RNA–Protein interactions for RNA: ENST00000493795.5

BRCA1-221, Transcript of BRCA1, DNA repair associated, human

TSL 5 BASIC

Gene BRCA1, Length 5,732 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-221	ENST00000493795	LAMA2	P24043	3122 aa	Known RBP	4.63	□□□□□ -1.67
BRCA1-221	ENST00000493795	PKD1L2	Q7Z442	2459 aa		4.62	□□□□□ -1.67
BRCA1-221	ENST00000493795		A6NN06	94 aa		4.61	□□□□□ -1.67
BRCA1-221	ENST00000493795	KRTAP1-3	Q8IUG1	177 aa		4.61	□□□□□ -1.67
BRCA1-221	ENST00000493795	KRTAP1-1	Q07627	177 aa		4.6	□□□□□ -1.67
BRCA1-221	ENST00000493795	USP9X	Q93008	2570 aa	Predicted RBP	4.6	□□□□□ -1.67
BRCA1-221	ENST00000493795		A8MUU9	505 aa		4.6	□□□□□ -1.67
BRCA1-221	ENST00000493795	WDFY3	Q8IZQ1	3526 aa		4.59	□□□□□ -1.67
BRCA1-221	ENST00000493795	EYS	Q5T1H1	3165 aa		4.59	□□□□□ -1.67
BRCA1-221	ENST00000493795		A8MU10	97 aa		4.58	□□□□□ -1.68
BRCA1-221	ENST00000493795	C10orf95	Q9H7T3	257 aa		4.58	□□□□□ -1.68
BRCA1-221	ENST00000493795	KRTAP29-1	A8MX34	341 aa	Predicted RBP	4.58	□□□□□ -1.68
BRCA1-221	ENST00000493795	KRTAP10-1	P60331	282 aa		4.58	□□□□□ -1.68
BRCA1-221	ENST00000493795	PIEZO1	Q92508	2521 aa		4.57	□□□□□ -1.68
BRCA1-221	ENST00000493795	SPTBN5	Q9NRC6	3674 aa	Known RBP	4.56	□□□□□ -1.68
BRCA1-221	ENST00000493795	TNP1	P09430	55 aa		4.56	□□□□□ -1.68
BRCA1-221	ENST00000493795	MKI67	P46013	3256 aa	Known RBP	4.55	□□□□□ -1.68
BRCA1-221	ENST00000493795	DNAH12	Q6ZR08	3092 aa		4.55	□□□□□ -1.68
BRCA1-221	ENST00000493795	LCE6A	A0A183	80 aa		4.54	□□□□□ -1.68
BRCA1-221	ENST00000493795	CEP350	Q5VT06	3117 aa		4.53	□□□□□ -1.68
BRCA1-221	ENST00000493795	KRTAP10-2	P60368	255 aa		4.53	□□□□□ -1.68
BRCA1-221	ENST00000493795	KRTAP1-5	Q9BYS1	174 aa		4.53	□□□□□ -1.68
BRCA1-221	ENST00000493795	MUC3A	Q02505	3323 aa		4.52	□□□□□ -1.69
BRCA1-221	ENST00000493795	SETD2	Q9BYW2	2564 aa	Predicted RBP	4.52	□□□□□ -1.69
BRCA1-221	ENST00000493795	XIRP2	A4UGR9	3374 aa		4.51	□□□□□ -1.69
BRCA1-221	ENST00000493795	MYO15A	Q9UKN7	3530 aa		4.51	□□□□□ -1.69
BRCA1-221	ENST00000493795	CDH23	Q9H251	3354 aa		4.51	□□□□□ -1.69
BRCA1-221	ENST00000493795	CHD8	Q9HCK8	2581 aa		4.5	□□□□□ -1.69
BRCA1-221	ENST00000493795	RPS29	P62273	56 aa	Known RBP	4.5	□□□□□ -1.69
BRCA1-221	ENST00000493795	DMD	P11532	3685 aa		4.5	□□□□□ -1.69
BRCA1-221	ENST00000493795	UNC80	Q8N2C7	3258 aa		4.49	□□□□□ -1.69
BRCA1-221	ENST00000493795	ANKRD17	O75179	2603 aa	Known RBP	4.49	□□□□□ -1.69
BRCA1-221	ENST00000493795	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	4.48	□□□□□ -1.69
BRCA1-221	ENST00000493795		A0A087X002	238 aa		4.48	□□□□□ -1.69
BRCA1-221	ENST00000493795	NOTCH2NL	Q7Z3S9	236 aa		4.47	□□□□□ -1.69
BRCA1-221	ENST00000493795	BPTF	Q12830	3046 aa		4.46	□□□□□ -1.7
BRCA1-221	ENST00000493795	PP632	Q6XCG6	107 aa		4.46	□□□□□ -1.7
BRCA1-221	ENST00000493795	USP9Y	O00507	2555 aa	Predicted RBP	4.46	□□□□□ -1.7
BRCA1-221	ENST00000493795	PRUNE2	Q8WUY3	3088 aa		4.45	□□□□□ -1.7
BRCA1-221	ENST00000493795	MTOR	P42345	2549 aa		4.45	□□□□□ -1.7
BRCA1-221	ENST00000493795	KRTAP11-1	Q8IUC1	163 aa		4.44	□□□□□ -1.7
BRCA1-221	ENST00000493795	SZT2	Q5T011	3432 aa		4.43	□□□□□ -1.7
BRCA1-221	ENST00000493795	FLG2	Q5D862	2391 aa	Predicted RBP	4.42	□□□□□ -1.7
BRCA1-221	ENST00000493795	SPEN	Q96T58	3664 aa	Known RBP	4.41	□□□□□ -1.7
BRCA1-221	ENST00000493795	DNAH14	Q0VDD8	3507 aa		4.4	□□□□□ -1.71
BRCA1-221	ENST00000493795	WDR87	Q6ZQQ6	2873 aa		4.39	□□□□□ -1.71
BRCA1-221	ENST00000493795	VCAN	P13611	3396 aa		4.38	□□□□□ -1.71
BRCA1-221	ENST00000493795	ANKRD11	Q6UB99	2663 aa	Predicted RBP	4.37	□□□□□ -1.71
BRCA1-221	ENST00000493795	CEP295	Q9C0D2	2601 aa		4.36	□□□□□ -1.71
BRCA1-221	ENST00000493795	TNRC18	O15417	2968 aa	Predicted RBP	4.36	□□□□□ -1.71
BRCA1-221	ENST00000493795	POLQ	O75417	2590 aa		4.35	□□□□□ -1.71
BRCA1-221	ENST00000493795	KRTAP10-8	P60410	259 aa		4.35	□□□□□ -1.71
BRCA1-221	ENST00000493795		Q6ZRN7	208 aa	Predicted RBP	4.34	□□□□□ -1.72
BRCA1-221	ENST00000493795		P0C880	135 aa		4.32	□□□□□ -1.72
BRCA1-221	ENST00000493795	SPTBN4	Q9H254	2564 aa		4.32	□□□□□ -1.72
BRCA1-221	ENST00000493795	FASN	P49327	2511 aa	Known RBP	4.31	□□□□□ -1.72
BRCA1-221	ENST00000493795	KRTAP13-2	Q52LG2	175 aa		4.31	□□□□□ -1.72
BRCA1-221	ENST00000493795	SPEG	Q15772	3267 aa		4.28	□□□□□ -1.72
BRCA1-221	ENST00000493795	DMBT1	Q9UGM3	2413 aa	Predicted RBP	4.28	□□□□□ -1.72
BRCA1-221	ENST00000493795	CFAP54	Q96N23	3096 aa		4.27	□□□□□ -1.73
BRCA1-221	ENST00000493795	MGAM2	Q2M2H8	2515 aa		4.27	□□□□□ -1.73
BRCA1-221	ENST00000493795	KRTAP13-1	Q8IUC0	172 aa		4.25	□□□□□ -1.73
BRCA1-221	ENST00000493795	USP24	Q9UPU5	2620 aa		4.25	□□□□□ -1.73
BRCA1-221	ENST00000493795	PRO2289	Q9P1D8	64 aa		4.24	□□□□□ -1.73
BRCA1-221	ENST00000493795	KRTAP7-1	Q8IUC3	87 aa		4.22	□□□□□ -1.73
BRCA1-221	ENST00000493795	RANBP2	P49792	3224 aa	Known RBP	4.22	□□□□□ -1.73
BRCA1-221	ENST00000493795	ZFHX3	Q15911	3703 aa		4.21	□□□□□ -1.73
BRCA1-221	ENST00000493795	TRANK1	O15050	2925 aa		4.21	□□□□□ -1.73
BRCA1-221	ENST00000493795	ZFHX4	Q86UP3	3567 aa		4.21	□□□□□ -1.74
BRCA1-221	ENST00000493795		A0A1B0GVY2	172 aa		4.21	□□□□□ -1.74
BRCA1-221	ENST00000493795	CHD9	Q3L8U1	2897 aa		4.2	□□□□□ -1.74
BRCA1-221	ENST00000493795	CHD7	Q9P2D1	2997 aa		4.19	□□□□□ -1.74
BRCA1-221	ENST00000493795	ASPM	Q8IZT6	3477 aa		4.19	□□□□□ -1.74
BRCA1-221	ENST00000493795		H0YAA0	97 aa		4.19	□□□□□ -1.74
BRCA1-221	ENST00000493795	COL6A3	P12111	3177 aa		4.18	□□□□□ -1.74
BRCA1-221	ENST00000493795	C5orf42	Q9H799	3197 aa		4.18	□□□□□ -1.74
BRCA1-221	ENST00000493795	EPG5	Q9HCE0	2579 aa		4.17	□□□□□ -1.74
BRCA1-221	ENST00000493795	TRIO	O75962	3097 aa		4.16	□□□□□ -1.74
BRCA1-221	ENST00000493795	FRYL	O94915	3013 aa		4.16	□□□□□ -1.74
BRCA1-221	ENST00000493795	KRTAP10-10	P60014	251 aa		4.15	□□□□□ -1.74
BRCA1-221	ENST00000493795	XP32	Q5T750	250 aa		4.15	□□□□□ -1.75
BRCA1-221	ENST00000493795	BSN	Q9UPA5	3926 aa		4.14	□□□□□ -1.75
BRCA1-221	ENST00000493795	LAMA1	P25391	3075 aa		4.13	□□□□□ -1.75
BRCA1-221	ENST00000493795	WDFY4	Q6ZS81	3184 aa		4.1	□□□□□ -1.75
BRCA1-221	ENST00000493795	HECTD1	Q9ULT8	2610 aa		4.1	□□□□□ -1.75
BRCA1-221	ENST00000493795	PRRC2C	Q9Y520	2896 aa	Known RBP	4.1	□□□□□ -1.75
BRCA1-221	ENST00000493795	VPS13A	Q96RL7	3174 aa		4.1	□□□□□ -1.75
BRCA1-221	ENST00000493795	STAB1	Q9NY15	2570 aa		4.09	□□□□□ -1.75
BRCA1-221	ENST00000493795	NBEAL1	Q6ZS30	2694 aa		4.07	□□□□□ -1.76
BRCA1-221	ENST00000493795	STAB2	Q8WWQ8	2551 aa		4.06	□□□□□ -1.76
BRCA1-221	ENST00000493795	TPRXL	Q17RH7	258 aa		4.06	□□□□□ -1.76
BRCA1-221	ENST00000493795	CFAP47	Q6ZTR5	3102 aa		4.06	□□□□□ -1.76
BRCA1-221	ENST00000493795	FLNA	P21333	2647 aa	Known RBP	4.05	□□□□□ -1.76
BRCA1-221	ENST00000493795	ATR	Q13535	2644 aa		4.04	□□□□□ -1.76
BRCA1-221	ENST00000493795	FREM2	Q5SZK8	3169 aa		4.02	□□□□□ -1.77
BRCA1-221	ENST00000493795	KRTAP1-4	P0C5Y4	121 aa		4.01	□□□□□ -1.77
BRCA1-221	ENST00000493795	LAMA5	O15230	3695 aa		4.01	□□□□□ -1.77
BRCA1-221	ENST00000493795	KRTAP12-2	P59991	146 aa		4.01	□□□□□ -1.77
BRCA1-221	ENST00000493795	CELSR3	Q9NYQ7	3312 aa		4.01	□□□□□ -1.77
BRCA1-221	ENST00000493795	FLNB	O75369	2602 aa	Known RBP	4.01	□□□□□ -1.77

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