RNA–Protein interactions for RNA: ENST00000360495.9

CCDC144A-203, Transcript of coiled-coil domain containing 144A, humanhuman

TSL 1 (best)

Gene CCDC144A, Length 5,545 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144A-203ENST00000360495 DCAF8L2P0C7V8 631 aa22.04■■□□□ 1.12
CCDC144A-203ENST00000360495 PELP1Q8IZL8 1130 aaKnown RBP21.84■■□□□ 1.09
CCDC144A-203ENST00000360495 SUPT5HO00267 1087 aaKnown RBP21.53■■□□□ 1.04
CCDC144A-203ENST00000360495 MYT1Q01538 1121 aa21.12■□□□□ 0.97
CCDC144A-203ENST00000360495 EHMT2Q96KQ7 1210 aa21.03■□□□□ 0.96
CCDC144A-203ENST00000360495 ERICH6Q7L0X2 663 aa21.01■□□□□ 0.95
CCDC144A-203ENST00000360495 CENPBP07199 599 aaPredicted RBP20.95■□□□□ 0.94
CCDC144A-203ENST00000360495 PCGF6Q9BYE7 350 aa20.87■□□□□ 0.93
CCDC144A-203ENST00000360495 SHROOM4Q9ULL8 1493 aa20.81■□□□□ 0.92
CCDC144A-203ENST00000360495 CCER1Q8TC90 406 aaPredicted RBP20.8■□□□□ 0.92
CCDC144A-203ENST00000360495 APLP2Q06481 763 aa20.65■□□□□ 0.9
CCDC144A-203ENST00000360495 ZEB1P37275 1124 aaPredicted RBP20.62■□□□□ 0.89
CCDC144A-203ENST00000360495 NISCHQ9Y2I1 1504 aa20.54■□□□□ 0.88
CCDC144A-203ENST00000360495 TTBK1Q5TCY1 1321 aaPredicted RBP20.46■□□□□ 0.87
CCDC144A-203ENST00000360495 FAM9AQ8IZU1 332 aaPredicted RBP20.37■□□□□ 0.85
CCDC144A-203ENST00000360495 NEFLP07196 543 aa20.35■□□□□ 0.85
CCDC144A-203ENST00000360495 YTHDC1Q96MU7 727 aaKnown RBP20.35■□□□□ 0.85
CCDC144A-203ENST00000360495 HRCP23327 699 aa19.98■□□□□ 0.79
CCDC144A-203ENST00000360495 RANGAP1P46060 587 aaPredicted RBP19.87■□□□□ 0.77
CCDC144A-203ENST00000360495 TRIM41Q8WV44 630 aa19.84■□□□□ 0.77
CCDC144A-203ENST00000360495 DAXXQ9UER7 740 aaPredicted RBP19.83■□□□□ 0.77
CCDC144A-203ENST00000360495 TRIM26Q12899 539 aaPredicted RBP19.77■□□□□ 0.76
CCDC144A-203ENST00000360495 ATP1B4Q9UN42 357 aaPredicted RBP19.66■□□□□ 0.74
CCDC144A-203ENST00000360495 PPARGC1BQ86YN6 1023 aaKnown RBP19.65■□□□□ 0.74
CCDC144A-203ENST00000360495 UBTFP17480 764 aaKnown RBP19.64■□□□□ 0.74
CCDC144A-203ENST00000360495 RTL5Q5HYW3 569 aaPredicted RBP19.63■□□□□ 0.73
CCDC144A-203ENST00000360495 DIEXFQ68CQ4 756 aaKnown RBP19.39■□□□□ 0.69
CCDC144A-203ENST00000360495 ZNF316A6NFI3 1004 aaPredicted RBP19.38■□□□□ 0.69
CCDC144A-203ENST00000360495 GTF3C3Q9Y5Q9 886 aa19.35■□□□□ 0.69
CCDC144A-203ENST00000360495 POLR3GLQ9BT43 218 aa19.31■□□□□ 0.68
CCDC144A-203ENST00000360495 ITGAEP38570 1179 aa19.22■□□□□ 0.67
CCDC144A-203ENST00000360495 HNRNPUL2Q1KMD3 747 aaKnown RBP19.2■□□□□ 0.66
CCDC144A-203ENST00000360495 BCANQ96GW7 911 aa19.2■□□□□ 0.66
CCDC144A-203ENST00000360495 CNGB1Q14028 1251 aaPredicted RBP19.2■□□□□ 0.66
CCDC144A-203ENST00000360495 LOC105371045A0A1W2PR82 267 aa19.19■□□□□ 0.66
CCDC144A-203ENST00000360495 CLSPNQ9HAW4 1339 aa19.19■□□□□ 0.66
CCDC144A-203ENST00000360495 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.17■□□□□ 0.66
CCDC144A-203ENST00000360495 CDK11AQ9UQ88 783 aaPredicted RBP19.08■□□□□ 0.64
CCDC144A-203ENST00000360495 CHIC1Q5VXU3 224 aa19.02■□□□□ 0.64
CCDC144A-203ENST00000360495 ACIN1Q9UKV3 1341 aaKnown RBP19■□□□□ 0.63
CCDC144A-203ENST00000360495 EIF5BO60841 1220 aaKnown RBP18.95■□□□□ 0.62
CCDC144A-203ENST00000360495 ANP32AP39687 249 aaKnown RBP18.8■□□□□ 0.6
CCDC144A-203ENST00000360495 ANP32CO43423 234 aa18.79■□□□□ 0.6
CCDC144A-203ENST00000360495 GLIPR1L2Q4G1C9 344 aa18.76■□□□□ 0.59
CCDC144A-203ENST00000360495 SLC4A1APQ9BWU0 796 aaKnown RBP18.75■□□□□ 0.59
CCDC144A-203ENST00000360495 MYT1LQ9UL68 1186 aa18.71■□□□□ 0.59
CCDC144A-203ENST00000360495 NEUROD1Q13562 356 aa18.68■□□□□ 0.58
CCDC144A-203ENST00000360495 NPM2Q86SE8 214 aaKnown RBP18.65■□□□□ 0.58
CCDC144A-203ENST00000360495 FAM50AQ14320 339 aaKnown RBP18.59■□□□□ 0.57
CCDC144A-203ENST00000360495 ZBTB47Q9UFB7 747 aaPredicted RBP18.59■□□□□ 0.57
CCDC144A-203ENST00000360495 FKBP8Q14318 412 aa18.56■□□□□ 0.56
CCDC144A-203ENST00000360495 TRIM52Q96A61 297 aa18.53■□□□□ 0.56
CCDC144A-203ENST00000360495 ANP32BQ92688 251 aaKnown RBP18.52■□□□□ 0.56
CCDC144A-203ENST00000360495 CANXP27824 592 aaKnown RBP18.51■□□□□ 0.55
CCDC144A-203ENST00000360495 NBR1Q14596 966 aa18.48■□□□□ 0.55
CCDC144A-203ENST00000360495 SCAF1Q9H7N4 1312 aaKnown RBP18.46■□□□□ 0.55
CCDC144A-203ENST00000360495 BCL11AQ9H165 835 aa18.43■□□□□ 0.54
CCDC144A-203ENST00000360495 ZNF326Q5BKZ1 582 aaKnown RBP18.42■□□□□ 0.54
CCDC144A-203ENST00000360495 HSP90AA1P07900 732 aaKnown RBP18.31■□□□□ 0.52
CCDC144A-203ENST00000360495 ARXQ96QS3 562 aa18.27■□□□□ 0.51
CCDC144A-203ENST00000360495 UPF2Q9HAU5 1272 aaKnown RBP18.27■□□□□ 0.51
CCDC144A-203ENST00000360495 HNRNPUQ00839 825 aaKnown RBP eCLIP18.26■□□□□ 0.51
CCDC144A-203ENST00000360495 ANP32EQ9BTT0 268 aa18.24■□□□□ 0.51
CCDC144A-203ENST00000360495 CCDC136Q96JN2 1154 aa18.2■□□□□ 0.5
CCDC144A-203ENST00000360495 NEFMP07197 916 aa18.15■□□□□ 0.5
CCDC144A-203ENST00000360495 SLC24A1O60721 1099 aa18.13■□□□□ 0.49
CCDC144A-203ENST00000360495 FAM9BQ8IZU0 186 aa18.13■□□□□ 0.49
CCDC144A-203ENST00000360495 DDX10Q13206 875 aaKnown RBP18.12■□□□□ 0.49
CCDC144A-203ENST00000360495 IRX6P78412 446 aaPredicted RBP18.04■□□□□ 0.48
CCDC144A-203ENST00000360495 MIER1Q8N108 512 aa18.04■□□□□ 0.48
CCDC144A-203ENST00000360495 TNNT2P45379 298 aaPredicted RBP18.02■□□□□ 0.47
CCDC144A-203ENST00000360495 TRIM44Q96DX7 344 aaPredicted RBP18.01■□□□□ 0.47
CCDC144A-203ENST00000360495 SALL2Q9Y467 1007 aaPredicted RBP18■□□□□ 0.47
CCDC144A-203ENST00000360495 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.99■□□□□ 0.47
CCDC144A-203ENST00000360495 TONSLQ96HA7 1378 aa17.98■□□□□ 0.47
CCDC144A-203ENST00000360495 RTN4Q9NQC3 1192 aaKnown RBP17.98■□□□□ 0.47
CCDC144A-203ENST00000360495 DDRGK1Q96HY6 314 aa17.97■□□□□ 0.47
CCDC144A-203ENST00000360495 DCAF1Q9Y4B6 1507 aa17.96■□□□□ 0.47
CCDC144A-203ENST00000360495 ERICH6BQ5W0A0 696 aa17.94■□□□□ 0.46
CCDC144A-203ENST00000360495 TMC1Q8TDI8 760 aa17.9■□□□□ 0.46
CCDC144A-203ENST00000360495 NAP1L5Q96NT1 182 aaPredicted RBP17.89■□□□□ 0.46
CCDC144A-203ENST00000360495 MRS2Q9HD23 443 aa17.89■□□□□ 0.46
CCDC144A-203ENST00000360495 BECN1Q14457 450 aa17.88■□□□□ 0.45
CCDC144A-203ENST00000360495 PPM1GO15355 546 aaPredicted RBP17.85■□□□□ 0.45
CCDC144A-203ENST00000360495 ABCC9O60706 1549 aa17.84■□□□□ 0.45
CCDC144A-203ENST00000360495 CSRNP3Q8WYN3 585 aa17.82■□□□□ 0.44
CCDC144A-203ENST00000360495 GOLGA6L22H0YM25 854 aa17.79■□□□□ 0.44
CCDC144A-203ENST00000360495 P3H3Q8IVL6 736 aa17.79■□□□□ 0.44
CCDC144A-203ENST00000360495 NOP58Q9Y2X3 529 aaKnown RBP17.77■□□□□ 0.44
CCDC144A-203ENST00000360495 LAS1LQ9Y4W2 734 aaKnown RBP17.77■□□□□ 0.44
CCDC144A-203ENST00000360495 PTMAP06454 111 aaKnown RBP17.76■□□□□ 0.43
CCDC144A-203ENST00000360495 DNTTIP2Q5QJE6 756 aaKnown RBP17.76■□□□□ 0.43
CCDC144A-203ENST00000360495 WDR43Q15061 677 aaKnown RBP eCLIP17.76■□□□□ 0.43
CCDC144A-203ENST00000360495 NCLP19338 710 aaKnown RBP17.75■□□□□ 0.43
CCDC144A-203ENST00000360495 CDK11BP21127 795 aaKnown RBP17.74■□□□□ 0.43
CCDC144A-203ENST00000360495 ARID3CA6NKF2 412 aa17.72■□□□□ 0.43
CCDC144A-203ENST00000360495 DEKP35659 375 aaKnown RBP17.72■□□□□ 0.43
CCDC144A-203ENST00000360495 ZNF777Q9ULD5 760 aaPredicted RBP17.7■□□□□ 0.42
CCDC144A-203ENST00000360495 SUPT16HQ9Y5B9 1047 aaKnown RBP17.7■□□□□ 0.42
CCDC144A-203ENST00000360495 HIRIP3Q9BW71 556 aaPredicted RBP17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms