RNA–Protein interactions for RNA: ENST00000342494.7

UBE3B-202, Transcript of ubiquitin protein ligase E3B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE3B, Length 5,722 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-202ENST00000342494 DNAH14Q0VDD8 3507 aa8.14□□□□□ -1.11
UBE3B-202ENST00000342494 SZT2Q5T011 3432 aa8.13□□□□□ -1.11
UBE3B-202ENST00000342494 KRTAP25-1Q3LHN0 102 aa8.12□□□□□ -1.11
UBE3B-202ENST00000342494 KALRNO60229 2985 aa8.11□□□□□ -1.11
UBE3B-202ENST00000342494 NIPBLQ6KC79 2804 aaeCLIP8.11□□□□□ -1.11
UBE3B-202ENST00000342494 CELSR3Q9NYQ7 3312 aa8.11□□□□□ -1.11
UBE3B-202ENST00000342494 XP32Q5T750 250 aa8.1□□□□□ -1.11
UBE3B-202ENST00000342494 FRYLO94915 3013 aa8.1□□□□□ -1.11
UBE3B-202ENST00000342494 ASH1LQ9NR48 2969 aaKnown RBP8.09□□□□□ -1.11
UBE3B-202ENST00000342494 LAMA1P25391 3075 aa8.08□□□□□ -1.12
UBE3B-202ENST00000342494 LRBAP50851 2863 aa8.07□□□□□ -1.12
UBE3B-202ENST00000342494 A0A1B0GVY2 172 aa8.07□□□□□ -1.12
UBE3B-202ENST00000342494 KRTAP1-4P0C5Y4 121 aa8.06□□□□□ -1.12
UBE3B-202ENST00000342494 KRTAP10-8P60410 259 aa8.05□□□□□ -1.12
UBE3B-202ENST00000342494 VCANP13611 3396 aa8.05□□□□□ -1.12
UBE3B-202ENST00000342494 A6NN06 94 aa8.01□□□□□ -1.13
UBE3B-202ENST00000342494 CELSR2Q9HCU4 2923 aa8.01□□□□□ -1.13
UBE3B-202ENST00000342494 TPRXLQ17RH7 258 aa7.99□□□□□ -1.13
UBE3B-202ENST00000342494 C10orf95Q9H7T3 257 aa7.96□□□□□ -1.13
UBE3B-202ENST00000342494 KRTAP10-10P60014 251 aa7.94□□□□□ -1.14
UBE3B-202ENST00000342494 BOD1L1Q8NFC6 3051 aa7.94□□□□□ -1.14
UBE3B-202ENST00000342494 ADGRG4Q8IZF6 3080 aa7.93□□□□□ -1.14
UBE3B-202ENST00000342494 TENM3Q9P273 2699 aa7.93□□□□□ -1.14
UBE3B-202ENST00000342494 DCHS2Q6V1P9 2916 aa7.93□□□□□ -1.14
UBE3B-202ENST00000342494 KRTAP16-1A8MUX0 517 aa7.92□□□□□ -1.14
UBE3B-202ENST00000342494 ZZEF1O43149 2961 aa7.92□□□□□ -1.14
UBE3B-202ENST00000342494 EYSQ5T1H1 3165 aa7.87□□□□□ -1.15
UBE3B-202ENST00000342494 PP632Q6XCG6 107 aa7.86□□□□□ -1.15
UBE3B-202ENST00000342494 TENM1Q9UKZ4 2725 aa7.86□□□□□ -1.15
UBE3B-202ENST00000342494 NDUFAF8A1L188 74 aa7.86□□□□□ -1.15
UBE3B-202ENST00000342494 NBEAQ8NFP9 2946 aa7.85□□□□□ -1.15
UBE3B-202ENST00000342494 PRO2289Q9P1D8 64 aa7.82□□□□□ -1.16
UBE3B-202ENST00000342494 SPEGQ15772 3267 aa7.82□□□□□ -1.16
UBE3B-202ENST00000342494 COL6A3P12111 3177 aa7.81□□□□□ -1.16
UBE3B-202ENST00000342494 SPTBN5Q9NRC6 3674 aaKnown RBP7.81□□□□□ -1.16
UBE3B-202ENST00000342494 KRTAP13-3Q3SY46 172 aa7.81□□□□□ -1.16
UBE3B-202ENST00000342494 CFAP47Q6ZTR5 3102 aa7.79□□□□□ -1.16
UBE3B-202ENST00000342494 TENM2Q9NT68 2774 aa7.78□□□□□ -1.16
UBE3B-202ENST00000342494 ZANQ9Y493 2812 aa7.76□□□□□ -1.17
UBE3B-202ENST00000342494 NF1P21359 2839 aa7.75□□□□□ -1.17
UBE3B-202ENST00000342494 H0YAA0 97 aa7.66□□□□□ -1.18
UBE3B-202ENST00000342494 MYO15AQ9UKN7 3530 aa7.63□□□□□ -1.19
UBE3B-202ENST00000342494 P0C880 135 aa7.63□□□□□ -1.19
UBE3B-202ENST00000342494 USP34Q70CQ2 3546 aa7.59□□□□□ -1.19
UBE3B-202ENST00000342494 PKD1L1Q8TDX9 2849 aa7.58□□□□□ -1.2
UBE3B-202ENST00000342494 TNRC18O15417 2968 aaPredicted RBP7.58□□□□□ -1.2
UBE3B-202ENST00000342494 FBN2P35556 2912 aa7.54□□□□□ -1.2
UBE3B-202ENST00000342494 DMXL1Q9Y485 3027 aa7.51□□□□□ -1.21
UBE3B-202ENST00000342494 HRNRQ86YZ3 2850 aaPredicted RBP7.5□□□□□ -1.21
UBE3B-202ENST00000342494 MXRA5Q9NR99 2828 aa7.48□□□□□ -1.21
UBE3B-202ENST00000342494 CELSR1Q9NYQ6 3014 aa7.48□□□□□ -1.21
UBE3B-202ENST00000342494 TGP01266 2768 aa7.47□□□□□ -1.21
UBE3B-202ENST00000342494 LOC400499M0QZD8 3231 aa7.44□□□□□ -1.22
UBE3B-202ENST00000342494 VWFP04275 2813 aa7.43□□□□□ -1.22
UBE3B-202ENST00000342494 PDZD2O15018 2839 aa7.4□□□□□ -1.22
UBE3B-202ENST00000342494 WDFY3Q8IZQ1 3526 aa7.33□□□□□ -1.24
UBE3B-202ENST00000342494 KRTAP12-2P59991 146 aa7.27□□□□□ -1.25
UBE3B-202ENST00000342494 KRTAP13-4Q3LI77 160 aa7.22□□□□□ -1.25
UBE3B-202ENST00000342494 SRRM2Q9UQ35 2752 aaKnown RBP7.19□□□□□ -1.26
UBE3B-202ENST00000342494 RELNP78509 3460 aa7.18□□□□□ -1.26
UBE3B-202ENST00000342494 ASPMQ8IZT6 3477 aa7.17□□□□□ -1.26
UBE3B-202ENST00000342494 DCHS1Q96JQ0 3298 aa7.17□□□□□ -1.26
UBE3B-202ENST00000342494 ZFHX4Q86UP3 3567 aa7.15□□□□□ -1.26
UBE3B-202ENST00000342494 KRTAP12-1P59990 96 aa7.14□□□□□ -1.27
UBE3B-202ENST00000342494 LAMA5O15230 3695 aa7.12□□□□□ -1.27
UBE3B-202ENST00000342494 DMDP11532 3685 aa7.1□□□□□ -1.27
UBE3B-202ENST00000342494 KRTAP3-1Q9BYR8 98 aa7.08□□□□□ -1.28
UBE3B-202ENST00000342494 FBN1P35555 2871 aaKnown RBP7.04□□□□□ -1.28
UBE3B-202ENST00000342494 KRTAP15-1Q3LI76 137 aa7.04□□□□□ -1.28
UBE3B-202ENST00000342494 FBN3Q75N90 2809 aa7.01□□□□□ -1.29
UBE3B-202ENST00000342494 MUC3AQ02505 3323 aa6.97□□□□□ -1.29
UBE3B-202ENST00000342494 OTOGQ6ZRI0 2925 aa6.96□□□□□ -1.3
UBE3B-202ENST00000342494 MT1HL1P0DM35 61 aa6.96□□□□□ -1.3
UBE3B-202ENST00000342494 CSMD1Q96PZ7 3565 aa6.94□□□□□ -1.3
UBE3B-202ENST00000342494 NBPF19A0A087WUL8 3843 aa6.93□□□□□ -1.3
UBE3B-202ENST00000342494 SMG1Q96Q15 3661 aaKnown RBP6.91□□□□□ -1.3
UBE3B-202ENST00000342494 KRTAP10-6P60371 365 aaPredicted RBP6.87□□□□□ -1.31
UBE3B-202ENST00000342494 ZFHX3Q15911 3703 aa6.87□□□□□ -1.31
UBE3B-202ENST00000342494 KRTAP4-5Q9BYR2 181 aa6.8□□□□□ -1.32
UBE3B-202ENST00000342494 MEGF8Q7Z7M0 2845 aa6.8□□□□□ -1.32
UBE3B-202ENST00000342494 COL7A1Q02388 2944 aa6.79□□□□□ -1.32
UBE3B-202ENST00000342494 SVEP1Q4LDE5 3571 aa6.78□□□□□ -1.32
UBE3B-202ENST00000342494 CRCT1Q9UGL9 99 aa6.75□□□□□ -1.33
UBE3B-202ENST00000342494 KRTAP10-12P60413 245 aa6.75□□□□□ -1.33
UBE3B-202ENST00000342494 KRTAP10-4P60372 401 aaPredicted RBP6.66□□□□□ -1.34
UBE3B-202ENST00000342494 ANK3Q12955 4377 aaKnown RBP6.65□□□□□ -1.35
UBE3B-202ENST00000342494 CUBNO60494 3623 aa6.63□□□□□ -1.35
UBE3B-202ENST00000342494 KRTAP3-3Q9BYR6 98 aa6.61□□□□□ -1.35
UBE3B-202ENST00000342494 SPENQ96T58 3664 aaKnown RBP6.61□□□□□ -1.35
UBE3B-202ENST00000342494 KRTAP3-2Q9BYR7 98 aa6.6□□□□□ -1.35
UBE3B-202ENST00000342494 CSMD2Q7Z408 3487 aa6.56□□□□□ -1.36
UBE3B-202ENST00000342494 KRTAP12-3P60328 96 aa6.52□□□□□ -1.37
UBE3B-202ENST00000342494 BSNQ9UPA5 3926 aa6.47□□□□□ -1.37
UBE3B-202ENST00000342494 TRRAPQ9Y4A5 3859 aa6.44□□□□□ -1.38
UBE3B-202ENST00000342494 LCE3AQ5TA76 89 aa6.4□□□□□ -1.39
UBE3B-202ENST00000342494 INE1O15225 51 aa6.39□□□□□ -1.39
UBE3B-202ENST00000342494 KRTAP8-1Q8IUC2 63 aa6.36□□□□□ -1.39
UBE3B-202ENST00000342494 HUWE1Q7Z6Z7 4374 aaKnown RBP6.33□□□□□ -1.4
UBE3B-202ENST00000342494 LORP23490 312 aaPredicted RBP6.32□□□□□ -1.4
UBE3B-202ENST00000342494 KRTAP23-1A1A580 65 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms