RNA–Protein interactions for RNA: ENST00000334504.11

COL4A6-201, Transcript of collagen type IV alpha 6 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A6, Length 6,700 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-201ENST00000334504 MYO15AQ9UKN7 3530 aa5.27□□□□□ -1.57
COL4A6-201ENST00000334504 SPEGQ15772 3267 aa5.26□□□□□ -1.57
COL4A6-201ENST00000334504 UBR5O95071 2799 aaPredicted RBP5.26□□□□□ -1.57
COL4A6-201ENST00000334504 REV3LO60673 3130 aa5.26□□□□□ -1.57
COL4A6-201ENST00000334504 TRANK1O15050 2925 aa5.24□□□□□ -1.57
COL4A6-201ENST00000334504 NBEAL2Q6ZNJ1 2754 aa5.21□□□□□ -1.58
COL4A6-201ENST00000334504 FREM2Q5SZK8 3169 aa5.21□□□□□ -1.58
COL4A6-201ENST00000334504 CRYBG3Q68DQ2 2970 aa5.19□□□□□ -1.58
COL4A6-201ENST00000334504 EYSQ5T1H1 3165 aa5.19□□□□□ -1.58
COL4A6-201ENST00000334504 NSD1Q96L73 2696 aaPredicted RBP5.19□□□□□ -1.58
COL4A6-201ENST00000334504 KRTAP10-10P60014 251 aa5.17□□□□□ -1.58
COL4A6-201ENST00000334504 WDFY3Q8IZQ1 3526 aa5.14□□□□□ -1.59
COL4A6-201ENST00000334504 ITPR1Q14643 2758 aa5.12□□□□□ -1.59
COL4A6-201ENST00000334504 TACC2O95359 2948 aa5.11□□□□□ -1.59
COL4A6-201ENST00000334504 KMT2BQ9UMN6 2715 aaPredicted RBP5.11□□□□□ -1.59
COL4A6-201ENST00000334504 TENM4Q6N022 2769 aa5.1□□□□□ -1.59
COL4A6-201ENST00000334504 FRYLO94915 3013 aa5.1□□□□□ -1.59
COL4A6-201ENST00000334504 XP32Q5T750 250 aa5.09□□□□□ -1.59
COL4A6-201ENST00000334504 FLNCQ14315 2725 aa5.07□□□□□ -1.6
COL4A6-201ENST00000334504 DMXL2Q8TDJ6 3036 aa5.06□□□□□ -1.6
COL4A6-201ENST00000334504 DCHS1Q96JQ0 3298 aa5.06□□□□□ -1.6
COL4A6-201ENST00000334504 HIVEP1P15822 2718 aa5.06□□□□□ -1.6
COL4A6-201ENST00000334504 COL12A1Q99715 3063 aa5.05□□□□□ -1.6
COL4A6-201ENST00000334504 ASPMQ8IZT6 3477 aa5.05□□□□□ -1.6
COL4A6-201ENST00000334504 KRTAP1-4P0C5Y4 121 aa5.05□□□□□ -1.6
COL4A6-201ENST00000334504 UTP20O75691 2785 aaKnown RBP5.03□□□□□ -1.6
COL4A6-201ENST00000334504 ATMQ13315 3056 aa5.03□□□□□ -1.6
COL4A6-201ENST00000334504 KRTAP12-2P59991 146 aa5.01□□□□□ -1.61
COL4A6-201ENST00000334504 LRBAP50851 2863 aa5□□□□□ -1.61
COL4A6-201ENST00000334504 CFAP47Q6ZTR5 3102 aa5□□□□□ -1.61
COL4A6-201ENST00000334504 KALRNO60229 2985 aa4.99□□□□□ -1.61
COL4A6-201ENST00000334504 BOD1L1Q8NFC6 3051 aa4.98□□□□□ -1.61
COL4A6-201ENST00000334504 TPRXLQ17RH7 258 aa4.97□□□□□ -1.61
COL4A6-201ENST00000334504 PRO2289Q9P1D8 64 aa4.97□□□□□ -1.61
COL4A6-201ENST00000334504 APCP25054 2843 aa4.96□□□□□ -1.62
COL4A6-201ENST00000334504 ASH1LQ9NR48 2969 aaKnown RBP4.94□□□□□ -1.62
COL4A6-201ENST00000334504 KRTAP13-3Q3SY46 172 aa4.93□□□□□ -1.62
COL4A6-201ENST00000334504 ZFHX4Q86UP3 3567 aa4.93□□□□□ -1.62
COL4A6-201ENST00000334504 CSMD1Q96PZ7 3565 aa4.92□□□□□ -1.62
COL4A6-201ENST00000334504 ZZEF1O43149 2961 aa4.91□□□□□ -1.62
COL4A6-201ENST00000334504 CELSR2Q9HCU4 2923 aa4.89□□□□□ -1.63
COL4A6-201ENST00000334504 NBEAQ8NFP9 2946 aa4.89□□□□□ -1.63
COL4A6-201ENST00000334504 KRTAP13-4Q3LI77 160 aa4.89□□□□□ -1.63
COL4A6-201ENST00000334504 ADGRG4Q8IZF6 3080 aa4.88□□□□□ -1.63
COL4A6-201ENST00000334504 LAMA5O15230 3695 aa4.88□□□□□ -1.63
COL4A6-201ENST00000334504 KRTAP12-1P59990 96 aa4.86□□□□□ -1.63
COL4A6-201ENST00000334504 LOC400499M0QZD8 3231 aa4.86□□□□□ -1.63
COL4A6-201ENST00000334504 DMDP11532 3685 aa4.85□□□□□ -1.63
COL4A6-201ENST00000334504 DCHS2Q6V1P9 2916 aa4.83□□□□□ -1.64
COL4A6-201ENST00000334504 TENM1Q9UKZ4 2725 aa4.82□□□□□ -1.64
COL4A6-201ENST00000334504 NIPBLQ6KC79 2804 aaeCLIP4.81□□□□□ -1.64
COL4A6-201ENST00000334504 SMG1Q96Q15 3661 aaKnown RBP4.8□□□□□ -1.64
COL4A6-201ENST00000334504 TNRC18O15417 2968 aaPredicted RBP4.8□□□□□ -1.64
COL4A6-201ENST00000334504 KRTAP15-1Q3LI76 137 aa4.78□□□□□ -1.64
COL4A6-201ENST00000334504 TENM2Q9NT68 2774 aa4.76□□□□□ -1.65
COL4A6-201ENST00000334504 TENM3Q9P273 2699 aa4.76□□□□□ -1.65
COL4A6-201ENST00000334504 CRCT1Q9UGL9 99 aa4.75□□□□□ -1.65
COL4A6-201ENST00000334504 INE1O15225 51 aa4.75□□□□□ -1.65
COL4A6-201ENST00000334504 DMXL1Q9Y485 3027 aa4.74□□□□□ -1.65
COL4A6-201ENST00000334504 NF1P21359 2839 aa4.74□□□□□ -1.65
COL4A6-201ENST00000334504 RELNP78509 3460 aa4.72□□□□□ -1.65
COL4A6-201ENST00000334504 KRTAP3-1Q9BYR8 98 aa4.71□□□□□ -1.66
COL4A6-201ENST00000334504 ZANQ9Y493 2812 aa4.7□□□□□ -1.66
COL4A6-201ENST00000334504 PKD1L1Q8TDX9 2849 aa4.68□□□□□ -1.66
COL4A6-201ENST00000334504 SPENQ96T58 3664 aaKnown RBP4.66□□□□□ -1.66
COL4A6-201ENST00000334504 SVEP1Q4LDE5 3571 aa4.66□□□□□ -1.66
COL4A6-201ENST00000334504 NBPF19A0A087WUL8 3843 aa4.64□□□□□ -1.67
COL4A6-201ENST00000334504 CELSR1Q9NYQ6 3014 aa4.63□□□□□ -1.67
COL4A6-201ENST00000334504 KRTAP10-6P60371 365 aaPredicted RBP4.62□□□□□ -1.67
COL4A6-201ENST00000334504 FBN2P35556 2912 aa4.61□□□□□ -1.67
COL4A6-201ENST00000334504 ZFHX3Q15911 3703 aa4.59□□□□□ -1.67
COL4A6-201ENST00000334504 HRNRQ86YZ3 2850 aaPredicted RBP4.59□□□□□ -1.68
COL4A6-201ENST00000334504 TGP01266 2768 aa4.58□□□□□ -1.68
COL4A6-201ENST00000334504 VWFP04275 2813 aa4.58□□□□□ -1.68
COL4A6-201ENST00000334504 BSNQ9UPA5 3926 aa4.57□□□□□ -1.68
COL4A6-201ENST00000334504 MXRA5Q9NR99 2828 aa4.54□□□□□ -1.68
COL4A6-201ENST00000334504 PDZD2O15018 2839 aa4.5□□□□□ -1.69
COL4A6-201ENST00000334504 MUC3AQ02505 3323 aa4.45□□□□□ -1.7
COL4A6-201ENST00000334504 CUBNO60494 3623 aa4.43□□□□□ -1.7
COL4A6-201ENST00000334504 VPS13CQ709C8 3753 aa4.43□□□□□ -1.7
COL4A6-201ENST00000334504 KRTAP3-2Q9BYR7 98 aa4.42□□□□□ -1.7
COL4A6-201ENST00000334504 SRRM2Q9UQ35 2752 aaKnown RBP4.39□□□□□ -1.71
COL4A6-201ENST00000334504 ANK3Q12955 4377 aaKnown RBP4.38□□□□□ -1.71
COL4A6-201ENST00000334504 KRTAP10-12P60413 245 aa4.38□□□□□ -1.71
COL4A6-201ENST00000334504 KRTAP3-3Q9BYR6 98 aa4.37□□□□□ -1.71
COL4A6-201ENST00000334504 CSMD2Q7Z408 3487 aa4.35□□□□□ -1.71
COL4A6-201ENST00000334504 LORP23490 312 aaPredicted RBP4.35□□□□□ -1.71
COL4A6-201ENST00000334504 AKAP9Q99996 3911 aa4.34□□□□□ -1.71
COL4A6-201ENST00000334504 FBN1P35555 2871 aaKnown RBP4.31□□□□□ -1.72
COL4A6-201ENST00000334504 KRTAP12-3P60328 96 aa4.3□□□□□ -1.72
COL4A6-201ENST00000334504 ALMS1Q8TCU4 4167 aa4.28□□□□□ -1.72
COL4A6-201ENST00000334504 LCE3AQ5TA76 89 aa4.28□□□□□ -1.72
COL4A6-201ENST00000334504 FBN3Q75N90 2809 aa4.28□□□□□ -1.72
COL4A6-201ENST00000334504 KRTAP4-5Q9BYR2 181 aa4.26□□□□□ -1.73
COL4A6-201ENST00000334504 KRTAP23-1A1A580 65 aa4.26□□□□□ -1.73
COL4A6-201ENST00000334504 HUWE1Q7Z6Z7 4374 aaKnown RBP4.26□□□□□ -1.73
COL4A6-201ENST00000334504 OTOGQ6ZRI0 2925 aa4.25□□□□□ -1.73
COL4A6-201ENST00000334504 MT1HL1P0DM35 61 aa4.19□□□□□ -1.74
COL4A6-201ENST00000334504 TRRAPQ9Y4A5 3859 aa4.19□□□□□ -1.74
COL4A6-201ENST00000334504 KRTAP10-5P60370 271 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms