RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 KRTAP10-10P60014 251 aa8.36□□□□□ -1.07
COL18A1-203ENST00000359759 MAP1AP78559 2803 aaPredicted RBP8.36□□□□□ -1.07
COL18A1-203ENST00000359759 UBR5O95071 2799 aaPredicted RBP8.33□□□□□ -1.08
COL18A1-203ENST00000359759 KRTAP1-4P0C5Y4 121 aa8.33□□□□□ -1.08
COL18A1-203ENST00000359759 DNAH14Q0VDD8 3507 aa8.29□□□□□ -1.08
COL18A1-203ENST00000359759 VCANP13611 3396 aa8.27□□□□□ -1.08
COL18A1-203ENST00000359759 USP34Q70CQ2 3546 aa8.27□□□□□ -1.09
COL18A1-203ENST00000359759 KALRNO60229 2985 aa8.26□□□□□ -1.09
COL18A1-203ENST00000359759 FRYLO94915 3013 aa8.25□□□□□ -1.09
COL18A1-203ENST00000359759 TNRC18O15417 2968 aaPredicted RBP8.22□□□□□ -1.09
COL18A1-203ENST00000359759 TACC2O95359 2948 aa8.22□□□□□ -1.09
COL18A1-203ENST00000359759 PRO2289Q9P1D8 64 aa8.21□□□□□ -1.1
COL18A1-203ENST00000359759 KMT2BQ9UMN6 2715 aaPredicted RBP8.2□□□□□ -1.1
COL18A1-203ENST00000359759 COL12A1Q99715 3063 aa8.2□□□□□ -1.1
COL18A1-203ENST00000359759 APCP25054 2843 aa8.19□□□□□ -1.1
COL18A1-203ENST00000359759 HIVEP1P15822 2718 aa8.19□□□□□ -1.1
COL18A1-203ENST00000359759 ITPR1Q14643 2758 aa8.18□□□□□ -1.1
COL18A1-203ENST00000359759 NSD1Q96L73 2696 aaPredicted RBP8.18□□□□□ -1.1
COL18A1-203ENST00000359759 ATMQ13315 3056 aa8.17□□□□□ -1.1
COL18A1-203ENST00000359759 LAMA1P25391 3075 aa8.16□□□□□ -1.1
COL18A1-203ENST00000359759 TENM4Q6N022 2769 aa8.15□□□□□ -1.11
COL18A1-203ENST00000359759 SPTBN5Q9NRC6 3674 aaKnown RBP8.15□□□□□ -1.11
COL18A1-203ENST00000359759 CFAP47Q6ZTR5 3102 aa8.14□□□□□ -1.11
COL18A1-203ENST00000359759 TPRXLQ17RH7 258 aa8.14□□□□□ -1.11
COL18A1-203ENST00000359759 DMXL2Q8TDJ6 3036 aa8.13□□□□□ -1.11
COL18A1-203ENST00000359759 UTP20O75691 2785 aaKnown RBP8.13□□□□□ -1.11
COL18A1-203ENST00000359759 KRTAP12-2P59991 146 aa8.12□□□□□ -1.11
COL18A1-203ENST00000359759 SPEGQ15772 3267 aa8.11□□□□□ -1.11
COL18A1-203ENST00000359759 EYSQ5T1H1 3165 aa8.11□□□□□ -1.11
COL18A1-203ENST00000359759 BOD1L1Q8NFC6 3051 aa8.1□□□□□ -1.11
COL18A1-203ENST00000359759 LRBAP50851 2863 aa8.07□□□□□ -1.12
COL18A1-203ENST00000359759 KRTAP13-3Q3SY46 172 aa8.05□□□□□ -1.12
COL18A1-203ENST00000359759 ASH1LQ9NR48 2969 aaKnown RBP8.03□□□□□ -1.12
COL18A1-203ENST00000359759 FLNCQ14315 2725 aa8.01□□□□□ -1.13
COL18A1-203ENST00000359759 NBEAQ8NFP9 2946 aa7.97□□□□□ -1.13
COL18A1-203ENST00000359759 DMXL1Q9Y485 3027 aa7.92□□□□□ -1.14
COL18A1-203ENST00000359759 KRTAP13-4Q3LI77 160 aa7.88□□□□□ -1.15
COL18A1-203ENST00000359759 ADGRG4Q8IZF6 3080 aa7.88□□□□□ -1.15
COL18A1-203ENST00000359759 KRTAP12-1P59990 96 aa7.84□□□□□ -1.15
COL18A1-203ENST00000359759 ZZEF1O43149 2961 aa7.83□□□□□ -1.16
COL18A1-203ENST00000359759 KRTAP15-1Q3LI76 137 aa7.78□□□□□ -1.16
COL18A1-203ENST00000359759 NIPBLQ6KC79 2804 aaeCLIP7.78□□□□□ -1.161e-6■■■■□ 20.9
COL18A1-203ENST00000359759 CELSR2Q9HCU4 2923 aa7.77□□□□□ -1.17
COL18A1-203ENST00000359759 TENM2Q9NT68 2774 aa7.75□□□□□ -1.17
COL18A1-203ENST00000359759 NBPF19A0A087WUL8 3843 aa7.75□□□□□ -1.17
COL18A1-203ENST00000359759 DCHS2Q6V1P9 2916 aa7.7□□□□□ -1.18
COL18A1-203ENST00000359759 TENM1Q9UKZ4 2725 aa7.68□□□□□ -1.18
COL18A1-203ENST00000359759 MYO15AQ9UKN7 3530 aa7.65□□□□□ -1.19
COL18A1-203ENST00000359759 KRTAP3-1Q9BYR8 98 aa7.62□□□□□ -1.19
COL18A1-203ENST00000359759 NF1P21359 2839 aa7.61□□□□□ -1.19
COL18A1-203ENST00000359759 TGP01266 2768 aa7.61□□□□□ -1.19
COL18A1-203ENST00000359759 ASPMQ8IZT6 3477 aa7.6□□□□□ -1.19
COL18A1-203ENST00000359759 LOC400499M0QZD8 3231 aa7.57□□□□□ -1.2
COL18A1-203ENST00000359759 CRCT1Q9UGL9 99 aa7.54□□□□□ -1.2
COL18A1-203ENST00000359759 ZANQ9Y493 2812 aa7.52□□□□□ -1.2
COL18A1-203ENST00000359759 DCHS1Q96JQ0 3298 aa7.5□□□□□ -1.21
COL18A1-203ENST00000359759 TENM3Q9P273 2699 aa7.49□□□□□ -1.21
COL18A1-203ENST00000359759 RELNP78509 3460 aa7.49□□□□□ -1.21
COL18A1-203ENST00000359759 WDFY3Q8IZQ1 3526 aa7.48□□□□□ -1.21
COL18A1-203ENST00000359759 CELSR1Q9NYQ6 3014 aa7.47□□□□□ -1.21
COL18A1-203ENST00000359759 PKD1L1Q8TDX9 2849 aa7.47□□□□□ -1.21
COL18A1-203ENST00000359759 HRNRQ86YZ3 2850 aaPredicted RBP7.44□□□□□ -1.22
COL18A1-203ENST00000359759 KRTAP10-6P60371 365 aaPredicted RBP7.42□□□□□ -1.22
COL18A1-203ENST00000359759 FBN2P35556 2912 aa7.4□□□□□ -1.22
COL18A1-203ENST00000359759 ZFHX3Q15911 3703 aa7.4□□□□□ -1.23
COL18A1-203ENST00000359759 INE1O15225 51 aa7.36□□□□□ -1.23
COL18A1-203ENST00000359759 VWFP04275 2813 aa7.34□□□□□ -1.23
COL18A1-203ENST00000359759 LAMA5O15230 3695 aa7.33□□□□□ -1.24
COL18A1-203ENST00000359759 MXRA5Q9NR99 2828 aa7.31□□□□□ -1.24
COL18A1-203ENST00000359759 CSMD1Q96PZ7 3565 aa7.28□□□□□ -1.24
COL18A1-203ENST00000359759 ZFHX4Q86UP3 3567 aa7.27□□□□□ -1.25
COL18A1-203ENST00000359759 KRTAP10-12P60413 245 aa7.23□□□□□ -1.25
COL18A1-203ENST00000359759 DMDP11532 3685 aa7.21□□□□□ -1.26
COL18A1-203ENST00000359759 PDZD2O15018 2839 aa7.18□□□□□ -1.26
COL18A1-203ENST00000359759 KRTAP4-5Q9BYR2 181 aa7.12□□□□□ -1.27
COL18A1-203ENST00000359759 KRTAP3-2Q9BYR7 98 aa7.1□□□□□ -1.27
COL18A1-203ENST00000359759 ANK3Q12955 4377 aaKnown RBP7.09□□□□□ -1.27
COL18A1-203ENST00000359759 KRTAP3-3Q9BYR6 98 aa7.08□□□□□ -1.28
COL18A1-203ENST00000359759 SPENQ96T58 3664 aaKnown RBP7.05□□□□□ -1.28
COL18A1-203ENST00000359759 LCE3AQ5TA76 89 aa7.03□□□□□ -1.28
COL18A1-203ENST00000359759 OTOGQ6ZRI0 2925 aa7.03□□□□□ -1.28
COL18A1-203ENST00000359759 KRTAP12-3P60328 96 aa7.03□□□□□ -1.28
COL18A1-203ENST00000359759 FBN1P35555 2871 aaKnown RBP7.01□□□□□ -1.29
COL18A1-203ENST00000359759 CSMD2Q7Z408 3487 aa7.01□□□□□ -1.29
COL18A1-203ENST00000359759 SMG1Q96Q15 3661 aaKnown RBP6.96□□□□□ -1.3
COL18A1-203ENST00000359759 MUC3AQ02505 3323 aa6.92□□□□□ -1.3
COL18A1-203ENST00000359759 KRTAP10-5P60370 271 aa6.91□□□□□ -1.3
COL18A1-203ENST00000359759 MT1HL1P0DM35 61 aa6.91□□□□□ -1.3
COL18A1-203ENST00000359759 SRRM2Q9UQ35 2752 aaKnown RBP6.85□□□□□ -1.31
COL18A1-203ENST00000359759 LORP23490 312 aaPredicted RBP6.82□□□□□ -1.32
COL18A1-203ENST00000359759 TRRAPQ9Y4A5 3859 aa6.81□□□□□ -1.32
COL18A1-203ENST00000359759 FBN3Q75N90 2809 aa6.78□□□□□ -1.32
COL18A1-203ENST00000359759 SVEP1Q4LDE5 3571 aa6.76□□□□□ -1.33
COL18A1-203ENST00000359759 MEGF8Q7Z7M0 2845 aa6.75□□□□□ -1.33
COL18A1-203ENST00000359759 HUWE1Q7Z6Z7 4374 aaKnown RBP6.73□□□□□ -1.33
COL18A1-203ENST00000359759 CUBNO60494 3623 aa6.72□□□□□ -1.33
COL18A1-203ENST00000359759 ALMS1Q8TCU4 4167 aa6.72□□□□□ -1.33
COL18A1-203ENST00000359759 KRTAP23-1A1A580 65 aa6.69□□□□□ -1.34
COL18A1-203ENST00000359759 COL7A1Q02388 2944 aa6.68□□□□□ -1.34
COL18A1-203ENST00000359759 KRTAP8-1Q8IUC2 63 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms