RNA–Protein interactions for RNA: ENST00000346562.6

NPAS3-201, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NPAS3, Length 5,847 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-201ENST00000346562 TRIOO75962 3097 aa11.64□□□□□ -0.55
NPAS3-201ENST00000346562 DSPP15924 2871 aaKnown RBP11.57□□□□□ -0.56
NPAS3-201ENST00000346562 FRYQ5TBA9 3013 aa11.53□□□□□ -0.56
NPAS3-201ENST00000346562 ITPR1Q14643 2758 aa11.52□□□□□ -0.56
NPAS3-201ENST00000346562 APCP25054 2843 aa11.42□□□□□ -0.58
NPAS3-201ENST00000346562 COL6A3P12111 3177 aa11.4□□□□□ -0.58
NPAS3-201ENST00000346562 VPS13AQ96RL7 3174 aa11.37□□□□□ -0.59
NPAS3-201ENST00000346562 DNAH14Q0VDD8 3507 aa11.37□□□□□ -0.59
NPAS3-201ENST00000346562 UTP20O75691 2785 aaKnown RBP11.36□□□□□ -0.59
NPAS3-201ENST00000346562 LAMA1P25391 3075 aa11.34□□□□□ -0.59
NPAS3-201ENST00000346562 KRTAP12-2P59991 146 aa11.34□□□□□ -0.59
NPAS3-201ENST00000346562 HIVEP1P15822 2718 aa11.33□□□□□ -0.6
NPAS3-201ENST00000346562 TNRC18O15417 2968 aaPredicted RBP11.33□□□□□ -0.6
NPAS3-201ENST00000346562 KRTAP13-4Q3LI77 160 aa11.32□□□□□ -0.6
NPAS3-201ENST00000346562 CELSR3Q9NYQ7 3312 aa11.32□□□□□ -0.6
NPAS3-201ENST00000346562 VCANP13611 3396 aa11.31□□□□□ -0.6
NPAS3-201ENST00000346562 SPTBN5Q9NRC6 3674 aaKnown RBP11.28□□□□□ -0.6
NPAS3-201ENST00000346562 TENM4Q6N022 2769 aa11.23□□□□□ -0.61
NPAS3-201ENST00000346562 EYSQ5T1H1 3165 aa11.2□□□□□ -0.62
NPAS3-201ENST00000346562 CRYBG3Q68DQ2 2970 aa11.1□□□□□ -0.63
NPAS3-201ENST00000346562 LRBAP50851 2863 aa11.1□□□□□ -0.63
NPAS3-201ENST00000346562 KRTAP12-1P59990 96 aa11.09□□□□□ -0.63
NPAS3-201ENST00000346562 KALRNO60229 2985 aa11.06□□□□□ -0.64
NPAS3-201ENST00000346562 TACC2O95359 2948 aa11.03□□□□□ -0.64
NPAS3-201ENST00000346562 KRTAP15-1Q3LI76 137 aa11.03□□□□□ -0.64
NPAS3-201ENST00000346562 REV3LO60673 3130 aa11.02□□□□□ -0.65
NPAS3-201ENST00000346562 NIPBLQ6KC79 2804 aaeCLIP11.02□□□□□ -0.65
NPAS3-201ENST00000346562 FRYLO94915 3013 aa10.99□□□□□ -0.65
NPAS3-201ENST00000346562 BOD1L1Q8NFC6 3051 aa10.99□□□□□ -0.65
NPAS3-201ENST00000346562 FLNCQ14315 2725 aa10.98□□□□□ -0.65
NPAS3-201ENST00000346562 DMXL2Q8TDJ6 3036 aa10.97□□□□□ -0.65
NPAS3-201ENST00000346562 ATMQ13315 3056 aa10.97□□□□□ -0.65
NPAS3-201ENST00000346562 SPEGQ15772 3267 aa10.94□□□□□ -0.66
NPAS3-201ENST00000346562 COL12A1Q99715 3063 aa10.9□□□□□ -0.66
NPAS3-201ENST00000346562 KRTAP3-1Q9BYR8 98 aa10.85□□□□□ -0.67
NPAS3-201ENST00000346562 DMXL1Q9Y485 3027 aa10.85□□□□□ -0.67
NPAS3-201ENST00000346562 FREM2Q5SZK8 3169 aa10.85□□□□□ -0.67
NPAS3-201ENST00000346562 ASH1LQ9NR48 2969 aaKnown RBP10.83□□□□□ -0.68
NPAS3-201ENST00000346562 TENM2Q9NT68 2774 aa10.78□□□□□ -0.68
NPAS3-201ENST00000346562 USP34Q70CQ2 3546 aa10.78□□□□□ -0.68
NPAS3-201ENST00000346562 ADGRG4Q8IZF6 3080 aa10.76□□□□□ -0.69
NPAS3-201ENST00000346562 MYO15AQ9UKN7 3530 aa10.71□□□□□ -0.69
NPAS3-201ENST00000346562 CELSR2Q9HCU4 2923 aa10.71□□□□□ -0.7
NPAS3-201ENST00000346562 TENM1Q9UKZ4 2725 aa10.67□□□□□ -0.7
NPAS3-201ENST00000346562 TGP01266 2768 aa10.66□□□□□ -0.7
NPAS3-201ENST00000346562 DCHS2Q6V1P9 2916 aa10.66□□□□□ -0.7
NPAS3-201ENST00000346562 CFAP47Q6ZTR5 3102 aa10.59□□□□□ -0.71
NPAS3-201ENST00000346562 KRTAP10-6P60371 365 aaPredicted RBP10.58□□□□□ -0.72
NPAS3-201ENST00000346562 NBEAQ8NFP9 2946 aa10.58□□□□□ -0.72
NPAS3-201ENST00000346562 LOC400499M0QZD8 3231 aa10.57□□□□□ -0.72
NPAS3-201ENST00000346562 ZZEF1O43149 2961 aa10.56□□□□□ -0.72
NPAS3-201ENST00000346562 TENM3Q9P273 2699 aa10.52□□□□□ -0.73
NPAS3-201ENST00000346562 KRTAP10-12P60413 245 aa10.47□□□□□ -0.73
NPAS3-201ENST00000346562 HRNRQ86YZ3 2850 aaPredicted RBP10.42□□□□□ -0.74
NPAS3-201ENST00000346562 NF1P21359 2839 aa10.42□□□□□ -0.74
NPAS3-201ENST00000346562 CRCT1Q9UGL9 99 aa10.41□□□□□ -0.74
NPAS3-201ENST00000346562 MT1HL1P0DM35 61 aa10.4□□□□□ -0.75
NPAS3-201ENST00000346562 INE1O15225 51 aa10.39□□□□□ -0.75
NPAS3-201ENST00000346562 ZANQ9Y493 2812 aa10.3□□□□□ -0.76
NPAS3-201ENST00000346562 CELSR1Q9NYQ6 3014 aa10.25□□□□□ -0.77
NPAS3-201ENST00000346562 RELNP78509 3460 aa10.23□□□□□ -0.77
NPAS3-201ENST00000346562 DMDP11532 3685 aa10.22□□□□□ -0.77
NPAS3-201ENST00000346562 WDFY3Q8IZQ1 3526 aa10.21□□□□□ -0.78
NPAS3-201ENST00000346562 MUC3AQ02505 3323 aa10.2□□□□□ -0.78
NPAS3-201ENST00000346562 LAMA5O15230 3695 aa10.19□□□□□ -0.78
NPAS3-201ENST00000346562 KRTAP3-2Q9BYR7 98 aa10.15□□□□□ -0.78
NPAS3-201ENST00000346562 ASPMQ8IZT6 3477 aa10.14□□□□□ -0.79
NPAS3-201ENST00000346562 KRTAP3-3Q9BYR6 98 aa10.13□□□□□ -0.79
NPAS3-201ENST00000346562 KRTAP12-3P60328 96 aa10.11□□□□□ -0.79
NPAS3-201ENST00000346562 FBN2P35556 2912 aa10.11□□□□□ -0.79
NPAS3-201ENST00000346562 MXRA5Q9NR99 2828 aa10.08□□□□□ -0.8
NPAS3-201ENST00000346562 DCHS1Q96JQ0 3298 aa10.05□□□□□ -0.8
NPAS3-201ENST00000346562 KRTAP23-1A1A580 65 aa10□□□□□ -0.81
NPAS3-201ENST00000346562 ZFHX4Q86UP3 3567 aa9.98□□□□□ -0.81
NPAS3-201ENST00000346562 KRTAP4-5Q9BYR2 181 aa9.98□□□□□ -0.81
NPAS3-201ENST00000346562 PDZD2O15018 2839 aa9.98□□□□□ -0.81
NPAS3-201ENST00000346562 KRTAP10-4P60372 401 aaPredicted RBP9.95□□□□□ -0.82
NPAS3-201ENST00000346562 PKD1L1Q8TDX9 2849 aa9.94□□□□□ -0.82
NPAS3-201ENST00000346562 LCE3AQ5TA76 89 aa9.93□□□□□ -0.82
NPAS3-201ENST00000346562 VWFP04275 2813 aa9.88□□□□□ -0.83
NPAS3-201ENST00000346562 NBPF19A0A087WUL8 3843 aa9.84□□□□□ -0.83
NPAS3-201ENST00000346562 ANK3Q12955 4377 aaKnown RBP9.83□□□□□ -0.84
NPAS3-201ENST00000346562 ALMS1Q8TCU4 4167 aa9.83□□□□□ -0.84
NPAS3-201ENST00000346562 KRTAP8-1Q8IUC2 63 aa9.76□□□□□ -0.85
NPAS3-201ENST00000346562 SMG1Q96Q15 3661 aaKnown RBP9.67□□□□□ -0.86
NPAS3-201ENST00000346562 HUWE1Q7Z6Z7 4374 aaKnown RBP9.65□□□□□ -0.87
NPAS3-201ENST00000346562 KRTAP10-5P60370 271 aa9.61□□□□□ -0.87
NPAS3-201ENST00000346562 LORP23490 312 aaPredicted RBP9.58□□□□□ -0.88
NPAS3-201ENST00000346562 CSMD1Q96PZ7 3565 aa9.56□□□□□ -0.88
NPAS3-201ENST00000346562 OTOGQ6ZRI0 2925 aa9.51□□□□□ -0.89
NPAS3-201ENST00000346562 ZFHX3Q15911 3703 aa9.49□□□□□ -0.89
NPAS3-201ENST00000346562 SPENQ96T58 3664 aaKnown RBP9.47□□□□□ -0.89
NPAS3-201ENST00000346562 FBN3Q75N90 2809 aa9.47□□□□□ -0.89
NPAS3-201ENST00000346562 MEGF8Q7Z7M0 2845 aa9.43□□□□□ -0.9
NPAS3-201ENST00000346562 BSNQ9UPA5 3926 aa9.41□□□□□ -0.9
NPAS3-201ENST00000346562 SVEP1Q4LDE5 3571 aa9.41□□□□□ -0.9
NPAS3-201ENST00000346562 CSMD2Q7Z408 3487 aa9.41□□□□□ -0.9
NPAS3-201ENST00000346562 FBN1P35555 2871 aaKnown RBP9.35□□□□□ -0.91
NPAS3-201ENST00000346562 MT1HP80294 61 aa9.24□□□□□ -0.93
NPAS3-201ENST00000346562 SRRM2Q9UQ35 2752 aaKnown RBP9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms