RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 ITPR2Q14571 2701 aa7.05□□□□□ -1.28
COL3A1-201ENST00000304636 BOD1L1Q8NFC6 3051 aa7.04□□□□□ -1.28
COL3A1-201ENST00000304636 COL6A3P12111 3177 aa7.03□□□□□ -1.28
COL3A1-201ENST00000304636 FRYLO94915 3013 aa7.03□□□□□ -1.28
COL3A1-201ENST00000304636 ASH1LQ9NR48 2969 aaKnown RBP7.02□□□□□ -1.29
COL3A1-201ENST00000304636 FLNCQ14315 2725 aa7□□□□□ -1.29
COL3A1-201ENST00000304636 ZZEF1O43149 2961 aa7□□□□□ -1.29
COL3A1-201ENST00000304636 UTP20O75691 2785 aaKnown RBP6.99□□□□□ -1.29
COL3A1-201ENST00000304636 DMXL2Q8TDJ6 3036 aa6.99□□□□□ -1.29
COL3A1-201ENST00000304636 TACC2O95359 2948 aa6.99□□□□□ -1.29
COL3A1-201ENST00000304636 COL12A1Q99715 3063 aa6.98□□□□□ -1.29
COL3A1-201ENST00000304636 KMT2BQ9UMN6 2715 aaPredicted RBP6.98□□□□□ -1.29
COL3A1-201ENST00000304636 H0YAA0 97 aa6.93□□□□□ -1.3
COL3A1-201ENST00000304636 HIVEP1P15822 2718 aa6.91□□□□□ -1.3
COL3A1-201ENST00000304636 C10orf95Q9H7T3 257 aa6.91□□□□□ -1.3
COL3A1-201ENST00000304636 KRTAP1-4P0C5Y4 121 aa6.89□□□□□ -1.31
COL3A1-201ENST00000304636 NIPBLQ6KC79 2804 aaeCLIP6.89□□□□□ -1.31
COL3A1-201ENST00000304636 SPEGQ15772 3267 aa6.87□□□□□ -1.31
COL3A1-201ENST00000304636 SPTBN5Q9NRC6 3674 aaKnown RBP6.86□□□□□ -1.31
COL3A1-201ENST00000304636 REV3LO60673 3130 aa6.85□□□□□ -1.31
COL3A1-201ENST00000304636 HRNRQ86YZ3 2850 aaPredicted RBP6.83□□□□□ -1.32
COL3A1-201ENST00000304636 TNP1P09430 55 aa6.83□□□□□ -1.32
COL3A1-201ENST00000304636 CFAP47Q6ZTR5 3102 aa6.83□□□□□ -1.32
COL3A1-201ENST00000304636 CELSR2Q9HCU4 2923 aa6.81□□□□□ -1.32
COL3A1-201ENST00000304636 PP632Q6XCG6 107 aa6.79□□□□□ -1.32
COL3A1-201ENST00000304636 ZANQ9Y493 2812 aa6.78□□□□□ -1.32
COL3A1-201ENST00000304636 KRTAP13-3Q3SY46 172 aa6.77□□□□□ -1.33
COL3A1-201ENST00000304636 EYSQ5T1H1 3165 aa6.76□□□□□ -1.33
COL3A1-201ENST00000304636 TNRC18O15417 2968 aaPredicted RBP6.75□□□□□ -1.33
COL3A1-201ENST00000304636 P0C880 135 aa6.74□□□□□ -1.33
COL3A1-201ENST00000304636 XP32Q5T750 250 aa6.74□□□□□ -1.33
COL3A1-201ENST00000304636 DCHS2Q6V1P9 2916 aa6.73□□□□□ -1.33
COL3A1-201ENST00000304636 USP34Q70CQ2 3546 aa6.72□□□□□ -1.33
COL3A1-201ENST00000304636 MYO15AQ9UKN7 3530 aa6.72□□□□□ -1.33
COL3A1-201ENST00000304636 FBN2P35556 2912 aa6.66□□□□□ -1.34
COL3A1-201ENST00000304636 LOC400499M0QZD8 3231 aa6.64□□□□□ -1.35
COL3A1-201ENST00000304636 DMXL1Q9Y485 3027 aa6.61□□□□□ -1.35
COL3A1-201ENST00000304636 KRTAP10-8P60410 259 aa6.58□□□□□ -1.36
COL3A1-201ENST00000304636 NF1P21359 2839 aa6.58□□□□□ -1.36
COL3A1-201ENST00000304636 CRYBG3Q68DQ2 2970 aa6.57□□□□□ -1.36
COL3A1-201ENST00000304636 KRTAP21-3Q3LHN1 58 aa6.56□□□□□ -1.36
COL3A1-201ENST00000304636 TENM4Q6N022 2769 aa6.55□□□□□ -1.36
COL3A1-201ENST00000304636 TPRXLQ17RH7 258 aa6.54□□□□□ -1.36
COL3A1-201ENST00000304636 TGP01266 2768 aa6.52□□□□□ -1.37
COL3A1-201ENST00000304636 MXRA5Q9NR99 2828 aa6.5□□□□□ -1.37
COL3A1-201ENST00000304636 WDFY3Q8IZQ1 3526 aa6.48□□□□□ -1.37
COL3A1-201ENST00000304636 CELSR1Q9NYQ6 3014 aa6.46□□□□□ -1.38
COL3A1-201ENST00000304636 A0A1B0GVY2 172 aa6.45□□□□□ -1.38
COL3A1-201ENST00000304636 KRTAP12-2P59991 146 aa6.45□□□□□ -1.38
COL3A1-201ENST00000304636 TENM3Q9P273 2699 aa6.42□□□□□ -1.38
COL3A1-201ENST00000304636 KRTAP3-1Q9BYR8 98 aa6.37□□□□□ -1.39
COL3A1-201ENST00000304636 ZFHX4Q86UP3 3567 aa6.36□□□□□ -1.39
COL3A1-201ENST00000304636 KRTAP12-1P59990 96 aa6.35□□□□□ -1.39
COL3A1-201ENST00000304636 RELNP78509 3460 aa6.33□□□□□ -1.4
COL3A1-201ENST00000304636 TENM1Q9UKZ4 2725 aa6.32□□□□□ -1.4
COL3A1-201ENST00000304636 DCHS1Q96JQ0 3298 aa6.31□□□□□ -1.4
COL3A1-201ENST00000304636 KRTAP13-4Q3LI77 160 aa6.3□□□□□ -1.4
COL3A1-201ENST00000304636 ASPMQ8IZT6 3477 aa6.28□□□□□ -1.4
COL3A1-201ENST00000304636 KRTAP10-10P60014 251 aa6.26□□□□□ -1.41
COL3A1-201ENST00000304636 CSMD1Q96PZ7 3565 aa6.25□□□□□ -1.41
COL3A1-201ENST00000304636 PDZD2O15018 2839 aa6.23□□□□□ -1.41
COL3A1-201ENST00000304636 TENM2Q9NT68 2774 aa6.23□□□□□ -1.41
COL3A1-201ENST00000304636 KRTAP10-6P60371 365 aaPredicted RBP6.22□□□□□ -1.41
COL3A1-201ENST00000304636 LAMA5O15230 3695 aa6.22□□□□□ -1.41
COL3A1-201ENST00000304636 PRO2289Q9P1D8 64 aa6.21□□□□□ -1.41
COL3A1-201ENST00000304636 DMDP11532 3685 aa6.21□□□□□ -1.42
COL3A1-201ENST00000304636 SMG1Q96Q15 3661 aaKnown RBP6.19□□□□□ -1.42
COL3A1-201ENST00000304636 PKD1L1Q8TDX9 2849 aa6.08□□□□□ -1.44
COL3A1-201ENST00000304636 KRTAP15-1Q3LI76 137 aa6.07□□□□□ -1.44
COL3A1-201ENST00000304636 VWFP04275 2813 aa6.05□□□□□ -1.44
COL3A1-201ENST00000304636 SVEP1Q4LDE5 3571 aa6.03□□□□□ -1.44
COL3A1-201ENST00000304636 ANK3Q12955 4377 aaKnown RBP6.01□□□□□ -1.45
COL3A1-201ENST00000304636 KRTAP3-2Q9BYR7 98 aa6□□□□□ -1.45
COL3A1-201ENST00000304636 KRTAP3-3Q9BYR6 98 aa5.97□□□□□ -1.45
COL3A1-201ENST00000304636 FBN1P35555 2871 aaKnown RBP5.97□□□□□ -1.45
COL3A1-201ENST00000304636 MUC3AQ02505 3323 aa5.97□□□□□ -1.45
COL3A1-201ENST00000304636 NBPF19A0A087WUL8 3843 aa5.95□□□□□ -1.46
COL3A1-201ENST00000304636 FBN3Q75N90 2809 aa5.94□□□□□ -1.46
COL3A1-201ENST00000304636 OTOGQ6ZRI0 2925 aa5.94□□□□□ -1.46
COL3A1-201ENST00000304636 MEGF8Q7Z7M0 2845 aa5.89□□□□□ -1.47
COL3A1-201ENST00000304636 SRRM2Q9UQ35 2752 aaKnown RBP5.87□□□□□ -1.47
COL3A1-201ENST00000304636 CUBNO60494 3623 aa5.84□□□□□ -1.47
COL3A1-201ENST00000304636 SPENQ96T58 3664 aaKnown RBP5.84□□□□□ -1.47
COL3A1-201ENST00000304636 INE1O15225 51 aa5.83□□□□□ -1.48
COL3A1-201ENST00000304636 MT1HL1P0DM35 61 aa5.77□□□□□ -1.49
COL3A1-201ENST00000304636 TRRAPQ9Y4A5 3859 aa5.76□□□□□ -1.49
COL3A1-201ENST00000304636 KRTAP10-4P60372 401 aaPredicted RBP5.74□□□□□ -1.49
COL3A1-201ENST00000304636 BSNQ9UPA5 3926 aa5.74□□□□□ -1.49
COL3A1-201ENST00000304636 HUWE1Q7Z6Z7 4374 aaKnown RBP5.72□□□□□ -1.49
COL3A1-201ENST00000304636 CSMD2Q7Z408 3487 aa5.71□□□□□ -1.49
COL3A1-201ENST00000304636 ZFHX3Q15911 3703 aa5.7□□□□□ -1.5
COL3A1-201ENST00000304636 KRTAP23-1A1A580 65 aa5.7□□□□□ -1.5
COL3A1-201ENST00000304636 COL7A1Q02388 2944 aa5.66□□□□□ -1.5
COL3A1-201ENST00000304636 KRTAP10-12P60413 245 aa5.61□□□□□ -1.51
COL3A1-201ENST00000304636 VPS13CQ709C8 3753 aa5.58□□□□□ -1.52
COL3A1-201ENST00000304636 CRCT1Q9UGL9 99 aa5.56□□□□□ -1.52
COL3A1-201ENST00000304636 KRTAP12-3P60328 96 aa5.52□□□□□ -1.53
COL3A1-201ENST00000304636 LORP23490 312 aaPredicted RBP5.52□□□□□ -1.53
COL3A1-201ENST00000304636 LCE3AQ5TA76 89 aa5.49□□□□□ -1.53
COL3A1-201ENST00000304636 ALMS1Q8TCU4 4167 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms