RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 LRBAP50851 2863 aa10.36□□□□□ -0.75
PTPRE-201ENST00000254667 ADGRG4Q8IZF6 3080 aa10.33□□□□□ -0.76
PTPRE-201ENST00000254667 KRTAP1-4P0C5Y4 121 aa10.32□□□□□ -0.76
PTPRE-201ENST00000254667 A6NN06 94 aa10.31□□□□□ -0.76
PTPRE-201ENST00000254667 LAMA1P25391 3075 aa10.31□□□□□ -0.76
PTPRE-201ENST00000254667 DMXL2Q8TDJ6 3036 aa10.29□□□□□ -0.76
PTPRE-201ENST00000254667 CELSR3Q9NYQ7 3312 aa10.29□□□□□ -0.76
PTPRE-201ENST00000254667 KRTAP25-1Q3LHN0 102 aa10.27□□□□□ -0.77
PTPRE-201ENST00000254667 H3BS24 57 aa10.24□□□□□ -0.77
PTPRE-201ENST00000254667 EYSQ5T1H1 3165 aa10.23□□□□□ -0.77
PTPRE-201ENST00000254667 REV3LO60673 3130 aa10.23□□□□□ -0.77
PTPRE-201ENST00000254667 VCANP13611 3396 aa10.22□□□□□ -0.77
PTPRE-201ENST00000254667 ZZEF1O43149 2961 aa10.21□□□□□ -0.77
PTPRE-201ENST00000254667 BOD1L1Q8NFC6 3051 aa10.21□□□□□ -0.78
PTPRE-201ENST00000254667 XP32Q5T750 250 aa10.2□□□□□ -0.78
PTPRE-201ENST00000254667 TNRC18O15417 2968 aaPredicted RBP10.19□□□□□ -0.78
PTPRE-201ENST00000254667 NBEAQ8NFP9 2946 aa10.18□□□□□ -0.78
PTPRE-201ENST00000254667 ASH1LQ9NR48 2969 aaKnown RBP10.17□□□□□ -0.78
PTPRE-201ENST00000254667 CELSR2Q9HCU4 2923 aa10.16□□□□□ -0.78
PTPRE-201ENST00000254667 FREM2Q5SZK8 3169 aa10.16□□□□□ -0.78
PTPRE-201ENST00000254667 TNP1P09430 55 aa10.14□□□□□ -0.79
PTPRE-201ENST00000254667 CRYBG3Q68DQ2 2970 aa10.1□□□□□ -0.79
PTPRE-201ENST00000254667 TPRXLQ17RH7 258 aa10.1□□□□□ -0.79
PTPRE-201ENST00000254667 DCHS2Q6V1P9 2916 aa10.08□□□□□ -0.8
PTPRE-201ENST00000254667 COL6A3P12111 3177 aa10.08□□□□□ -0.8
PTPRE-201ENST00000254667 ZANQ9Y493 2812 aa10.07□□□□□ -0.8
PTPRE-201ENST00000254667 KRTAP16-1A8MUX0 517 aa9.99□□□□□ -0.81
PTPRE-201ENST00000254667 HRNRQ86YZ3 2850 aaPredicted RBP9.99□□□□□ -0.81
PTPRE-201ENST00000254667 USP34Q70CQ2 3546 aa9.95□□□□□ -0.82
PTPRE-201ENST00000254667 PP632Q6XCG6 107 aa9.91□□□□□ -0.82
PTPRE-201ENST00000254667 KRTAP13-3Q3SY46 172 aa9.9□□□□□ -0.82
PTPRE-201ENST00000254667 NF1P21359 2839 aa9.86□□□□□ -0.83
PTPRE-201ENST00000254667 DMXL1Q9Y485 3027 aa9.85□□□□□ -0.83
PTPRE-201ENST00000254667 CFAP47Q6ZTR5 3102 aa9.85□□□□□ -0.83
PTPRE-201ENST00000254667 A0A1B0GVY2 172 aa9.82□□□□□ -0.84
PTPRE-201ENST00000254667 KRTAP10-8P60410 259 aa9.81□□□□□ -0.84
PTPRE-201ENST00000254667 TENM3Q9P273 2699 aa9.79□□□□□ -0.84
PTPRE-201ENST00000254667 SPEGQ15772 3267 aa9.79□□□□□ -0.84
PTPRE-201ENST00000254667 TENM1Q9UKZ4 2725 aa9.78□□□□□ -0.84
PTPRE-201ENST00000254667 H0YAA0 97 aa9.76□□□□□ -0.85
PTPRE-201ENST00000254667 FBN2P35556 2912 aa9.76□□□□□ -0.85
PTPRE-201ENST00000254667 NDUFAF8A1L188 74 aa9.73□□□□□ -0.85
PTPRE-201ENST00000254667 C10orf95Q9H7T3 257 aa9.73□□□□□ -0.85
PTPRE-201ENST00000254667 TENM2Q9NT68 2774 aa9.72□□□□□ -0.85
PTPRE-201ENST00000254667 KRTAP10-10P60014 251 aa9.69□□□□□ -0.86
PTPRE-201ENST00000254667 MYO15AQ9UKN7 3530 aa9.67□□□□□ -0.86
PTPRE-201ENST00000254667 MXRA5Q9NR99 2828 aa9.67□□□□□ -0.86
PTPRE-201ENST00000254667 PRO2289Q9P1D8 64 aa9.63□□□□□ -0.87
PTPRE-201ENST00000254667 P0C880 135 aa9.59□□□□□ -0.87
PTPRE-201ENST00000254667 CELSR1Q9NYQ6 3014 aa9.57□□□□□ -0.88
PTPRE-201ENST00000254667 LOC400499M0QZD8 3231 aa9.53□□□□□ -0.88
PTPRE-201ENST00000254667 WDFY3Q8IZQ1 3526 aa9.5□□□□□ -0.89
PTPRE-201ENST00000254667 TGP01266 2768 aa9.46□□□□□ -0.89
PTPRE-201ENST00000254667 PDZD2O15018 2839 aa9.41□□□□□ -0.9
PTPRE-201ENST00000254667 PKD1L1Q8TDX9 2849 aa9.34□□□□□ -0.91
PTPRE-201ENST00000254667 DMDP11532 3685 aa9.33□□□□□ -0.92
PTPRE-201ENST00000254667 KRTAP12-2P59991 146 aa9.19□□□□□ -0.94
PTPRE-201ENST00000254667 VWFP04275 2813 aa9.17□□□□□ -0.94
PTPRE-201ENST00000254667 ZFHX4Q86UP3 3567 aa9.16□□□□□ -0.94
PTPRE-201ENST00000254667 ASPMQ8IZT6 3477 aa9.16□□□□□ -0.94
PTPRE-201ENST00000254667 DCHS1Q96JQ0 3298 aa9.15□□□□□ -0.94
PTPRE-201ENST00000254667 KRTAP13-4Q3LI77 160 aa9.14□□□□□ -0.95
PTPRE-201ENST00000254667 KRTAP3-1Q9BYR8 98 aa9.14□□□□□ -0.95
PTPRE-201ENST00000254667 OTOGQ6ZRI0 2925 aa9.14□□□□□ -0.95
PTPRE-201ENST00000254667 RELNP78509 3460 aa9.13□□□□□ -0.95
PTPRE-201ENST00000254667 LAMA5O15230 3695 aa9.09□□□□□ -0.95
PTPRE-201ENST00000254667 KRTAP12-1P59990 96 aa9.09□□□□□ -0.95
PTPRE-201ENST00000254667 SMG1Q96Q15 3661 aaKnown RBP9.03□□□□□ -0.96
PTPRE-201ENST00000254667 BSNQ9UPA5 3926 aa9.02□□□□□ -0.97
PTPRE-201ENST00000254667 MUC3AQ02505 3323 aa8.97□□□□□ -0.97
PTPRE-201ENST00000254667 FBN1P35555 2871 aaKnown RBP8.97□□□□□ -0.97
PTPRE-201ENST00000254667 ANK3Q12955 4377 aaKnown RBP8.94□□□□□ -0.98
PTPRE-201ENST00000254667 NBPF19A0A087WUL8 3843 aa8.93□□□□□ -0.98
PTPRE-201ENST00000254667 MT1HL1P0DM35 61 aa8.92□□□□□ -0.98
PTPRE-201ENST00000254667 KRTAP10-6P60371 365 aaPredicted RBP8.88□□□□□ -0.99
PTPRE-201ENST00000254667 CSMD1Q96PZ7 3565 aa8.87□□□□□ -0.99
PTPRE-201ENST00000254667 FBN3Q75N90 2809 aa8.79□□□□□ -1
PTPRE-201ENST00000254667 SPENQ96T58 3664 aaKnown RBP8.78□□□□□ -1
PTPRE-201ENST00000254667 KRTAP10-4P60372 401 aaPredicted RBP8.72□□□□□ -1.01
PTPRE-201ENST00000254667 SRRM2Q9UQ35 2752 aaKnown RBP8.71□□□□□ -1.01
PTPRE-201ENST00000254667 ZFHX3Q15911 3703 aa8.7□□□□□ -1.02
PTPRE-201ENST00000254667 KRTAP15-1Q3LI76 137 aa8.67□□□□□ -1.02
PTPRE-201ENST00000254667 MEGF8Q7Z7M0 2845 aa8.67□□□□□ -1.02
PTPRE-201ENST00000254667 SVEP1Q4LDE5 3571 aa8.62□□□□□ -1.03
PTPRE-201ENST00000254667 KRTAP3-3Q9BYR6 98 aa8.58□□□□□ -1.04
PTPRE-201ENST00000254667 KRTAP3-2Q9BYR7 98 aa8.57□□□□□ -1.04
PTPRE-201ENST00000254667 KRTAP4-5Q9BYR2 181 aa8.51□□□□□ -1.05
PTPRE-201ENST00000254667 COL7A1Q02388 2944 aa8.5□□□□□ -1.05
PTPRE-201ENST00000254667 HUWE1Q7Z6Z7 4374 aaKnown RBP8.45□□□□□ -1.06
PTPRE-201ENST00000254667 TRRAPQ9Y4A5 3859 aa8.45□□□□□ -1.06
PTPRE-201ENST00000254667 KRTAP10-12P60413 245 aa8.41□□□□□ -1.06
PTPRE-201ENST00000254667 CSMD2Q7Z408 3487 aa8.38□□□□□ -1.07
PTPRE-201ENST00000254667 ALMS1Q8TCU4 4167 aa8.37□□□□□ -1.07
PTPRE-201ENST00000254667 AKAP9Q99996 3911 aa8.31□□□□□ -1.08
PTPRE-201ENST00000254667 VPS13CQ709C8 3753 aa8.26□□□□□ -1.09
PTPRE-201ENST00000254667 KRTAP23-1A1A580 65 aa8.25□□□□□ -1.09
PTPRE-201ENST00000254667 KRTAP12-3P60328 96 aa8.16□□□□□ -1.1
PTPRE-201ENST00000254667 CUBNO60494 3623 aa8.14□□□□□ -1.11
PTPRE-201ENST00000254667 INE1O15225 51 aa8.11□□□□□ -1.11
PTPRE-201ENST00000254667 ZNF469Q96JG9 3925 aaPredicted RBP8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms