RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 FAM74A4Q5TZK3 123 aa1.84□□□□□ -2.11
NUP88-209ENST00000574855 RPL39LQ96EH5 51 aaKnown RBP1.84□□□□□ -2.11
NUP88-209ENST00000574855 DMAC1Q96GE9 116 aa1.84□□□□□ -2.11
NUP88-209ENST00000574855 LIMD2Q9BT23 127 aa1.84□□□□□ -2.11
NUP88-209ENST00000574855 MAP1BP46821 2468 aaKnown RBP1.84□□□□□ -2.12
NUP88-209ENST00000574855 ABCA1O95477 2261 aa1.84□□□□□ -2.12
NUP88-209ENST00000574855 ABCA4P78363 2273 aa1.84□□□□□ -2.12
NUP88-209ENST00000574855 MUC6Q6W4X9 2439 aa1.83□□□□□ -2.12
NUP88-209ENST00000574855 SPEGQ15772 3267 aa1.83□□□□□ -2.12
NUP88-209ENST00000574855 NAV3Q8IVL0 2385 aa1.83□□□□□ -2.12
NUP88-209ENST00000574855 WDFY3Q8IZQ1 3526 aa1.83□□□□□ -2.12
NUP88-209ENST00000574855 TRBV6-8A0A0A6YYG3 113 aa1.83□□□□□ -2.12
NUP88-209ENST00000574855 A0A0J9YY99 117 aa1.83□□□□□ -2.12
NUP88-209ENST00000574855 IGIPA6NJ69 53 aa1.83□□□□□ -2.12
NUP88-209ENST00000574855 ZNF815PA8K554 130 aa1.83□□□□□ -2.12
NUP88-209ENST00000574855 A8MTW9 85 aa1.83□□□□□ -2.12
NUP88-209ENST00000574855 J3QKU1 62 aa1.83□□□□□ -2.12
NUP88-209ENST00000574855 M0QY20 66 aa1.83□□□□□ -2.12
NUP88-209ENST00000574855 COX6CP09669 75 aa1.83□□□□□ -2.12
NUP88-209ENST00000574855 HTN1P15515 57 aa1.83□□□□□ -2.12
NUP88-209ENST00000574855 DEFB1P60022 68 aa1.83□□□□□ -2.12
NUP88-209ENST00000574855 C10orf99Q6UWK7 81 aa1.83□□□□□ -2.12
NUP88-209ENST00000574855 CDC42SE2Q9NRR3 84 aa1.83□□□□□ -2.12
NUP88-209ENST00000574855 ORMDL1Q9P0S3 153 aa1.83□□□□□ -2.12
NUP88-209ENST00000574855 ANKHD1Q8IWZ3 2542 aaKnown RBP1.83□□□□□ -2.12
NUP88-209ENST00000574855 COL6A3P12111 3177 aa1.83□□□□□ -2.12
NUP88-209ENST00000574855 COL6A6A6NMZ7 2263 aa1.82□□□□□ -2.12
NUP88-209ENST00000574855 F8WEM9 126 aa1.82□□□□□ -2.12
NUP88-209ENST00000574855 SPACA4Q8TDM5 124 aa1.82□□□□□ -2.12
NUP88-209ENST00000574855 TPRP12270 2363 aaKnown RBP1.82□□□□□ -2.12
NUP88-209ENST00000574855 SPTA1P02549 2419 aa1.81□□□□□ -2.12
NUP88-209ENST00000574855 WNK2Q9Y3S1 2297 aa1.81□□□□□ -2.12
NUP88-209ENST00000574855 RPL39P62891 51 aaKnown RBP1.81□□□□□ -2.12
NUP88-209ENST00000574855 DEFB136Q30KP8 78 aa1.81□□□□□ -2.12
NUP88-209ENST00000574855 C20orf197Q8N268 126 aa1.81□□□□□ -2.12
NUP88-209ENST00000574855 TMEM263Q8WUH6 116 aaKnown RBP1.81□□□□□ -2.12
NUP88-209ENST00000574855 FREM2Q5SZK8 3169 aa1.81□□□□□ -2.12
NUP88-209ENST00000574855 VPS13AQ96RL7 3174 aa1.81□□□□□ -2.12
NUP88-209ENST00000574855 MYO15AQ9UKN7 3530 aa1.8□□□□□ -2.12
NUP88-209ENST00000574855 CELSR3Q9NYQ7 3312 aa1.8□□□□□ -2.12
NUP88-209ENST00000574855 TRGV2A0A075B6R0 118 aa1.8□□□□□ -2.12
NUP88-209ENST00000574855 TRGV1A0A0A0MS02 117 aa1.8□□□□□ -2.12
NUP88-209ENST00000574855 TRGV4A0A0C4DH28 118 aa1.8□□□□□ -2.12
NUP88-209ENST00000574855 SPRR5A0A1B0GTR4 108 aa1.8□□□□□ -2.12
NUP88-209ENST00000574855 LOC101927531A0A1B0GV80 90 aa1.8□□□□□ -2.12
NUP88-209ENST00000574855 IGHV3-30P01768 117 aa1.8□□□□□ -2.12
NUP88-209ENST00000574855 IGHV3-30-5P0DP03 117 aa1.8□□□□□ -2.12
NUP88-209ENST00000574855 ELOF1P60002 83 aaKnown RBP1.8□□□□□ -2.12
NUP88-209ENST00000574855 DEFB121Q5J5C9 76 aa1.8□□□□□ -2.12
NUP88-209ENST00000574855 AMELXQ99217 191 aa1.8□□□□□ -2.12
NUP88-209ENST00000574855 FRYLO94915 3013 aa1.8□□□□□ -2.12
NUP88-209ENST00000574855 SPTBN2O15020 2390 aa1.8□□□□□ -2.12
NUP88-209ENST00000574855 ZNF292O60281 2723 aa1.8□□□□□ -2.12
NUP88-209ENST00000574855 MED13LQ71F56 2210 aa1.79□□□□□ -2.12
NUP88-209ENST00000574855 TRBV6-4A0A1B0GX49 114 aa1.79□□□□□ -2.12
NUP88-209ENST00000574855 MUSTN1Q8IVN3 82 aa1.79□□□□□ -2.12
NUP88-209ENST00000574855 NOP10Q9NPE3 64 aaKnown RBP1.79□□□□□ -2.12
NUP88-209ENST00000574855 UBE2D4Q9Y2X8 147 aa1.79□□□□□ -2.12
NUP88-209ENST00000574855 CACNA1BQ00975 2339 aa1.79□□□□□ -2.12
NUP88-209ENST00000574855 SPTBN1Q01082 2364 aaKnown RBP1.79□□□□□ -2.12
NUP88-209ENST00000574855 HIVEP2P31629 2446 aa1.79□□□□□ -2.12
NUP88-209ENST00000574855 HIVEP3Q5T1R4 2406 aa1.79□□□□□ -2.12
NUP88-209ENST00000574855 TLN1Q9Y490 2541 aaKnown RBP1.79□□□□□ -2.12
NUP88-209ENST00000574855 PIEZO2Q9H5I5 2752 aa1.79□□□□□ -2.12
NUP88-209ENST00000574855 CFAP54Q96N23 3096 aa1.79□□□□□ -2.12
NUP88-209ENST00000574855 WDFY4Q6ZS81 3184 aa1.79□□□□□ -2.12
NUP88-209ENST00000574855 IGLV4-60A0A075B6I1 120 aa1.78□□□□□ -2.12
NUP88-209ENST00000574855 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.78□□□□□ -2.12
NUP88-209ENST00000574855 TRBV30A0A0K0K1B3 111 aa1.78□□□□□ -2.12
NUP88-209ENST00000574855 IGKV2-29A2NJV5 120 aaPredicted RBP1.78□□□□□ -2.12
NUP88-209ENST00000574855 LRCOL1A6NCL2 159 aa1.78□□□□□ -2.12
NUP88-209ENST00000574855 NDUFA1O15239 70 aa1.78□□□□□ -2.12
NUP88-209ENST00000574855 PDE6GP18545 87 aa1.78□□□□□ -2.12
NUP88-209ENST00000574855 SPAG11BQ08648 103 aa1.78□□□□□ -2.12
NUP88-209ENST00000574855 ATXN8Q156A1 80 aa1.78□□□□□ -2.12
NUP88-209ENST00000574855 SPAG11AQ6PDA7 123 aa1.78□□□□□ -2.12
NUP88-209ENST00000574855 DEFB104AQ8WTQ1 72 aa1.78□□□□□ -2.12
NUP88-209ENST00000574855 MGAQ8IWI9 3026 aa1.78□□□□□ -2.12
NUP88-209ENST00000574855 ANKRD11Q6UB99 2663 aaPredicted RBP1.78□□□□□ -2.12
NUP88-209ENST00000574855 DMDP11532 3685 aa1.78□□□□□ -2.13
NUP88-209ENST00000574855 NBASA2RRP1 2371 aa1.77□□□□□ -2.13
NUP88-209ENST00000574855 LOC400499M0QZD8 3231 aa1.77□□□□□ -2.13
NUP88-209ENST00000574855 IGKV3D-7A0A0C4DH55 119 aa1.77□□□□□ -2.13
NUP88-209ENST00000574855 IGKV3OR2-268A0A0C4DH90 116 aa1.77□□□□□ -2.13
NUP88-209ENST00000574855 JMJD7-PLA2G4BH0Y9G9 81 aa1.77□□□□□ -2.13
NUP88-209ENST00000574855 CDKN2A-AS1Q9UH64 79 aa1.77□□□□□ -2.13
NUP88-209ENST00000574855 PRO0255Q9UI72 69 aa1.77□□□□□ -2.13
NUP88-209ENST00000574855 AKAP13Q12802 2813 aa1.77□□□□□ -2.13
NUP88-209ENST00000574855 MUC3AQ02505 3323 aa1.77□□□□□ -2.13
NUP88-209ENST00000574855 FRYQ5TBA9 3013 aa1.77□□□□□ -2.13
NUP88-209ENST00000574855 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.77□□□□□ -2.13
NUP88-209ENST00000574855 AKAP6Q13023 2319 aa1.76□□□□□ -2.13
NUP88-209ENST00000574855 SPART-AS1P0CW21 52 aa1.76□□□□□ -2.13
NUP88-209ENST00000574855 DEFB130BP0DP73 79 aa1.76□□□□□ -2.13
NUP88-209ENST00000574855 DEFB130AP0DP74 79 aa1.76□□□□□ -2.13
NUP88-209ENST00000574855 COX7B2Q8TF08 81 aa1.76□□□□□ -2.13
NUP88-209ENST00000574855 IGF2RP11717 2491 aa1.76□□□□□ -2.13
NUP88-209ENST00000574855 A0A1W2PNN7 141 aa1.75□□□□□ -2.13
NUP88-209ENST00000574855 H0YGX0 51 aa1.75□□□□□ -2.13
NUP88-209ENST00000574855 LINC00158P58513 81 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 181.1 ms