RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 KRTAP10-10P60014 251 aa6.58□□□□□ -1.36
USP40-201ENST00000251722 FRYQ5TBA9 3013 aa6.57□□□□□ -1.36
USP40-201ENST00000251722 XIRP2A4UGR9 3374 aa6.57□□□□□ -1.36
USP40-201ENST00000251722 FLNCQ14315 2725 aa6.56□□□□□ -1.36
USP40-201ENST00000251722 KRTAP15-1Q3LI76 137 aa6.56□□□□□ -1.36
USP40-201ENST00000251722 VPS13AQ96RL7 3174 aa6.55□□□□□ -1.36
USP40-201ENST00000251722 APCP25054 2843 aa6.55□□□□□ -1.36
USP40-201ENST00000251722 TENM4Q6N022 2769 aa6.54□□□□□ -1.36
USP40-201ENST00000251722 INE1O15225 51 aa6.54□□□□□ -1.36
USP40-201ENST00000251722 UTP20O75691 2785 aaKnown RBP6.54□□□□□ -1.36
USP40-201ENST00000251722 NIPBLQ6KC79 2804 aaeCLIP6.53□□□□□ -1.36
USP40-201ENST00000251722 CDH23Q9H251 3354 aa6.53□□□□□ -1.36
USP40-201ENST00000251722 ATMQ13315 3056 aa6.45□□□□□ -1.38
USP40-201ENST00000251722 TACC2O95359 2948 aa6.41□□□□□ -1.38
USP40-201ENST00000251722 COL12A1Q99715 3063 aa6.4□□□□□ -1.38
USP40-201ENST00000251722 KALRNO60229 2985 aa6.4□□□□□ -1.39
USP40-201ENST00000251722 SZT2Q5T011 3432 aa6.39□□□□□ -1.39
USP40-201ENST00000251722 CELSR3Q9NYQ7 3312 aa6.39□□□□□ -1.39
USP40-201ENST00000251722 LAMA1P25391 3075 aa6.37□□□□□ -1.39
USP40-201ENST00000251722 LRBAP50851 2863 aa6.37□□□□□ -1.39
USP40-201ENST00000251722 FRYLO94915 3013 aa6.36□□□□□ -1.39
USP40-201ENST00000251722 ADGRG4Q8IZF6 3080 aa6.31□□□□□ -1.4
USP40-201ENST00000251722 DMXL2Q8TDJ6 3036 aa6.31□□□□□ -1.4
USP40-201ENST00000251722 EYSQ5T1H1 3165 aa6.3□□□□□ -1.4
USP40-201ENST00000251722 VCANP13611 3396 aa6.3□□□□□ -1.4
USP40-201ENST00000251722 BOD1L1Q8NFC6 3051 aa6.28□□□□□ -1.4
USP40-201ENST00000251722 COL6A3P12111 3177 aa6.27□□□□□ -1.41
USP40-201ENST00000251722 TNRC18O15417 2968 aaPredicted RBP6.26□□□□□ -1.41
USP40-201ENST00000251722 FREM2Q5SZK8 3169 aa6.25□□□□□ -1.41
USP40-201ENST00000251722 REV3LO60673 3130 aa6.25□□□□□ -1.41
USP40-201ENST00000251722 KRTAP12-2P59991 146 aa6.24□□□□□ -1.41
USP40-201ENST00000251722 CRYBG3Q68DQ2 2970 aa6.23□□□□□ -1.41
USP40-201ENST00000251722 DNAH14Q0VDD8 3507 aa6.23□□□□□ -1.41
USP40-201ENST00000251722 ZZEF1O43149 2961 aa6.21□□□□□ -1.41
USP40-201ENST00000251722 KRTAP23-1A1A580 65 aa6.21□□□□□ -1.42
USP40-201ENST00000251722 NBEAQ8NFP9 2946 aa6.2□□□□□ -1.42
USP40-201ENST00000251722 KRTAP13-4Q3LI77 160 aa6.2□□□□□ -1.42
USP40-201ENST00000251722 ASH1LQ9NR48 2969 aaKnown RBP6.2□□□□□ -1.42
USP40-201ENST00000251722 CELSR2Q9HCU4 2923 aa6.17□□□□□ -1.42
USP40-201ENST00000251722 KRTAP12-1P59990 96 aa6.16□□□□□ -1.42
USP40-201ENST00000251722 TENM2Q9NT68 2774 aa6.13□□□□□ -1.43
USP40-201ENST00000251722 DCHS2Q6V1P9 2916 aa6.13□□□□□ -1.43
USP40-201ENST00000251722 HRNRQ86YZ3 2850 aaPredicted RBP6.12□□□□□ -1.43
USP40-201ENST00000251722 ZANQ9Y493 2812 aa6.12□□□□□ -1.43
USP40-201ENST00000251722 CFAP47Q6ZTR5 3102 aa6.1□□□□□ -1.43
USP40-201ENST00000251722 USP34Q70CQ2 3546 aa6.09□□□□□ -1.43
USP40-201ENST00000251722 SPTBN5Q9NRC6 3674 aaKnown RBP6.09□□□□□ -1.44
USP40-201ENST00000251722 TENM1Q9UKZ4 2725 aa6.08□□□□□ -1.44
USP40-201ENST00000251722 DMXL1Q9Y485 3027 aa6.07□□□□□ -1.44
USP40-201ENST00000251722 TENM3Q9P273 2699 aa6.04□□□□□ -1.44
USP40-201ENST00000251722 NF1P21359 2839 aa6.04□□□□□ -1.44
USP40-201ENST00000251722 MXRA5Q9NR99 2828 aa6.02□□□□□ -1.45
USP40-201ENST00000251722 MT1HL1P0DM35 61 aa6.01□□□□□ -1.45
USP40-201ENST00000251722 PDZD2O15018 2839 aa6□□□□□ -1.45
USP40-201ENST00000251722 KRTAP3-1Q9BYR8 98 aa5.96□□□□□ -1.46
USP40-201ENST00000251722 SPEGQ15772 3267 aa5.96□□□□□ -1.46
USP40-201ENST00000251722 FBN2P35556 2912 aa5.95□□□□□ -1.46
USP40-201ENST00000251722 KRTAP10-6P60371 365 aaPredicted RBP5.91□□□□□ -1.46
USP40-201ENST00000251722 LOC400499M0QZD8 3231 aa5.87□□□□□ -1.47
USP40-201ENST00000251722 TGP01266 2768 aa5.85□□□□□ -1.47
USP40-201ENST00000251722 KRTAP10-4P60372 401 aaPredicted RBP5.85□□□□□ -1.47
USP40-201ENST00000251722 CELSR1Q9NYQ6 3014 aa5.85□□□□□ -1.47
USP40-201ENST00000251722 ALMS1Q8TCU4 4167 aa5.78□□□□□ -1.48
USP40-201ENST00000251722 ANK3Q12955 4377 aaKnown RBP5.76□□□□□ -1.49
USP40-201ENST00000251722 OTOGQ6ZRI0 2925 aa5.72□□□□□ -1.49
USP40-201ENST00000251722 HUWE1Q7Z6Z7 4374 aaKnown RBP5.71□□□□□ -1.5
USP40-201ENST00000251722 KRTAP10-12P60413 245 aa5.68□□□□□ -1.5
USP40-201ENST00000251722 PKD1L1Q8TDX9 2849 aa5.68□□□□□ -1.5
USP40-201ENST00000251722 RELNP78509 3460 aa5.67□□□□□ -1.5
USP40-201ENST00000251722 MYO15AQ9UKN7 3530 aa5.66□□□□□ -1.5
USP40-201ENST00000251722 KRTAP3-2Q9BYR7 98 aa5.65□□□□□ -1.51
USP40-201ENST00000251722 WDFY3Q8IZQ1 3526 aa5.64□□□□□ -1.51
USP40-201ENST00000251722 KRTAP4-5Q9BYR2 181 aa5.63□□□□□ -1.51
USP40-201ENST00000251722 KRTAP3-3Q9BYR6 98 aa5.61□□□□□ -1.51
USP40-201ENST00000251722 DCHS1Q96JQ0 3298 aa5.61□□□□□ -1.51
USP40-201ENST00000251722 VWFP04275 2813 aa5.6□□□□□ -1.51
USP40-201ENST00000251722 NBPF19A0A087WUL8 3843 aa5.56□□□□□ -1.52
USP40-201ENST00000251722 ASPMQ8IZT6 3477 aa5.53□□□□□ -1.52
USP40-201ENST00000251722 FBN1P35555 2871 aaKnown RBP5.49□□□□□ -1.53
USP40-201ENST00000251722 KRTAP12-3P60328 96 aa5.47□□□□□ -1.53
USP40-201ENST00000251722 LAMA5O15230 3695 aa5.44□□□□□ -1.54
USP40-201ENST00000251722 FBN3Q75N90 2809 aa5.44□□□□□ -1.54
USP40-201ENST00000251722 ZFHX4Q86UP3 3567 aa5.43□□□□□ -1.54
USP40-201ENST00000251722 MUC3AQ02505 3323 aa5.41□□□□□ -1.54
USP40-201ENST00000251722 DMDP11532 3685 aa5.4□□□□□ -1.54
USP40-201ENST00000251722 ZFHX3Q15911 3703 aa5.4□□□□□ -1.55
USP40-201ENST00000251722 MEGF8Q7Z7M0 2845 aa5.38□□□□□ -1.55
USP40-201ENST00000251722 DNAH1Q9P2D7 4330 aa5.35□□□□□ -1.55
USP40-201ENST00000251722 KRTAP8-1Q8IUC2 63 aa5.34□□□□□ -1.55
USP40-201ENST00000251722 DNAH2Q9P225 4427 aa5.33□□□□□ -1.56
USP40-201ENST00000251722 DNAH10Q8IVF4 4471 aa5.32□□□□□ -1.56
USP40-201ENST00000251722 CSMD1Q96PZ7 3565 aa5.32□□□□□ -1.56
USP40-201ENST00000251722 LCE3AQ5TA76 89 aa5.3□□□□□ -1.56
USP40-201ENST00000251722 DNAH11Q96DT5 4516 aa5.26□□□□□ -1.57
USP40-201ENST00000251722 MT1HP80294 61 aa5.26□□□□□ -1.57
USP40-201ENST00000251722 SRRM2Q9UQ35 2752 aaKnown RBP5.26□□□□□ -1.57
USP40-201ENST00000251722 KRTAP19-4Q3LI73 84 aa5.25□□□□□ -1.57
USP40-201ENST00000251722 SMG1Q96Q15 3661 aaKnown RBP5.25□□□□□ -1.57
USP40-201ENST00000251722 CRCT1Q9UGL9 99 aa5.24□□□□□ -1.57
USP40-201ENST00000251722 DNAH9Q9NYC9 4486 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms