENST00000367255 CFAP44Q96MT7 982 aa5.17□□□□□ -1.58
SYNE1-207ENST00000367255 ZNF326Q5BKZ1 582 aaKnown RBP5.16□□□□□ -1.58
SYNE1-207ENST00000367255 A0A0U1RQG5 324 aaPredicted RBP5.15□□□□□ -1.58
SYNE1-207ENST00000367255 USP35Q9P2H5 1018 aa5.15□□□□□ -1.59
SYNE1-207ENST00000367255 NBR1Q14596 966 aa5.15□□□□□ -1.59
SYNE1-207ENST00000367255 TRIM44Q96DX7 344 aaPredicted RBP5.14□□□□□ -1.59
SYNE1-207ENST00000367255 ANP32BQ92688 251 aaKnown RBP5.14□□□□□ -1.59
SYNE1-207ENST00000367255 PTMSP20962 102 aa5.14□□□□□ -1.59
SYNE1-207ENST00000367255 HMGB1P09429 215 aaKnown RBP5.14□□□□□ -1.59
SYNE1-207ENST00000367255 DIEXFQ68CQ4 756 aaKnown RBP5.13□□□□□ -1.59
SYNE1-207ENST00000367255 PRKCSHP14314 528 aaPredicted RBP5.13□□□□□ -1.59
SYNE1-207ENST00000367255 HIRIP3Q9BW71 556 aaPredicted RBP5.13□□□□□ -1.59
SYNE1-207ENST00000367255 TNNT2P45379 298 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-207ENST00000367255 NPM2Q86SE8 214 aaKnown RBP5.12□□□□□ -1.59
SYNE1-207ENST00000367255 SALL2Q9Y467 1007 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-207ENST00000367255 SENP3Q9H4L4 574 aaPredicted RBP5.11□□□□□ -1.59
SYNE1-207ENST00000367255 CCDC136Q96JN2 1154 aa5.11□□□□□ -1.59
SYNE1-207ENST00000367255 NGEFQ8N5V2 710 aa5.11□□□□□ -1.59
SYNE1-207ENST00000367255 ARXQ96QS3 562 aa5.11□□□□□ -1.59
SYNE1-207ENST00000367255 BAZ1BQ9UIG0 1483 aaKnown RBP5.1□□□□□ -1.59
SYNE1-207ENST00000367255 HAP1P54257 671 aaPredicted RBP5.1□□□□□ -1.59
SYNE1-207ENST00000367255 MYO15BQ96JP2 1530 aa5.1□□□□□ -1.59
SYNE1-207ENST00000367255 ISY1Q9ULR0 285 aaKnown RBP5.09□□□□□ -1.59
SYNE1-207ENST00000367255 UBTFP17480 764 aaKnown RBP5.09□□□□□ -1.59
SYNE1-207ENST00000367255 AAMPQ13685 434 aa5.08□□□□□ -1.6
SYNE1-207ENST00000367255 MTERF4Q7Z6M4 381 aaKnown RBP5.08□□□□□ -1.6
SYNE1-207ENST00000367255 AMER1Q5JTC6 1135 aaPredicted RBP5.07□□□□□ -1.6
SYNE1-207ENST00000367255 MIER1Q8N108 512 aa5.07□□□□□ -1.6
SYNE1-207ENST00000367255 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.07□□□□□ -1.6
SYNE1-207ENST00000367255 CHMP4BQ9H444 224 aaKnown RBP5.07□□□□□ -1.6
SYNE1-207ENST00000367255 HMGB3O15347 200 aaKnown RBP5.07□□□□□ -1.6
SYNE1-207ENST00000367255 PLEKHG5O94827 1062 aa5.06□□□□□ -1.6
SYNE1-207ENST00000367255 KLHL34Q8N239 644 aa5.06□□□□□ -1.6
SYNE1-207ENST00000367255 ANO8Q9HCE9 1232 aaPredicted RBP5.06□□□□□ -1.6
SYNE1-207ENST00000367255 FKBP8Q14318 412 aa5.06□□□□□ -1.6
SYNE1-207ENST00000367255 ARID3AQ99856 593 aa5.05□□□□□ -1.6
SYNE1-207ENST00000367255 TPRNQ4KMQ1 711 aa5.05□□□□□ -1.6
SYNE1-207ENST00000367255 ZNF316A6NFI3 1004 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-207ENST00000367255 DHX8Q14562 1220 aaKnown RBP5.04□□□□□ -1.6
SYNE1-207ENST00000367255 DDRGK1Q96HY6 314 aa5.04□□□□□ -1.6
SYNE1-207ENST00000367255 TRIM41Q8WV44 630 aa5.03□□□□□ -1.6
SYNE1-207ENST00000367255 CDK11AQ9UQ88 783 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-207ENST00000367255 ZBTB7CA1YPR0 619 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms