RNA–Protein interactions for RNA: ENST00000274938.7

SCUBE3-201, Transcript of signal peptide, CUB domain and EGF like domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCUBE3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3-201ENST00000274938 MAP1AP78559 2803 aaPredicted RBP4.67□□□□□ -1.66
SCUBE3-201ENST00000274938 CFAP47Q6ZTR5 3102 aa4.67□□□□□ -1.66
SCUBE3-201ENST00000274938 DMXL2Q8TDJ6 3036 aa4.66□□□□□ -1.66
SCUBE3-201ENST00000274938 NBEAL1Q6ZS30 2694 aa4.64□□□□□ -1.67
SCUBE3-201ENST00000274938 LAMA5O15230 3695 aa4.64□□□□□ -1.67
SCUBE3-201ENST00000274938 LOC400499M0QZD8 3231 aa4.64□□□□□ -1.67
SCUBE3-201ENST00000274938 LRBAP50851 2863 aa4.64□□□□□ -1.67
SCUBE3-201ENST00000274938 TEP1Q99973 2627 aaKnown RBP4.63□□□□□ -1.67
SCUBE3-201ENST00000274938 SETXQ7Z333 2677 aaKnown RBP4.62□□□□□ -1.67
SCUBE3-201ENST00000274938 KRTAP10-8P60410 259 aa4.62□□□□□ -1.67
SCUBE3-201ENST00000274938 UNC79Q9P2D8 2635 aa4.6□□□□□ -1.67
SCUBE3-201ENST00000274938 COL6A5A8TX70 2615 aa4.6□□□□□ -1.67
SCUBE3-201ENST00000274938 GCN1Q92616 2671 aaKnown RBP4.6□□□□□ -1.67
SCUBE3-201ENST00000274938 MUC3AQ02505 3323 aa4.59□□□□□ -1.67
SCUBE3-201ENST00000274938 XP32Q5T750 250 aa4.58□□□□□ -1.68
SCUBE3-201ENST00000274938 ITPR2Q14571 2701 aa4.58□□□□□ -1.68
SCUBE3-201ENST00000274938 ATMQ13315 3056 aa4.58□□□□□ -1.68
SCUBE3-201ENST00000274938 ZFHX4Q86UP3 3567 aa4.58□□□□□ -1.68
SCUBE3-201ENST00000274938 IGSF10Q6WRI0 2623 aa4.57□□□□□ -1.68
SCUBE3-201ENST00000274938 STAB2Q8WWQ8 2551 aa4.55□□□□□ -1.68
SCUBE3-201ENST00000274938 ADGRG4Q8IZF6 3080 aa4.55□□□□□ -1.68
SCUBE3-201ENST00000274938 KRTAP1-4P0C5Y4 121 aa4.55□□□□□ -1.68
SCUBE3-201ENST00000274938 CRYBG3Q68DQ2 2970 aa4.54□□□□□ -1.68
SCUBE3-201ENST00000274938 NOTCH1P46531 2555 aa4.54□□□□□ -1.68
SCUBE3-201ENST00000274938 KALRNO60229 2985 aa4.53□□□□□ -1.68
SCUBE3-201ENST00000274938 PRO2289Q9P1D8 64 aa4.52□□□□□ -1.69
SCUBE3-201ENST00000274938 COL12A1Q99715 3063 aa4.52□□□□□ -1.69
SCUBE3-201ENST00000274938 RELNP78509 3460 aa4.52□□□□□ -1.69
SCUBE3-201ENST00000274938 A0A1B0GVY2 172 aa4.51□□□□□ -1.69
SCUBE3-201ENST00000274938 TPRXLQ17RH7 258 aa4.5□□□□□ -1.69
SCUBE3-201ENST00000274938 NBEAL2Q6ZNJ1 2754 aa4.5□□□□□ -1.69
SCUBE3-201ENST00000274938 NBPF19A0A087WUL8 3843 aa4.49□□□□□ -1.69
SCUBE3-201ENST00000274938 DCHS1Q96JQ0 3298 aa4.48□□□□□ -1.69
SCUBE3-201ENST00000274938 UBR5O95071 2799 aaPredicted RBP4.48□□□□□ -1.69
SCUBE3-201ENST00000274938 NSD1Q96L73 2696 aaPredicted RBP4.47□□□□□ -1.69
SCUBE3-201ENST00000274938 NBEAQ8NFP9 2946 aa4.47□□□□□ -1.69
SCUBE3-201ENST00000274938 UTP20O75691 2785 aaKnown RBP4.46□□□□□ -1.7
SCUBE3-201ENST00000274938 KRTAP21-3Q3LHN1 58 aa4.46□□□□□ -1.7
SCUBE3-201ENST00000274938 TACC2O95359 2948 aa4.43□□□□□ -1.7
SCUBE3-201ENST00000274938 SMG1Q96Q15 3661 aaKnown RBP4.43□□□□□ -1.7
SCUBE3-201ENST00000274938 KRTAP10-10P60014 251 aa4.42□□□□□ -1.7
SCUBE3-201ENST00000274938 ASH1LQ9NR48 2969 aaKnown RBP4.42□□□□□ -1.7
SCUBE3-201ENST00000274938 SPENQ96T58 3664 aaKnown RBP4.42□□□□□ -1.7
SCUBE3-201ENST00000274938 ZZEF1O43149 2961 aa4.41□□□□□ -1.7
SCUBE3-201ENST00000274938 ITPR1Q14643 2758 aa4.4□□□□□ -1.7
SCUBE3-201ENST00000274938 KRTAP13-3Q3SY46 172 aa4.4□□□□□ -1.71
SCUBE3-201ENST00000274938 CSMD1Q96PZ7 3565 aa4.39□□□□□ -1.71
SCUBE3-201ENST00000274938 BSNQ9UPA5 3926 aa4.38□□□□□ -1.71
SCUBE3-201ENST00000274938 FLNCQ14315 2725 aa4.38□□□□□ -1.71
SCUBE3-201ENST00000274938 KRTAP13-4Q3LI77 160 aa4.38□□□□□ -1.71
SCUBE3-201ENST00000274938 KRTAP12-2P59991 146 aa4.35□□□□□ -1.71
SCUBE3-201ENST00000274938 APCP25054 2843 aa4.34□□□□□ -1.71
SCUBE3-201ENST00000274938 HRNRQ86YZ3 2850 aaPredicted RBP4.32□□□□□ -1.72
SCUBE3-201ENST00000274938 SVEP1Q4LDE5 3571 aa4.32□□□□□ -1.72
SCUBE3-201ENST00000274938 HIVEP1P15822 2718 aa4.31□□□□□ -1.72
SCUBE3-201ENST00000274938 CELSR2Q9HCU4 2923 aa4.3□□□□□ -1.72
SCUBE3-201ENST00000274938 KRTAP12-1P59990 96 aa4.29□□□□□ -1.72
SCUBE3-201ENST00000274938 DCHS2Q6V1P9 2916 aa4.25□□□□□ -1.73
SCUBE3-201ENST00000274938 NIPBLQ6KC79 2804 aaeCLIP4.24□□□□□ -1.73
SCUBE3-201ENST00000274938 INE1O15225 51 aa4.24□□□□□ -1.73
SCUBE3-201ENST00000274938 ZANQ9Y493 2812 aa4.23□□□□□ -1.73
SCUBE3-201ENST00000274938 VPS13CQ709C8 3753 aa4.21□□□□□ -1.74
SCUBE3-201ENST00000274938 ZFHX3Q15911 3703 aa4.21□□□□□ -1.74
SCUBE3-201ENST00000274938 TENM4Q6N022 2769 aa4.2□□□□□ -1.74
SCUBE3-201ENST00000274938 KRTAP15-1Q3LI76 137 aa4.19□□□□□ -1.74
SCUBE3-201ENST00000274938 CSMD2Q7Z408 3487 aa4.19□□□□□ -1.74
SCUBE3-201ENST00000274938 FBN2P35556 2912 aa4.18□□□□□ -1.74
SCUBE3-201ENST00000274938 CELSR1Q9NYQ6 3014 aa4.16□□□□□ -1.74
SCUBE3-201ENST00000274938 KRTAP3-1Q9BYR8 98 aa4.14□□□□□ -1.75
SCUBE3-201ENST00000274938 CUBNO60494 3623 aa4.13□□□□□ -1.75
SCUBE3-201ENST00000274938 CRCT1Q9UGL9 99 aa4.11□□□□□ -1.75
SCUBE3-201ENST00000274938 NF1P21359 2839 aa4.1□□□□□ -1.75
SCUBE3-201ENST00000274938 KRTAP10-6P60371 365 aaPredicted RBP4.09□□□□□ -1.75
SCUBE3-201ENST00000274938 ANK3Q12955 4377 aaKnown RBP4.05□□□□□ -1.76
SCUBE3-201ENST00000274938 TENM1Q9UKZ4 2725 aa4.05□□□□□ -1.76
SCUBE3-201ENST00000274938 MXRA5Q9NR99 2828 aa4.04□□□□□ -1.76
SCUBE3-201ENST00000274938 ZNF469Q96JG9 3925 aaPredicted RBP4.02□□□□□ -1.77
SCUBE3-201ENST00000274938 AKAP9Q99996 3911 aa4.02□□□□□ -1.77
SCUBE3-201ENST00000274938 PDZD2O15018 2839 aa4.02□□□□□ -1.77
SCUBE3-201ENST00000274938 TRRAPQ9Y4A5 3859 aa4.01□□□□□ -1.77
SCUBE3-201ENST00000274938 TENM3Q9P273 2699 aa3.97□□□□□ -1.77
SCUBE3-201ENST00000274938 PKD1L1Q8TDX9 2849 aa3.97□□□□□ -1.77
SCUBE3-201ENST00000274938 TGP01266 2768 aa3.96□□□□□ -1.77
SCUBE3-201ENST00000274938 KRTAP23-1A1A580 65 aa3.96□□□□□ -1.78
SCUBE3-201ENST00000274938 TENM2Q9NT68 2774 aa3.95□□□□□ -1.78
SCUBE3-201ENST00000274938 VWFP04275 2813 aa3.92□□□□□ -1.78
SCUBE3-201ENST00000274938 KRTAP10-12P60413 245 aa3.92□□□□□ -1.78
SCUBE3-201ENST00000274938 KRTAP3-2Q9BYR7 98 aa3.92□□□□□ -1.78
SCUBE3-201ENST00000274938 OTOGQ6ZRI0 2925 aa3.91□□□□□ -1.78
SCUBE3-201ENST00000274938 KRTAP3-3Q9BYR6 98 aa3.85□□□□□ -1.79
SCUBE3-201ENST00000274938 FBN1P35555 2871 aaKnown RBP3.85□□□□□ -1.79
SCUBE3-201ENST00000274938 KRTAP12-3P60328 96 aa3.84□□□□□ -1.79
SCUBE3-201ENST00000274938 SRRM2Q9UQ35 2752 aaKnown RBP3.84□□□□□ -1.79
SCUBE3-201ENST00000274938 HUWE1Q7Z6Z7 4374 aaKnown RBP3.79□□□□□ -1.8
SCUBE3-201ENST00000274938 CSMD3Q7Z407 3707 aa3.76□□□□□ -1.81
SCUBE3-201ENST00000274938 LCE3AQ5TA76 89 aa3.74□□□□□ -1.81
SCUBE3-201ENST00000274938 MT1HL1P0DM35 61 aa3.74□□□□□ -1.81
SCUBE3-201ENST00000274938 COL7A1Q02388 2944 aa3.71□□□□□ -1.82
SCUBE3-201ENST00000274938 CMYA5Q8N3K9 4069 aa3.69□□□□□ -1.82
SCUBE3-201ENST00000274938 KRTAP10-5P60370 271 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms