RNA–Protein interactions for RNA: ENST00000345356.10

COL12A1-202, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL12A1, Length 5,886 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-202ENST00000345356 Q5VSD8 79 aa6.68□□□□□ -1.34
COL12A1-202ENST00000345356 SPTBN5Q9NRC6 3674 aaKnown RBP6.66□□□□□ -1.34
COL12A1-202ENST00000345356 REV3LO60673 3130 aa6.66□□□□□ -1.34
COL12A1-202ENST00000345356 RPS29P62273 56 aaKnown RBP6.66□□□□□ -1.34
COL12A1-202ENST00000345356 FRYLO94915 3013 aa6.66□□□□□ -1.34
COL12A1-202ENST00000345356 TACC2O95359 2948 aa6.65□□□□□ -1.34
COL12A1-202ENST00000345356 BOD1L1Q8NFC6 3051 aa6.61□□□□□ -1.35
COL12A1-202ENST00000345356 ZZEF1O43149 2961 aa6.6□□□□□ -1.35
COL12A1-202ENST00000345356 ATMQ13315 3056 aa6.6□□□□□ -1.35
COL12A1-202ENST00000345356 UTP20O75691 2785 aaKnown RBP6.57□□□□□ -1.36
COL12A1-202ENST00000345356 HIVEP1P15822 2718 aa6.56□□□□□ -1.36
COL12A1-202ENST00000345356 COL6A3P12111 3177 aa6.56□□□□□ -1.36
COL12A1-202ENST00000345356 P0C880 135 aa6.55□□□□□ -1.36
COL12A1-202ENST00000345356 KRTAP21-3Q3LHN1 58 aa6.53□□□□□ -1.36
COL12A1-202ENST00000345356 IGSF10Q6WRI0 2623 aa6.52□□□□□ -1.37
COL12A1-202ENST00000345356 CFAP47Q6ZTR5 3102 aa6.51□□□□□ -1.37
COL12A1-202ENST00000345356 EYSQ5T1H1 3165 aa6.51□□□□□ -1.37
COL12A1-202ENST00000345356 COL12A1Q99715 3063 aa6.49□□□□□ -1.37
COL12A1-202ENST00000345356 SPEGQ15772 3267 aa6.46□□□□□ -1.38
COL12A1-202ENST00000345356 TNP1P09430 55 aa6.46□□□□□ -1.38
COL12A1-202ENST00000345356 CELSR2Q9HCU4 2923 aa6.45□□□□□ -1.38
COL12A1-202ENST00000345356 FLNCQ14315 2725 aa6.45□□□□□ -1.38
COL12A1-202ENST00000345356 ITPR2Q14571 2701 aa6.45□□□□□ -1.38
COL12A1-202ENST00000345356 USP34Q70CQ2 3546 aa6.44□□□□□ -1.38
COL12A1-202ENST00000345356 PP632Q6XCG6 107 aa6.43□□□□□ -1.38
COL12A1-202ENST00000345356 NIPBLQ6KC79 2804 aaeCLIP6.41□□□□□ -1.38
COL12A1-202ENST00000345356 MYO15AQ9UKN7 3530 aa6.4□□□□□ -1.38
COL12A1-202ENST00000345356 KRTAP13-3Q3SY46 172 aa6.4□□□□□ -1.39
COL12A1-202ENST00000345356 KRTAP10-8P60410 259 aa6.39□□□□□ -1.39
COL12A1-202ENST00000345356 TNRC18O15417 2968 aaPredicted RBP6.38□□□□□ -1.39
COL12A1-202ENST00000345356 DMXL1Q9Y485 3027 aa6.37□□□□□ -1.39
COL12A1-202ENST00000345356 ZANQ9Y493 2812 aa6.35□□□□□ -1.39
COL12A1-202ENST00000345356 KRTAP1-4P0C5Y4 121 aa6.34□□□□□ -1.39
COL12A1-202ENST00000345356 DCHS2Q6V1P9 2916 aa6.33□□□□□ -1.4
COL12A1-202ENST00000345356 HRNRQ86YZ3 2850 aaPredicted RBP6.3□□□□□ -1.4
COL12A1-202ENST00000345356 FBN2P35556 2912 aa6.27□□□□□ -1.41
COL12A1-202ENST00000345356 TGP01266 2768 aa6.27□□□□□ -1.41
COL12A1-202ENST00000345356 TPRXLQ17RH7 258 aa6.25□□□□□ -1.41
COL12A1-202ENST00000345356 KMT2BQ9UMN6 2715 aaPredicted RBP6.24□□□□□ -1.41
COL12A1-202ENST00000345356 XP32Q5T750 250 aa6.22□□□□□ -1.41
COL12A1-202ENST00000345356 NF1P21359 2839 aa6.2□□□□□ -1.42
COL12A1-202ENST00000345356 KRTAP12-2P59991 146 aa6.19□□□□□ -1.42
COL12A1-202ENST00000345356 LOC400499M0QZD8 3231 aa6.19□□□□□ -1.42
COL12A1-202ENST00000345356 CRYBG3Q68DQ2 2970 aa6.13□□□□□ -1.43
COL12A1-202ENST00000345356 DCHS1Q96JQ0 3298 aa6.09□□□□□ -1.43
COL12A1-202ENST00000345356 WDFY3Q8IZQ1 3526 aa6.08□□□□□ -1.44
COL12A1-202ENST00000345356 DMDP11532 3685 aa6.07□□□□□ -1.44
COL12A1-202ENST00000345356 KRTAP12-1P59990 96 aa6.06□□□□□ -1.44
COL12A1-202ENST00000345356 ASPMQ8IZT6 3477 aa6.05□□□□□ -1.44
COL12A1-202ENST00000345356 CELSR1Q9NYQ6 3014 aa6.03□□□□□ -1.44
COL12A1-202ENST00000345356 MXRA5Q9NR99 2828 aa6.03□□□□□ -1.44
COL12A1-202ENST00000345356 KRTAP3-1Q9BYR8 98 aa6.02□□□□□ -1.45
COL12A1-202ENST00000345356 TENM4Q6N022 2769 aa6.02□□□□□ -1.45
COL12A1-202ENST00000345356 TENM3Q9P273 2699 aa6.02□□□□□ -1.45
COL12A1-202ENST00000345356 A0A1B0GVY2 172 aa6.02□□□□□ -1.45
COL12A1-202ENST00000345356 PDZD2O15018 2839 aa6.01□□□□□ -1.45
COL12A1-202ENST00000345356 CSMD1Q96PZ7 3565 aa5.99□□□□□ -1.45
COL12A1-202ENST00000345356 KRTAP15-1Q3LI76 137 aa5.99□□□□□ -1.45
COL12A1-202ENST00000345356 ZFHX4Q86UP3 3567 aa5.98□□□□□ -1.45
COL12A1-202ENST00000345356 KRTAP13-4Q3LI77 160 aa5.97□□□□□ -1.45
COL12A1-202ENST00000345356 LAMA5O15230 3695 aa5.96□□□□□ -1.45
COL12A1-202ENST00000345356 PRO2289Q9P1D8 64 aa5.96□□□□□ -1.46
COL12A1-202ENST00000345356 RELNP78509 3460 aa5.93□□□□□ -1.46
COL12A1-202ENST00000345356 TENM1Q9UKZ4 2725 aa5.92□□□□□ -1.46
COL12A1-202ENST00000345356 KRTAP10-6P60371 365 aaPredicted RBP5.91□□□□□ -1.46
COL12A1-202ENST00000345356 TENM2Q9NT68 2774 aa5.89□□□□□ -1.47
COL12A1-202ENST00000345356 MUC3AQ02505 3323 aa5.87□□□□□ -1.47
COL12A1-202ENST00000345356 SMG1Q96Q15 3661 aaKnown RBP5.8□□□□□ -1.48
COL12A1-202ENST00000345356 PKD1L1Q8TDX9 2849 aa5.8□□□□□ -1.48
COL12A1-202ENST00000345356 KRTAP10-10P60014 251 aa5.77□□□□□ -1.49
COL12A1-202ENST00000345356 NBPF19A0A087WUL8 3843 aa5.72□□□□□ -1.49
COL12A1-202ENST00000345356 SRRM2Q9UQ35 2752 aaKnown RBP5.72□□□□□ -1.49
COL12A1-202ENST00000345356 VWFP04275 2813 aa5.7□□□□□ -1.5
COL12A1-202ENST00000345356 SVEP1Q4LDE5 3571 aa5.69□□□□□ -1.5
COL12A1-202ENST00000345356 KRTAP3-2Q9BYR7 98 aa5.69□□□□□ -1.5
COL12A1-202ENST00000345356 INE1O15225 51 aa5.68□□□□□ -1.5
COL12A1-202ENST00000345356 CUBNO60494 3623 aa5.66□□□□□ -1.5
COL12A1-202ENST00000345356 ZFHX3Q15911 3703 aa5.64□□□□□ -1.51
COL12A1-202ENST00000345356 KRTAP3-3Q9BYR6 98 aa5.63□□□□□ -1.51
COL12A1-202ENST00000345356 FBN3Q75N90 2809 aa5.63□□□□□ -1.51
COL12A1-202ENST00000345356 SPENQ96T58 3664 aaKnown RBP5.6□□□□□ -1.51
COL12A1-202ENST00000345356 MEGF8Q7Z7M0 2845 aa5.6□□□□□ -1.51
COL12A1-202ENST00000345356 FBN1P35555 2871 aaKnown RBP5.59□□□□□ -1.51
COL12A1-202ENST00000345356 BSNQ9UPA5 3926 aa5.56□□□□□ -1.52
COL12A1-202ENST00000345356 ANK3Q12955 4377 aaKnown RBP5.45□□□□□ -1.54
COL12A1-202ENST00000345356 CSMD2Q7Z408 3487 aa5.45□□□□□ -1.54
COL12A1-202ENST00000345356 OTOGQ6ZRI0 2925 aa5.44□□□□□ -1.54
COL12A1-202ENST00000345356 COL7A1Q02388 2944 aa5.43□□□□□ -1.54
COL12A1-202ENST00000345356 TRRAPQ9Y4A5 3859 aa5.31□□□□□ -1.56
COL12A1-202ENST00000345356 KRTAP23-1A1A580 65 aa5.29□□□□□ -1.56
COL12A1-202ENST00000345356 VPS13CQ709C8 3753 aa5.28□□□□□ -1.56
COL12A1-202ENST00000345356 KRTAP10-12P60413 245 aa5.25□□□□□ -1.57
COL12A1-202ENST00000345356 LORP23490 312 aaPredicted RBP5.22□□□□□ -1.57
COL12A1-202ENST00000345356 LCE3AQ5TA76 89 aa5.22□□□□□ -1.57
COL12A1-202ENST00000345356 KRTAP12-3P60328 96 aa5.21□□□□□ -1.57
COL12A1-202ENST00000345356 MT1HL1P0DM35 61 aa5.19□□□□□ -1.58
COL12A1-202ENST00000345356 KRTAP10-4P60372 401 aaPredicted RBP5.14□□□□□ -1.59
COL12A1-202ENST00000345356 CSMD3Q7Z407 3707 aa5.14□□□□□ -1.59
COL12A1-202ENST00000345356 HUWE1Q7Z6Z7 4374 aaKnown RBP5.12□□□□□ -1.59
COL12A1-202ENST00000345356 ZNF469Q96JG9 3925 aaPredicted RBP5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms