RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 WFDC10BQ8IUB3 73 aa1.42□□□□□ -2.18
VPS13C-208ENST00000559119 WFDC13Q8IUB5 93 aa1.42□□□□□ -2.18
VPS13C-208ENST00000559119 LINC00472Q9H8W2 130 aa1.42□□□□□ -2.18
VPS13C-208ENST00000559119 ZZEF1O43149 2961 aa1.42□□□□□ -2.18
VPS13C-208ENST00000559119 SPTBN2O15020 2390 aa1.42□□□□□ -2.18
VPS13C-208ENST00000559119 NBEAQ8NFP9 2946 aa1.42□□□□□ -2.18
VPS13C-208ENST00000559119 PTPRZ1P23471 2315 aaPredicted RBP1.41□□□□□ -2.18
VPS13C-208ENST00000559119 CACNA1BQ00975 2339 aa1.41□□□□□ -2.18
VPS13C-208ENST00000559119 IGLV10-54A0A075B6I4 117 aa1.41□□□□□ -2.18
VPS13C-208ENST00000559119 MMP24-AS1A0A0U1RRL7 71 aa1.41□□□□□ -2.18
VPS13C-208ENST00000559119 MSMBP08118 114 aa1.41□□□□□ -2.18
VPS13C-208ENST00000559119 SPRR1BP22528 89 aa1.41□□□□□ -2.18
VPS13C-208ENST00000559119 ROMO1P60602 79 aa1.41□□□□□ -2.18
VPS13C-208ENST00000559119 MIR22HGQ0VDD5 57 aa1.41□□□□□ -2.18
VPS13C-208ENST00000559119 C1orf134Q5TEV5 83 aa1.41□□□□□ -2.18
VPS13C-208ENST00000559119 CSAG1Q6PB30 78 aa1.41□□□□□ -2.18
VPS13C-208ENST00000559119 C10orf99Q6UWK7 81 aa1.41□□□□□ -2.18
VPS13C-208ENST00000559119 DEFB105AQ8NG35 78 aa1.41□□□□□ -2.18
VPS13C-208ENST00000559119 PIEZO1Q92508 2521 aa1.41□□□□□ -2.18
VPS13C-208ENST00000559119 MUC3AQ02505 3323 aa1.41□□□□□ -2.18
VPS13C-208ENST00000559119 XIRP2A4UGR9 3374 aa1.41□□□□□ -2.18
VPS13C-208ENST00000559119 VCANP13611 3396 aa1.41□□□□□ -2.18
VPS13C-208ENST00000559119 ACACAQ13085 2346 aa1.4□□□□□ -2.18
VPS13C-208ENST00000559119 A0A087WSZ3 146 aa1.4□□□□□ -2.19
VPS13C-208ENST00000559119 A0A1B0GU69 56 aa1.4□□□□□ -2.19
VPS13C-208ENST00000559119 KRTAP25-1Q3LHN0 102 aa1.4□□□□□ -2.19
VPS13C-208ENST00000559119 KRTAP26-1Q6PEX3 210 aa1.4□□□□□ -2.19
VPS13C-208ENST00000559119 APC2O95996 2303 aa1.4□□□□□ -2.19
VPS13C-208ENST00000559119 CR1P17927 2039 aa1.39□□□□□ -2.19
VPS13C-208ENST00000559119 RPL37AP61513 92 aaKnown RBP1.39□□□□□ -2.19
VPS13C-208ENST00000559119 PCOTHQ58A44 107 aa1.39□□□□□ -2.19
VPS13C-208ENST00000559119 DMAC1Q96GE9 116 aa1.39□□□□□ -2.19
VPS13C-208ENST00000559119 BDP1A6H8Y1 2624 aa1.39□□□□□ -2.19
VPS13C-208ENST00000559119 MED13LQ71F56 2210 aa1.39□□□□□ -2.19
VPS13C-208ENST00000559119 SORL1Q92673 2214 aa1.39□□□□□ -2.19
VPS13C-208ENST00000559119 EYSQ5T1H1 3165 aa1.39□□□□□ -2.19
VPS13C-208ENST00000559119 TPRP12270 2363 aaKnown RBP1.39□□□□□ -2.19
VPS13C-208ENST00000559119 SPTBN1Q01082 2364 aaKnown RBP1.39□□□□□ -2.19
VPS13C-208ENST00000559119 FRYQ5TBA9 3013 aa1.38□□□□□ -2.19
VPS13C-208ENST00000559119 C5orf42Q9H799 3197 aa1.38□□□□□ -2.19
VPS13C-208ENST00000559119 H3BNG1 76 aa1.38□□□□□ -2.19
VPS13C-208ENST00000559119 DEFB130BP0DP73 79 aa1.38□□□□□ -2.19
VPS13C-208ENST00000559119 DEFB130AP0DP74 79 aa1.38□□□□□ -2.19
VPS13C-208ENST00000559119 DEFB136Q30KP8 78 aa1.38□□□□□ -2.19
VPS13C-208ENST00000559119 CFAP54Q96N23 3096 aa1.37□□□□□ -2.19
VPS13C-208ENST00000559119 IGF2RP11717 2491 aa1.37□□□□□ -2.19
VPS13C-208ENST00000559119 MAP1BP46821 2468 aaKnown RBP1.37□□□□□ -2.19
VPS13C-208ENST00000559119 A0A096LPF7 62 aa1.37□□□□□ -2.19
VPS13C-208ENST00000559119 DEFB124Q8NES8 71 aa1.37□□□□□ -2.19
VPS13C-208ENST00000559119 MRPL34Q9BQ48 92 aaKnown RBP1.37□□□□□ -2.19
VPS13C-208ENST00000559119 WNK1Q9H4A3 2382 aa1.37□□□□□ -2.19
VPS13C-208ENST00000559119 CACNA1AO00555 2505 aa1.37□□□□□ -2.19
VPS13C-208ENST00000559119 NCOR2Q9Y618 2525 aa1.37□□□□□ -2.19
VPS13C-208ENST00000559119 PKDREJQ9NTG1 2253 aa1.37□□□□□ -2.19
VPS13C-208ENST00000559119 MYO15AQ9UKN7 3530 aa1.37□□□□□ -2.19
VPS13C-208ENST00000559119 REV3LO60673 3130 aa1.37□□□□□ -2.19
VPS13C-208ENST00000559119 VPS13AQ96RL7 3174 aa1.37□□□□□ -2.19
VPS13C-208ENST00000559119 PRUNE2Q8WUY3 3088 aa1.36□□□□□ -2.19
VPS13C-208ENST00000559119 SPTBN4Q9H254 2564 aa1.36□□□□□ -2.19
VPS13C-208ENST00000559119 TRIOO75962 3097 aa1.36□□□□□ -2.19
VPS13C-208ENST00000559119 ROS1P08922 2347 aa1.36□□□□□ -2.19
VPS13C-208ENST00000559119 Q96NJ1 140 aa1.36□□□□□ -2.19
VPS13C-208ENST00000559119 R4GN34 69 aa1.36□□□□□ -2.19
VPS13C-208ENST00000559119 FRYLO94915 3013 aa1.36□□□□□ -2.19
VPS13C-208ENST00000559119 SPTA1P02549 2419 aa1.36□□□□□ -2.19
VPS13C-208ENST00000559119 COL6A6A6NMZ7 2263 aa1.36□□□□□ -2.19
VPS13C-208ENST00000559119 ACACBO00763 2458 aa1.35□□□□□ -2.19
VPS13C-208ENST00000559119 LAMA2P24043 3122 aaKnown RBP1.35□□□□□ -2.19
VPS13C-208ENST00000559119 KALRNO60229 2985 aa1.35□□□□□ -2.19
VPS13C-208ENST00000559119 CFAP47Q6ZTR5 3102 aa1.35□□□□□ -2.19
VPS13C-208ENST00000559119 SPART-AS1P0CW21 52 aa1.35□□□□□ -2.19
VPS13C-208ENST00000559119 LINC01556Q5JQF7 62 aa1.35□□□□□ -2.19
VPS13C-208ENST00000559119 CCL19Q99731 98 aa1.35□□□□□ -2.19
VPS13C-208ENST00000559119 LAMA1P25391 3075 aa1.35□□□□□ -2.19
VPS13C-208ENST00000559119 ALMS1Q8TCU4 4167 aa1.35□□□□□ -2.19
VPS13C-208ENST00000559119 DMDP11532 3685 aa1.35□□□□□ -2.19
VPS13C-208ENST00000559119 PCNX1Q96RV3 2341 aa1.34□□□□□ -2.19
VPS13C-208ENST00000559119 WDFY3Q8IZQ1 3526 aa1.34□□□□□ -2.19
VPS13C-208ENST00000559119 FAM208BQ5VWN6 2430 aa1.34□□□□□ -2.19
VPS13C-208ENST00000559119 MGAQ8IWI9 3026 aa1.34□□□□□ -2.19
VPS13C-208ENST00000559119 A0A1B0GU33 70 aa1.34□□□□□ -2.19
VPS13C-208ENST00000559119 NUPR2A6NF83 97 aa1.34□□□□□ -2.19
VPS13C-208ENST00000559119 LY6G6CO95867 125 aa1.34□□□□□ -2.19
VPS13C-208ENST00000559119 ZFHX2Q9C0A1 2572 aaPredicted RBP1.34□□□□□ -2.2
VPS13C-208ENST00000559119 NBASA2RRP1 2371 aa1.34□□□□□ -2.2
VPS13C-208ENST00000559119 HIVEP3Q5T1R4 2406 aa1.34□□□□□ -2.2
VPS13C-208ENST00000559119 PKD1L2Q7Z442 2459 aa1.33□□□□□ -2.2
VPS13C-208ENST00000559119 FREM2Q5SZK8 3169 aa1.33□□□□□ -2.2
VPS13C-208ENST00000559119 WDFY4Q6ZS81 3184 aa1.33□□□□□ -2.2
VPS13C-208ENST00000559119 DSPP15924 2871 aaKnown RBP1.33□□□□□ -2.2
VPS13C-208ENST00000559119 A0A0G2JQZ4 141 aa1.33□□□□□ -2.2
VPS13C-208ENST00000559119 KRTAP12-1P59990 96 aa1.33□□□□□ -2.2
VPS13C-208ENST00000559119 HMCN1Q96RW7 5635 aa1.33□□□□□ -2.2
VPS13C-208ENST00000559119 CHD8Q9HCK8 2581 aa1.33□□□□□ -2.2
VPS13C-208ENST00000559119 USP24Q9UPU5 2620 aa1.33□□□□□ -2.2
VPS13C-208ENST00000559119 ANKHD1Q8IWZ3 2542 aaKnown RBP1.32□□□□□ -2.2
VPS13C-208ENST00000559119 TLN1Q9Y490 2541 aaKnown RBP1.32□□□□□ -2.2
VPS13C-208ENST00000559119 C20orf166-AS1Q96NR2 134 aa1.32□□□□□ -2.2
VPS13C-208ENST00000559119 RP1L1Q8IWN7 2480 aaPredicted RBP1.32□□□□□ -2.2
VPS13C-208ENST00000559119 PIEZO2Q9H5I5 2752 aa1.32□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 114.8 ms