RNA–Protein interactions for RNA: ENST00000360495.9

CCDC144A-203, Transcript of coiled-coil domain containing 144A, humanhuman

TSL 1 (best)

Gene CCDC144A, Length 5,545 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144A-203ENST00000360495 DMXL2Q8TDJ6 3036 aa6.93□□□□□ -1.3
CCDC144A-203ENST00000360495 VPS13AQ96RL7 3174 aa6.92□□□□□ -1.3
CCDC144A-203ENST00000360495 HIVEP1P15822 2718 aa6.92□□□□□ -1.3
CCDC144A-203ENST00000360495 UNC80Q8N2C7 3258 aa6.92□□□□□ -1.3
CCDC144A-203ENST00000360495 LRBAP50851 2863 aa6.92□□□□□ -1.3
CCDC144A-203ENST00000360495 UTP20O75691 2785 aaKnown RBP6.91□□□□□ -1.3
CCDC144A-203ENST00000360495 KMT2BQ9UMN6 2715 aaPredicted RBP6.9□□□□□ -1.3
CCDC144A-203ENST00000360495 NBEAQ8NFP9 2946 aa6.9□□□□□ -1.31
CCDC144A-203ENST00000360495 A0A1B0GVY2 172 aa6.89□□□□□ -1.31
CCDC144A-203ENST00000360495 XIRP2A4UGR9 3374 aa6.87□□□□□ -1.31
CCDC144A-203ENST00000360495 TACC2O95359 2948 aa6.86□□□□□ -1.31
CCDC144A-203ENST00000360495 CDH23Q9H251 3354 aa6.85□□□□□ -1.31
CCDC144A-203ENST00000360495 KRTAP13-3Q3SY46 172 aa6.84□□□□□ -1.31
CCDC144A-203ENST00000360495 CELSR3Q9NYQ7 3312 aa6.82□□□□□ -1.32
CCDC144A-203ENST00000360495 TNRC18O15417 2968 aaPredicted RBP6.82□□□□□ -1.32
CCDC144A-203ENST00000360495 KRTAP12-2P59991 146 aa6.81□□□□□ -1.32
CCDC144A-203ENST00000360495 ATMQ13315 3056 aa6.81□□□□□ -1.32
CCDC144A-203ENST00000360495 FRYLO94915 3013 aa6.79□□□□□ -1.32
CCDC144A-203ENST00000360495 TPRXLQ17RH7 258 aa6.78□□□□□ -1.32
CCDC144A-203ENST00000360495 COL12A1Q99715 3063 aa6.78□□□□□ -1.32
CCDC144A-203ENST00000360495 SZT2Q5T011 3432 aa6.76□□□□□ -1.33
CCDC144A-203ENST00000360495 NIPBLQ6KC79 2804 aaeCLIP6.75□□□□□ -1.33
CCDC144A-203ENST00000360495 TENM4Q6N022 2769 aa6.74□□□□□ -1.33
CCDC144A-203ENST00000360495 CELSR2Q9HCU4 2923 aa6.71□□□□□ -1.33
CCDC144A-203ENST00000360495 ADGRG4Q8IZF6 3080 aa6.7□□□□□ -1.34
CCDC144A-203ENST00000360495 KRTAP10-10P60014 251 aa6.69□□□□□ -1.34
CCDC144A-203ENST00000360495 TGP01266 2768 aa6.69□□□□□ -1.34
CCDC144A-203ENST00000360495 EYSQ5T1H1 3165 aa6.68□□□□□ -1.34
CCDC144A-203ENST00000360495 PRO2289Q9P1D8 64 aa6.68□□□□□ -1.34
CCDC144A-203ENST00000360495 KRTAP13-4Q3LI77 160 aa6.67□□□□□ -1.34
CCDC144A-203ENST00000360495 KRTAP12-1P59990 96 aa6.66□□□□□ -1.34
CCDC144A-203ENST00000360495 LAMA1P25391 3075 aa6.64□□□□□ -1.35
CCDC144A-203ENST00000360495 REV3LO60673 3130 aa6.63□□□□□ -1.35
CCDC144A-203ENST00000360495 COL6A3P12111 3177 aa6.63□□□□□ -1.35
CCDC144A-203ENST00000360495 BOD1L1Q8NFC6 3051 aa6.6□□□□□ -1.35
CCDC144A-203ENST00000360495 ZZEF1O43149 2961 aa6.6□□□□□ -1.35
CCDC144A-203ENST00000360495 DCHS2Q6V1P9 2916 aa6.6□□□□□ -1.35
CCDC144A-203ENST00000360495 CFAP47Q6ZTR5 3102 aa6.56□□□□□ -1.36
CCDC144A-203ENST00000360495 VCANP13611 3396 aa6.56□□□□□ -1.36
CCDC144A-203ENST00000360495 CRYBG3Q68DQ2 2970 aa6.55□□□□□ -1.36
CCDC144A-203ENST00000360495 TENM3Q9P273 2699 aa6.54□□□□□ -1.36
CCDC144A-203ENST00000360495 KRTAP3-1Q9BYR8 98 aa6.5□□□□□ -1.37
CCDC144A-203ENST00000360495 DMXL1Q9Y485 3027 aa6.5□□□□□ -1.37
CCDC144A-203ENST00000360495 ZANQ9Y493 2812 aa6.48□□□□□ -1.37
CCDC144A-203ENST00000360495 DNAH14Q0VDD8 3507 aa6.48□□□□□ -1.37
CCDC144A-203ENST00000360495 KRTAP15-1Q3LI76 137 aa6.45□□□□□ -1.38
CCDC144A-203ENST00000360495 SPTBN5Q9NRC6 3674 aaKnown RBP6.44□□□□□ -1.38
CCDC144A-203ENST00000360495 NF1P21359 2839 aa6.43□□□□□ -1.38
CCDC144A-203ENST00000360495 HRNRQ86YZ3 2850 aaPredicted RBP6.42□□□□□ -1.38
CCDC144A-203ENST00000360495 TENM1Q9UKZ4 2725 aa6.42□□□□□ -1.38
CCDC144A-203ENST00000360495 USP34Q70CQ2 3546 aa6.41□□□□□ -1.38
CCDC144A-203ENST00000360495 KRTAP10-6P60371 365 aaPredicted RBP6.39□□□□□ -1.39
CCDC144A-203ENST00000360495 INE1O15225 51 aa6.39□□□□□ -1.39
CCDC144A-203ENST00000360495 FBN2P35556 2912 aa6.36□□□□□ -1.39
CCDC144A-203ENST00000360495 TENM2Q9NT68 2774 aa6.34□□□□□ -1.39
CCDC144A-203ENST00000360495 PDZD2O15018 2839 aa6.3□□□□□ -1.4
CCDC144A-203ENST00000360495 MXRA5Q9NR99 2828 aa6.3□□□□□ -1.4
CCDC144A-203ENST00000360495 CELSR1Q9NYQ6 3014 aa6.26□□□□□ -1.41
CCDC144A-203ENST00000360495 SPEGQ15772 3267 aa6.24□□□□□ -1.41
CCDC144A-203ENST00000360495 LOC400499M0QZD8 3231 aa6.18□□□□□ -1.42
CCDC144A-203ENST00000360495 KRTAP3-2Q9BYR7 98 aa6.12□□□□□ -1.43
CCDC144A-203ENST00000360495 PKD1L1Q8TDX9 2849 aa6.09□□□□□ -1.43
CCDC144A-203ENST00000360495 VWFP04275 2813 aa6.07□□□□□ -1.44
CCDC144A-203ENST00000360495 KRTAP3-3Q9BYR6 98 aa6.05□□□□□ -1.44
CCDC144A-203ENST00000360495 OTOGQ6ZRI0 2925 aa6.04□□□□□ -1.44
CCDC144A-203ENST00000360495 MYO15AQ9UKN7 3530 aa5.98□□□□□ -1.45
CCDC144A-203ENST00000360495 DCHS1Q96JQ0 3298 aa5.98□□□□□ -1.45
CCDC144A-203ENST00000360495 KRTAP10-12P60413 245 aa5.96□□□□□ -1.46
CCDC144A-203ENST00000360495 RELNP78509 3460 aa5.95□□□□□ -1.46
CCDC144A-203ENST00000360495 SRRM2Q9UQ35 2752 aaKnown RBP5.91□□□□□ -1.46
CCDC144A-203ENST00000360495 CRCT1Q9UGL9 99 aa5.9□□□□□ -1.46
CCDC144A-203ENST00000360495 MEGF8Q7Z7M0 2845 aa5.89□□□□□ -1.47
CCDC144A-203ENST00000360495 WDFY3Q8IZQ1 3526 aa5.89□□□□□ -1.47
CCDC144A-203ENST00000360495 FBN3Q75N90 2809 aa5.88□□□□□ -1.47
CCDC144A-203ENST00000360495 KRTAP12-3P60328 96 aa5.87□□□□□ -1.47
CCDC144A-203ENST00000360495 KRTAP23-1A1A580 65 aa5.86□□□□□ -1.47
CCDC144A-203ENST00000360495 NBPF19A0A087WUL8 3843 aa5.85□□□□□ -1.47
CCDC144A-203ENST00000360495 ZFHX4Q86UP3 3567 aa5.83□□□□□ -1.48
CCDC144A-203ENST00000360495 ANK3Q12955 4377 aaKnown RBP5.83□□□□□ -1.48
CCDC144A-203ENST00000360495 FBN1P35555 2871 aaKnown RBP5.82□□□□□ -1.48
CCDC144A-203ENST00000360495 LCE3AQ5TA76 89 aa5.81□□□□□ -1.48
CCDC144A-203ENST00000360495 LAMA5O15230 3695 aa5.77□□□□□ -1.49
CCDC144A-203ENST00000360495 ZFHX3Q15911 3703 aa5.74□□□□□ -1.49
CCDC144A-203ENST00000360495 MT1HL1P0DM35 61 aa5.72□□□□□ -1.49
CCDC144A-203ENST00000360495 CSMD1Q96PZ7 3565 aa5.7□□□□□ -1.5
CCDC144A-203ENST00000360495 COL7A1Q02388 2944 aa5.7□□□□□ -1.5
CCDC144A-203ENST00000360495 ASPMQ8IZT6 3477 aa5.7□□□□□ -1.5
CCDC144A-203ENST00000360495 LORP23490 312 aaPredicted RBP5.66□□□□□ -1.5
CCDC144A-203ENST00000360495 MUC3AQ02505 3323 aa5.64□□□□□ -1.51
CCDC144A-203ENST00000360495 DMDP11532 3685 aa5.62□□□□□ -1.51
CCDC144A-203ENST00000360495 KRTAP10-5P60370 271 aa5.62□□□□□ -1.51
CCDC144A-203ENST00000360495 KRTAP10-4P60372 401 aaPredicted RBP5.53□□□□□ -1.52
CCDC144A-203ENST00000360495 SMG1Q96Q15 3661 aaKnown RBP5.53□□□□□ -1.52
CCDC144A-203ENST00000360495 KRTAP4-5Q9BYR2 181 aa5.49□□□□□ -1.53
CCDC144A-203ENST00000360495 TRRAPQ9Y4A5 3859 aa5.48□□□□□ -1.53
CCDC144A-203ENST00000360495 CSMD2Q7Z408 3487 aa5.45□□□□□ -1.54
CCDC144A-203ENST00000360495 HUWE1Q7Z6Z7 4374 aaKnown RBP5.45□□□□□ -1.54
CCDC144A-203ENST00000360495 ALMS1Q8TCU4 4167 aa5.44□□□□□ -1.54
CCDC144A-203ENST00000360495 CUBNO60494 3623 aa5.4□□□□□ -1.54
CCDC144A-203ENST00000360495 SPENQ96T58 3664 aaKnown RBP5.4□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms