RNA–Protein interactions for RNA: ENST00000345662.5

SPAST-202, Transcript of spastin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SPAST, Length 5,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-202ENST00000345662 LRBAP50851 2863 aa9.73□□□□□ -0.85
SPAST-202ENST00000345662 Q5VSD8 79 aa9.71□□□□□ -0.85
SPAST-202ENST00000345662 BOD1L1Q8NFC6 3051 aa9.69□□□□□ -0.86
SPAST-202ENST00000345662 UTP20O75691 2785 aaKnown RBP9.69□□□□□ -0.86
SPAST-202ENST00000345662 COL12A1Q99715 3063 aa9.66□□□□□ -0.86
SPAST-202ENST00000345662 FRYLO94915 3013 aa9.65□□□□□ -0.86
SPAST-202ENST00000345662 SZT2Q5T011 3432 aa9.65□□□□□ -0.87
SPAST-202ENST00000345662 PLAC4Q8WY50 150 aa9.64□□□□□ -0.87
SPAST-202ENST00000345662 NIPBLQ6KC79 2804 aaeCLIP9.58□□□□□ -0.88
SPAST-202ENST00000345662 HIVEP1P15822 2718 aa9.58□□□□□ -0.88
SPAST-202ENST00000345662 COL6A3P12111 3177 aa9.53□□□□□ -0.88
SPAST-202ENST00000345662 H0YAA0 97 aa9.52□□□□□ -0.89
SPAST-202ENST00000345662 ZZEF1O43149 2961 aa9.52□□□□□ -0.89
SPAST-202ENST00000345662 KMT2BQ9UMN6 2715 aaPredicted RBP9.51□□□□□ -0.89
SPAST-202ENST00000345662 C20orf166-AS1Q96NR2 134 aa9.51□□□□□ -0.89
SPAST-202ENST00000345662 CELSR2Q9HCU4 2923 aa9.5□□□□□ -0.89
SPAST-202ENST00000345662 REV3LO60673 3130 aa9.46□□□□□ -0.89
SPAST-202ENST00000345662 C10orf95Q9H7T3 257 aa9.45□□□□□ -0.9
SPAST-202ENST00000345662 ZANQ9Y493 2812 aa9.43□□□□□ -0.9
SPAST-202ENST00000345662 CFAP47Q6ZTR5 3102 aa9.43□□□□□ -0.9
SPAST-202ENST00000345662 DCHS2Q6V1P9 2916 aa9.35□□□□□ -0.91
SPAST-202ENST00000345662 TNP1P09430 55 aa9.32□□□□□ -0.92
SPAST-202ENST00000345662 HRNRQ86YZ3 2850 aaPredicted RBP9.31□□□□□ -0.92
SPAST-202ENST00000345662 P0C880 135 aa9.3□□□□□ -0.92
SPAST-202ENST00000345662 PP632Q6XCG6 107 aa9.29□□□□□ -0.92
SPAST-202ENST00000345662 KRTAP1-4P0C5Y4 121 aa9.28□□□□□ -0.92
SPAST-202ENST00000345662 SPEGQ15772 3267 aa9.27□□□□□ -0.93
SPAST-202ENST00000345662 TNRC18O15417 2968 aaPredicted RBP9.26□□□□□ -0.93
SPAST-202ENST00000345662 EYSQ5T1H1 3165 aa9.23□□□□□ -0.93
SPAST-202ENST00000345662 FBN2P35556 2912 aa9.22□□□□□ -0.93
SPAST-202ENST00000345662 KRTAP13-3Q3SY46 172 aa9.21□□□□□ -0.94
SPAST-202ENST00000345662 NF1P21359 2839 aa9.19□□□□□ -0.94
SPAST-202ENST00000345662 TENM4Q6N022 2769 aa9.16□□□□□ -0.94
SPAST-202ENST00000345662 DMXL1Q9Y485 3027 aa9.15□□□□□ -0.94
SPAST-202ENST00000345662 LOC400499M0QZD8 3231 aa9.11□□□□□ -0.95
SPAST-202ENST00000345662 USP34Q70CQ2 3546 aa9.1□□□□□ -0.95
SPAST-202ENST00000345662 CRYBG3Q68DQ2 2970 aa9.1□□□□□ -0.95
SPAST-202ENST00000345662 XP32Q5T750 250 aa9.09□□□□□ -0.95
SPAST-202ENST00000345662 SPTBN5Q9NRC6 3674 aaKnown RBP9.08□□□□□ -0.96
SPAST-202ENST00000345662 TGP01266 2768 aa9.06□□□□□ -0.96
SPAST-202ENST00000345662 KRTAP10-8P60410 259 aa9.06□□□□□ -0.96
SPAST-202ENST00000345662 MXRA5Q9NR99 2828 aa8.97□□□□□ -0.97
SPAST-202ENST00000345662 TENM3Q9P273 2699 aa8.94□□□□□ -0.98
SPAST-202ENST00000345662 CELSR1Q9NYQ6 3014 aa8.88□□□□□ -0.99
SPAST-202ENST00000345662 MYO15AQ9UKN7 3530 aa8.85□□□□□ -0.99
SPAST-202ENST00000345662 TENM1Q9UKZ4 2725 aa8.84□□□□□ -0.99
SPAST-202ENST00000345662 KRTAP12-2P59991 146 aa8.82□□□□□ -1
SPAST-202ENST00000345662 TPRXLQ17RH7 258 aa8.81□□□□□ -1
SPAST-202ENST00000345662 PDZD2O15018 2839 aa8.71□□□□□ -1.02
SPAST-202ENST00000345662 A0A1B0GVY2 172 aa8.7□□□□□ -1.02
SPAST-202ENST00000345662 KRTAP21-3Q3LHN1 58 aa8.68□□□□□ -1.02
SPAST-202ENST00000345662 KRTAP12-1P59990 96 aa8.68□□□□□ -1.02
SPAST-202ENST00000345662 KRTAP3-1Q9BYR8 98 aa8.66□□□□□ -1.02
SPAST-202ENST00000345662 WDFY3Q8IZQ1 3526 aa8.64□□□□□ -1.03
SPAST-202ENST00000345662 DCHS1Q96JQ0 3298 aa8.64□□□□□ -1.03
SPAST-202ENST00000345662 RELNP78509 3460 aa8.64□□□□□ -1.03
SPAST-202ENST00000345662 TENM2Q9NT68 2774 aa8.6□□□□□ -1.03
SPAST-202ENST00000345662 KRTAP13-4Q3LI77 160 aa8.59□□□□□ -1.03
SPAST-202ENST00000345662 PKD1L1Q8TDX9 2849 aa8.5□□□□□ -1.05
SPAST-202ENST00000345662 ZFHX4Q86UP3 3567 aa8.49□□□□□ -1.05
SPAST-202ENST00000345662 KRTAP10-6P60371 365 aaPredicted RBP8.48□□□□□ -1.05
SPAST-202ENST00000345662 CSMD1Q96PZ7 3565 aa8.48□□□□□ -1.05
SPAST-202ENST00000345662 KRTAP10-10P60014 251 aa8.44□□□□□ -1.06
SPAST-202ENST00000345662 VWFP04275 2813 aa8.41□□□□□ -1.06
SPAST-202ENST00000345662 KRTAP15-1Q3LI76 137 aa8.4□□□□□ -1.07
SPAST-202ENST00000345662 PRO2289Q9P1D8 64 aa8.38□□□□□ -1.07
SPAST-202ENST00000345662 FBN1P35555 2871 aaKnown RBP8.34□□□□□ -1.07
SPAST-202ENST00000345662 ASPMQ8IZT6 3477 aa8.34□□□□□ -1.07
SPAST-202ENST00000345662 LAMA5O15230 3695 aa8.32□□□□□ -1.08
SPAST-202ENST00000345662 SMG1Q96Q15 3661 aaKnown RBP8.26□□□□□ -1.09
SPAST-202ENST00000345662 FBN3Q75N90 2809 aa8.23□□□□□ -1.09
SPAST-202ENST00000345662 KRTAP3-2Q9BYR7 98 aa8.17□□□□□ -1.1
SPAST-202ENST00000345662 SRRM2Q9UQ35 2752 aaKnown RBP8.16□□□□□ -1.1
SPAST-202ENST00000345662 MEGF8Q7Z7M0 2845 aa8.16□□□□□ -1.1
SPAST-202ENST00000345662 OTOGQ6ZRI0 2925 aa8.13□□□□□ -1.11
SPAST-202ENST00000345662 KRTAP3-3Q9BYR6 98 aa8.11□□□□□ -1.11
SPAST-202ENST00000345662 SVEP1Q4LDE5 3571 aa8.09□□□□□ -1.11
SPAST-202ENST00000345662 INE1O15225 51 aa8.05□□□□□ -1.12
SPAST-202ENST00000345662 NBPF19A0A087WUL8 3843 aa8.04□□□□□ -1.12
SPAST-202ENST00000345662 DMDP11532 3685 aa8.03□□□□□ -1.12
SPAST-202ENST00000345662 CUBNO60494 3623 aa8□□□□□ -1.13
SPAST-202ENST00000345662 ANK3Q12955 4377 aaKnown RBP7.94□□□□□ -1.14
SPAST-202ENST00000345662 COL7A1Q02388 2944 aa7.93□□□□□ -1.14
SPAST-202ENST00000345662 MUC3AQ02505 3323 aa7.91□□□□□ -1.14
SPAST-202ENST00000345662 ZFHX3Q15911 3703 aa7.87□□□□□ -1.15
SPAST-202ENST00000345662 TRRAPQ9Y4A5 3859 aa7.81□□□□□ -1.16
SPAST-202ENST00000345662 CSMD2Q7Z408 3487 aa7.79□□□□□ -1.16
SPAST-202ENST00000345662 SPENQ96T58 3664 aaKnown RBP7.77□□□□□ -1.17
SPAST-202ENST00000345662 KRTAP23-1A1A580 65 aa7.71□□□□□ -1.17
SPAST-202ENST00000345662 MT1HL1P0DM35 61 aa7.71□□□□□ -1.18
SPAST-202ENST00000345662 KRTAP10-4P60372 401 aaPredicted RBP7.64□□□□□ -1.19
SPAST-202ENST00000345662 KRTAP10-12P60413 245 aa7.62□□□□□ -1.19
SPAST-202ENST00000345662 BSNQ9UPA5 3926 aa7.55□□□□□ -1.2
SPAST-202ENST00000345662 HUWE1Q7Z6Z7 4374 aaKnown RBP7.53□□□□□ -1.2
SPAST-202ENST00000345662 KRTAP12-3P60328 96 aa7.53□□□□□ -1.2
SPAST-202ENST00000345662 LORP23490 312 aaPredicted RBP7.5□□□□□ -1.21
SPAST-202ENST00000345662 LCE3AQ5TA76 89 aa7.48□□□□□ -1.21
SPAST-202ENST00000345662 VPS13CQ709C8 3753 aa7.45□□□□□ -1.22
SPAST-202ENST00000345662 CSMD3Q7Z407 3707 aa7.3□□□□□ -1.24
SPAST-202ENST00000345662 CRCT1Q9UGL9 99 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms