RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 Q8NDZ9 215 aa6.16□□□□□ -1.42
USP54-201ENST00000339859 ITPR2Q14571 2701 aa6.16□□□□□ -1.42
USP54-201ENST00000339859 USP34Q70CQ2 3546 aa6.16□□□□□ -1.42
USP54-201ENST00000339859 DMXL2Q8TDJ6 3036 aa6.16□□□□□ -1.42
USP54-201ENST00000339859 TEX15Q9BXT5 2789 aa6.15□□□□□ -1.42
USP54-201ENST00000339859 LINC00483Q53H64 154 aa6.15□□□□□ -1.42
USP54-201ENST00000339859 DMXL1Q9Y485 3027 aa6.15□□□□□ -1.43
USP54-201ENST00000339859 A6NED7 52 aa6.14□□□□□ -1.43
USP54-201ENST00000339859 VPS13AQ96RL7 3174 aa6.14□□□□□ -1.43
USP54-201ENST00000339859 A0A0U1RQV1 116 aa6.14□□□□□ -1.43
USP54-201ENST00000339859 SEC61BP60468 96 aaKnown RBP6.14□□□□□ -1.43
USP54-201ENST00000339859 VCANP13611 3396 aa6.14□□□□□ -1.43
USP54-201ENST00000339859 PANO1I0J062 215 aa6.13□□□□□ -1.43
USP54-201ENST00000339859 BRK1Q8WUW1 75 aa6.13□□□□□ -1.43
USP54-201ENST00000339859 FP248Q71RG6 208 aaPredicted RBP6.13□□□□□ -1.43
USP54-201ENST00000339859 IGLV8-61A0A075B6I0 122 aa6.13□□□□□ -1.43
USP54-201ENST00000339859 COL6A5A8TX70 2615 aa6.12□□□□□ -1.43
USP54-201ENST00000339859 UTP20O75691 2785 aaKnown RBP6.11□□□□□ -1.43
USP54-201ENST00000339859 SMIM26A0A096LP01 95 aa6.11□□□□□ -1.43
USP54-201ENST00000339859 Q8N1X5 172 aa6.11□□□□□ -1.43
USP54-201ENST00000339859 SETXQ7Z333 2677 aaKnown RBP6.11□□□□□ -1.43
USP54-201ENST00000339859 SVIPQ8NHG7 77 aa6.1□□□□□ -1.43
USP54-201ENST00000339859 HIVEP1P15822 2718 aa6.09□□□□□ -1.43
USP54-201ENST00000339859 A0A1B0GU69 56 aa6.09□□□□□ -1.43
USP54-201ENST00000339859 APCP25054 2843 aa6.08□□□□□ -1.44
USP54-201ENST00000339859 FRYLO94915 3013 aa6.08□□□□□ -1.44
USP54-201ENST00000339859 FLNCQ14315 2725 aa6.06□□□□□ -1.44
USP54-201ENST00000339859 M0R2T5 61 aa6.05□□□□□ -1.44
USP54-201ENST00000339859 ATMQ13315 3056 aa6.04□□□□□ -1.44
USP54-201ENST00000339859 LINC01600Q96MT4 127 aa6.04□□□□□ -1.44
USP54-201ENST00000339859 ZCCHC13Q8WW36 166 aaKnown RBP6.04□□□□□ -1.44
USP54-201ENST00000339859 CELSR3Q9NYQ7 3312 aa6.03□□□□□ -1.44
USP54-201ENST00000339859 KRTAP4-16G5E9R7 235 aaPredicted RBP6.03□□□□□ -1.44
USP54-201ENST00000339859 RPS29P62273 56 aaKnown RBP6.02□□□□□ -1.45
USP54-201ENST00000339859 COL12A1Q99715 3063 aa6□□□□□ -1.45
USP54-201ENST00000339859 C1orf195Q5TG92 126 aa6□□□□□ -1.45
USP54-201ENST00000339859 STAB1Q9NY15 2570 aa5.99□□□□□ -1.45
USP54-201ENST00000339859 A0A087X002 238 aa5.98□□□□□ -1.45
USP54-201ENST00000339859 BOD1L1Q8NFC6 3051 aa5.98□□□□□ -1.45
USP54-201ENST00000339859 COA5Q86WW8 74 aa5.97□□□□□ -1.45
USP54-201ENST00000339859 LINC00472Q9H8W2 130 aa5.97□□□□□ -1.45
USP54-201ENST00000339859 FREM2Q5SZK8 3169 aa5.97□□□□□ -1.45
USP54-201ENST00000339859 ITPR1Q14643 2758 aa5.96□□□□□ -1.45
USP54-201ENST00000339859 MMP24-AS1A0A0U1RRL7 71 aa5.96□□□□□ -1.45
USP54-201ENST00000339859 LRBAP50851 2863 aa5.96□□□□□ -1.45
USP54-201ENST00000339859 NSD1Q96L73 2696 aaPredicted RBP5.96□□□□□ -1.45
USP54-201ENST00000339859 A8MUN3 132 aa5.96□□□□□ -1.46
USP54-201ENST00000339859 PSPHP1O15172 72 aa5.96□□□□□ -1.46
USP54-201ENST00000339859 NBEAQ8NFP9 2946 aa5.95□□□□□ -1.46
USP54-201ENST00000339859 MYO15AQ9UKN7 3530 aa5.95□□□□□ -1.46
USP54-201ENST00000339859 MAP1AP78559 2803 aaPredicted RBP5.94□□□□□ -1.46
USP54-201ENST00000339859 KRTAP11-1Q8IUC1 163 aa5.94□□□□□ -1.46
USP54-201ENST00000339859 KRTAP7-1Q8IUC3 87 aa5.92□□□□□ -1.46
USP54-201ENST00000339859 TENM4Q6N022 2769 aa5.92□□□□□ -1.46
USP54-201ENST00000339859 HRNRQ86YZ3 2850 aaPredicted RBP5.92□□□□□ -1.46
USP54-201ENST00000339859 KRTAP13-1Q8IUC0 172 aa5.91□□□□□ -1.46
USP54-201ENST00000339859 SPANXA2-OT1Q8N9U9 137 aa5.91□□□□□ -1.46
USP54-201ENST00000339859 S4R3F8 94 aa5.91□□□□□ -1.46
USP54-201ENST00000339859 ASB16-AS1Q495Z4 193 aa5.9□□□□□ -1.46
USP54-201ENST00000339859 KLKP1Q107X0 134 aa5.89□□□□□ -1.47
USP54-201ENST00000339859 KALRNO60229 2985 aa5.89□□□□□ -1.47
USP54-201ENST00000339859 SPINK7P58062 85 aa5.88□□□□□ -1.47
USP54-201ENST00000339859 ADGRG4Q8IZF6 3080 aa5.88□□□□□ -1.47
USP54-201ENST00000339859 CSAG1Q6PB30 78 aa5.87□□□□□ -1.47
USP54-201ENST00000339859 NOTCH1P46531 2555 aa5.86□□□□□ -1.47
USP54-201ENST00000339859 C4orf26Q17RF5 130 aa5.86□□□□□ -1.47
USP54-201ENST00000339859 KRTAP13-2Q52LG2 175 aa5.86□□□□□ -1.47
USP54-201ENST00000339859 Q5W150 140 aa5.86□□□□□ -1.47
USP54-201ENST00000339859 OCR1Q9BZK8 76 aa5.86□□□□□ -1.47
USP54-201ENST00000339859 Q5XG85 94 aa5.85□□□□□ -1.47
USP54-201ENST00000339859 HRES1P13985 223 aa5.85□□□□□ -1.47
USP54-201ENST00000339859 CYP4F30PQ9H0H9 118 aa5.84□□□□□ -1.47
USP54-201ENST00000339859 PDZD2O15018 2839 aa5.83□□□□□ -1.48
USP54-201ENST00000339859 A0A1B0GVY2 172 aa5.83□□□□□ -1.48
USP54-201ENST00000339859 ANK3Q12955 4377 aaKnown RBP5.83□□□□□ -1.48
USP54-201ENST00000339859 UQCR11O14957 56 aa5.81□□□□□ -1.48
USP54-201ENST00000339859 RPS28P62857 69 aaKnown RBP5.8□□□□□ -1.48
USP54-201ENST00000339859 FBN2P35556 2912 aa5.8□□□□□ -1.48
USP54-201ENST00000339859 LINC01554Q52M75 96 aa5.79□□□□□ -1.48
USP54-201ENST00000339859 LOC400499M0QZD8 3231 aa5.79□□□□□ -1.48
USP54-201ENST00000339859 Q75L30 129 aa5.79□□□□□ -1.48
USP54-201ENST00000339859 Q8N9P0 234 aaPredicted RBP5.77□□□□□ -1.49
USP54-201ENST00000339859 ZZEF1O43149 2961 aa5.77□□□□□ -1.49
USP54-201ENST00000339859 H7BZZ5 65 aa5.76□□□□□ -1.49
USP54-201ENST00000339859 ASH1LQ9NR48 2969 aaKnown RBP5.76□□□□□ -1.49
USP54-201ENST00000339859 RPL37P61927 97 aaKnown RBP5.76□□□□□ -1.49
USP54-201ENST00000339859 PMAIP1Q13794 54 aa5.76□□□□□ -1.49
USP54-201ENST00000339859 SPEGQ15772 3267 aa5.75□□□□□ -1.49
USP54-201ENST00000339859 CELSR2Q9HCU4 2923 aa5.75□□□□□ -1.49
USP54-201ENST00000339859 TACC2O95359 2948 aa5.75□□□□□ -1.49
USP54-201ENST00000339859 MIR22HGQ0VDD5 57 aa5.74□□□□□ -1.49
USP54-201ENST00000339859 DMDP11532 3685 aa5.74□□□□□ -1.49
USP54-201ENST00000339859 NBEAL2Q6ZNJ1 2754 aa5.72□□□□□ -1.49
USP54-201ENST00000339859 KRTAP29-1A8MX34 341 aaPredicted RBP5.72□□□□□ -1.49
USP54-201ENST00000339859 NBPF19A0A087WUL8 3843 aa5.72□□□□□ -1.49
USP54-201ENST00000339859 KRTAP1-4P0C5Y4 121 aa5.71□□□□□ -1.5
USP54-201ENST00000339859 SPINT4Q6UDR6 99 aa5.7□□□□□ -1.5
USP54-201ENST00000339859 A0A0D9SG42 100 aa5.7□□□□□ -1.5
USP54-201ENST00000339859 CRYBG3Q68DQ2 2970 aa5.69□□□□□ -1.5
USP54-201ENST00000339859 DCHS1Q96JQ0 3298 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms