RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 TENM1Q9UKZ4 2725 aa7.13□□□□□ -1.27
CCDC88A-201ENST00000263630 KRTAP13-4Q3LI77 160 aa7.1□□□□□ -1.27
CCDC88A-201ENST00000263630 TGP01266 2768 aa7.09□□□□□ -1.27
CCDC88A-201ENST00000263630 XIRP2A4UGR9 3374 aa7.06□□□□□ -1.28
CCDC88A-201ENST00000263630 HIVEP1P15822 2718 aa7.06□□□□□ -1.28
CCDC88A-201ENST00000263630 COL12A1Q99715 3063 aa7.05□□□□□ -1.28
CCDC88A-201ENST00000263630 INE1O15225 51 aa7.05□□□□□ -1.28
CCDC88A-201ENST00000263630 KRTAP21-3Q3LHN1 58 aa7.04□□□□□ -1.28
CCDC88A-201ENST00000263630 VPS13AQ96RL7 3174 aa7.04□□□□□ -1.28
CCDC88A-201ENST00000263630 KRTAP1-4P0C5Y4 121 aa7.02□□□□□ -1.29
CCDC88A-201ENST00000263630 PRUNE2Q8WUY3 3088 aa7.01□□□□□ -1.29
CCDC88A-201ENST00000263630 CHD7Q9P2D1 2997 aa6.99□□□□□ -1.29
CCDC88A-201ENST00000263630 RANBP2P49792 3224 aaKnown RBP6.98□□□□□ -1.29
CCDC88A-201ENST00000263630 DMXL2Q8TDJ6 3036 aa6.98□□□□□ -1.29
CCDC88A-201ENST00000263630 CHD9Q3L8U1 2897 aa6.98□□□□□ -1.29
CCDC88A-201ENST00000263630 KRTAP15-1Q3LI76 137 aa6.98□□□□□ -1.29
CCDC88A-201ENST00000263630 NF1P21359 2839 aa6.98□□□□□ -1.29
CCDC88A-201ENST00000263630 KRTAP13-3Q3SY46 172 aa6.97□□□□□ -1.29
CCDC88A-201ENST00000263630 UNC80Q8N2C7 3258 aa6.97□□□□□ -1.29
CCDC88A-201ENST00000263630 FLNCQ14315 2725 aa6.97□□□□□ -1.29
CCDC88A-201ENST00000263630 CELSR3Q9NYQ7 3312 aa6.96□□□□□ -1.29
CCDC88A-201ENST00000263630 MKI67P46013 3256 aaKnown RBP6.94□□□□□ -1.3
CCDC88A-201ENST00000263630 LAMA1P25391 3075 aa6.89□□□□□ -1.31
CCDC88A-201ENST00000263630 PDZD2O15018 2839 aa6.89□□□□□ -1.31
CCDC88A-201ENST00000263630 CELSR2Q9HCU4 2923 aa6.88□□□□□ -1.31
CCDC88A-201ENST00000263630 NIPBLQ6KC79 2804 aaeCLIP6.83□□□□□ -1.321e-10■□□□□ 8.6
CCDC88A-201ENST00000263630 KRTAP12-1P59990 96 aa6.8□□□□□ -1.32
CCDC88A-201ENST00000263630 LAMA3Q16787 3333 aa6.75□□□□□ -1.33
CCDC88A-201ENST00000263630 TENM4Q6N022 2769 aa6.72□□□□□ -1.33
CCDC88A-201ENST00000263630 TNRC18O15417 2968 aaPredicted RBP6.71□□□□□ -1.33
CCDC88A-201ENST00000263630 BOD1L1Q8NFC6 3051 aa6.7□□□□□ -1.34
CCDC88A-201ENST00000263630 CELSR1Q9NYQ6 3014 aa6.69□□□□□ -1.34
CCDC88A-201ENST00000263630 HTTP42858 3142 aa6.69□□□□□ -1.34
CCDC88A-201ENST00000263630 ZZEF1O43149 2961 aa6.69□□□□□ -1.34
CCDC88A-201ENST00000263630 ATMQ13315 3056 aa6.69□□□□□ -1.34
CCDC88A-201ENST00000263630 DCHS2Q6V1P9 2916 aa6.68□□□□□ -1.34
CCDC88A-201ENST00000263630 VCANP13611 3396 aa6.66□□□□□ -1.34
CCDC88A-201ENST00000263630 TACC2O95359 2948 aa6.66□□□□□ -1.34
CCDC88A-201ENST00000263630 CFAP47Q6ZTR5 3102 aa6.65□□□□□ -1.34
CCDC88A-201ENST00000263630 USP34Q70CQ2 3546 aa6.65□□□□□ -1.34
CCDC88A-201ENST00000263630 COL6A3P12111 3177 aa6.64□□□□□ -1.35
CCDC88A-201ENST00000263630 ADGRG4Q8IZF6 3080 aa6.64□□□□□ -1.35
CCDC88A-201ENST00000263630 SRRM2Q9UQ35 2752 aaKnown RBP6.62□□□□□ -1.35
CCDC88A-201ENST00000263630 SPEGQ15772 3267 aa6.61□□□□□ -1.35
CCDC88A-201ENST00000263630 DNAH14Q0VDD8 3507 aa6.59□□□□□ -1.35
CCDC88A-201ENST00000263630 BRCA2P51587 3418 aa6.57□□□□□ -1.36
CCDC88A-201ENST00000263630 ZANQ9Y493 2812 aa6.54□□□□□ -1.36
CCDC88A-201ENST00000263630 DMXL1Q9Y485 3027 aa6.54□□□□□ -1.36
CCDC88A-201ENST00000263630 NBEAQ8NFP9 2946 aa6.53□□□□□ -1.36
CCDC88A-201ENST00000263630 VWFP04275 2813 aa6.49□□□□□ -1.37
CCDC88A-201ENST00000263630 TENM2Q9NT68 2774 aa6.49□□□□□ -1.37
CCDC88A-201ENST00000263630 KRTAP10-12P60413 245 aa6.47□□□□□ -1.37
CCDC88A-201ENST00000263630 CRCT1Q9UGL9 99 aa6.46□□□□□ -1.38
CCDC88A-201ENST00000263630 PKD1L1Q8TDX9 2849 aa6.45□□□□□ -1.38
CCDC88A-201ENST00000263630 ZFHX4Q86UP3 3567 aa6.43□□□□□ -1.38
CCDC88A-201ENST00000263630 CDH23Q9H251 3354 aa6.43□□□□□ -1.38
CCDC88A-201ENST00000263630 FBN2P35556 2912 aa6.37□□□□□ -1.39
CCDC88A-201ENST00000263630 KRTAP23-1A1A580 65 aa6.31□□□□□ -1.4
CCDC88A-201ENST00000263630 COL7A1Q02388 2944 aa6.29□□□□□ -1.4
CCDC88A-201ENST00000263630 KRTAP3-1Q9BYR8 98 aa6.29□□□□□ -1.4
CCDC88A-201ENST00000263630 MXRA5Q9NR99 2828 aa6.29□□□□□ -1.4
CCDC88A-201ENST00000263630 KRTAP10-6P60371 365 aaPredicted RBP6.28□□□□□ -1.4
CCDC88A-201ENST00000263630 NBPF19A0A087WUL8 3843 aa6.27□□□□□ -1.41
CCDC88A-201ENST00000263630 KRTAP12-3P60328 96 aa6.25□□□□□ -1.41
CCDC88A-201ENST00000263630 MEGF8Q7Z7M0 2845 aa6.23□□□□□ -1.41
CCDC88A-201ENST00000263630 SZT2Q5T011 3432 aa6.2□□□□□ -1.42
CCDC88A-201ENST00000263630 EYSQ5T1H1 3165 aa6.16□□□□□ -1.42
CCDC88A-201ENST00000263630 HRNRQ86YZ3 2850 aaPredicted RBP6.14□□□□□ -1.43
CCDC88A-201ENST00000263630 KRTAP10-5P60370 271 aa6.14□□□□□ -1.43
CCDC88A-201ENST00000263630 LOC400499M0QZD8 3231 aa6.1□□□□□ -1.43
CCDC88A-201ENST00000263630 ASPMQ8IZT6 3477 aa6.07□□□□□ -1.44
CCDC88A-201ENST00000263630 WDFY3Q8IZQ1 3526 aa6.06□□□□□ -1.44
CCDC88A-201ENST00000263630 SPTBN5Q9NRC6 3674 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-201ENST00000263630 LCE3AQ5TA76 89 aa6□□□□□ -1.45
CCDC88A-201ENST00000263630 ZFHX3Q15911 3703 aa5.98□□□□□ -1.45
CCDC88A-201ENST00000263630 FBN3Q75N90 2809 aa5.97□□□□□ -1.45
CCDC88A-201ENST00000263630 MYO15AQ9UKN7 3530 aa5.96□□□□□ -1.45
CCDC88A-201ENST00000263630 KRTAP3-2Q9BYR7 98 aa5.93□□□□□ -1.46
CCDC88A-201ENST00000263630 KRTAP8-1Q8IUC2 63 aa5.91□□□□□ -1.46
CCDC88A-201ENST00000263630 SPENQ96T58 3664 aaKnown RBP5.9□□□□□ -1.46
CCDC88A-201ENST00000263630 KRTAP3-3Q9BYR6 98 aa5.89□□□□□ -1.47
CCDC88A-201ENST00000263630 DCHS1Q96JQ0 3298 aa5.89□□□□□ -1.47
CCDC88A-201ENST00000263630 LAMA5O15230 3695 aa5.87□□□□□ -1.47
CCDC88A-201ENST00000263630 OTOGQ6ZRI0 2925 aa5.83□□□□□ -1.48
CCDC88A-201ENST00000263630 CSMD1Q96PZ7 3565 aa5.75□□□□□ -1.49
CCDC88A-201ENST00000263630 SMG1Q96Q15 3661 aaKnown RBP5.74□□□□□ -1.49
CCDC88A-201ENST00000263630 RELNP78509 3460 aa5.73□□□□□ -1.49
CCDC88A-201ENST00000263630 MT1HL1P0DM35 61 aa5.67□□□□□ -1.5
CCDC88A-201ENST00000263630 KRTAP10-7P60409 375 aaPredicted RBP5.65□□□□□ -1.51
CCDC88A-201ENST00000263630 DMDP11532 3685 aa5.65□□□□□ -1.51
CCDC88A-201ENST00000263630 LORP23490 312 aaPredicted RBP5.64□□□□□ -1.51
CCDC88A-201ENST00000263630 FBN1P35555 2871 aaKnown RBP5.63□□□□□ -1.51
CCDC88A-201ENST00000263630 TRRAPQ9Y4A5 3859 aa5.57□□□□□ -1.52
CCDC88A-201ENST00000263630 ALMS1Q8TCU4 4167 aa5.5□□□□□ -1.53
CCDC88A-201ENST00000263630 MUC3AQ02505 3323 aa5.5□□□□□ -1.53
CCDC88A-201ENST00000263630 KRTAP19-4Q3LI73 84 aa5.49□□□□□ -1.53
CCDC88A-201ENST00000263630 VPS13CQ709C8 3753 aa5.45□□□□□ -1.54
CCDC88A-201ENST00000263630 AKAP9Q99996 3911 aa5.44□□□□□ -1.54
CCDC88A-201ENST00000263630 CSMD3Q7Z407 3707 aa5.44□□□□□ -1.54
CCDC88A-201ENST00000263630 LCE3CQ5T5A8 94 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms