RNA–Protein interactions for RNA: ENST00000489028.1

RFC4-213, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-213ENST00000489028 PRKDCP78527 4128 aaKnown RBP-0.08□□□□□ -2.42
RFC4-213ENST00000489028 MAP3K4Q9Y6R4 1608 aa-0.08□□□□□ -2.42
RFC4-213ENST00000489028 RGPD2P0DJD1 1756 aa-0.08□□□□□ -2.42
RFC4-213ENST00000489028 TDRG1Q3Y452 100 aa-0.08□□□□□ -2.42
RFC4-213ENST00000489028 S100A13Q99584 98 aa-0.08□□□□□ -2.42
RFC4-213ENST00000489028 RB1CC1Q8TDY2 1594 aa-0.08□□□□□ -2.42
RFC4-213ENST00000489028 LELP1Q5T871 98 aa-0.09□□□□□ -2.42
RFC4-213ENST00000489028 CNOT1A5YKK6 2376 aaKnown RBP-0.09□□□□□ -2.42
RFC4-213ENST00000489028 PREX1Q8TCU6 1659 aa-0.09□□□□□ -2.42
RFC4-213ENST00000489028 URB2Q14146 1524 aaKnown RBP-0.09□□□□□ -2.42
RFC4-213ENST00000489028 RGPD8O14715 1765 aaPredicted RBP-0.09□□□□□ -2.42
RFC4-213ENST00000489028 PPLO60437 1756 aa-0.09□□□□□ -2.42
RFC4-213ENST00000489028 RGPD5Q99666 1765 aa-0.09□□□□□ -2.42
RFC4-213ENST00000489028 RGPD1P0DJD0 1748 aa-0.1□□□□□ -2.42
RFC4-213ENST00000489028 FLNBO75369 2602 aaKnown RBP-0.1□□□□□ -2.42
RFC4-213ENST00000489028 ADIRFQ15847 76 aa-0.1□□□□□ -2.43
RFC4-213ENST00000489028 REV3LO60673 3130 aa-0.1□□□□□ -2.43
RFC4-213ENST00000489028 ST20Q9HBF5 79 aa-0.11□□□□□ -2.43
RFC4-213ENST00000489028 MUC2Q02817 5179 aa-0.11□□□□□ -2.43
RFC4-213ENST00000489028 COL6A3P12111 3177 aa-0.11□□□□□ -2.43
RFC4-213ENST00000489028 STAB1Q9NY15 2570 aa-0.11□□□□□ -2.43
RFC4-213ENST00000489028 KNL1Q8NG31 2342 aa-0.12□□□□□ -2.43
RFC4-213ENST00000489028 PCNX1Q96RV3 2341 aa-0.12□□□□□ -2.43
RFC4-213ENST00000489028 TMEM131LA2VDJ0 1609 aa-0.12□□□□□ -2.43
RFC4-213ENST00000489028 SUPT6HQ7KZ85 1726 aaKnown RBP-0.12□□□□□ -2.43
RFC4-213ENST00000489028 DSTQ03001 7570 aaKnown RBP-0.12□□□□□ -2.43
RFC4-213ENST00000489028 ZANQ9Y493 2812 aa-0.13□□□□□ -2.43
RFC4-213ENST00000489028 MED14O60244 1454 aa-0.13□□□□□ -2.43
RFC4-213ENST00000489028 NCOA2Q15596 1464 aa-0.13□□□□□ -2.43
RFC4-213ENST00000489028 CCDC18Q5T9S5 1454 aa-0.13□□□□□ -2.43
RFC4-213ENST00000489028 UMAD1C9J7I0 102 aa-0.13□□□□□ -2.43
RFC4-213ENST00000489028 NDUFA3O95167 84 aa-0.13□□□□□ -2.43
RFC4-213ENST00000489028 IFI27P40305 119 aaPredicted RBP-0.13□□□□□ -2.43
RFC4-213ENST00000489028 ATP5EP2Q5VTU8 51 aa-0.13□□□□□ -2.43
RFC4-213ENST00000489028 USP32Q8NFA0 1604 aa-0.13□□□□□ -2.43
RFC4-213ENST00000489028 LRP1BQ9NZR2 4599 aa-0.14□□□□□ -2.43
RFC4-213ENST00000489028 TENM2Q9NT68 2774 aa-0.14□□□□□ -2.43
RFC4-213ENST00000489028 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.15□□□□□ -2.43
RFC4-213ENST00000489028 MUC12Q9UKN1 5478 aa-0.15□□□□□ -2.43
RFC4-213ENST00000489028 H0YGG7 62 aa-0.15□□□□□ -2.43
RFC4-213ENST00000489028 C3orf79P0CE67 100 aa-0.15□□□□□ -2.43
RFC4-213ENST00000489028 KRTAP6-1Q3LI64 71 aa-0.15□□□□□ -2.43
RFC4-213ENST00000489028 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.15□□□□□ -2.43
RFC4-213ENST00000489028 LTN1O94822 1766 aa-0.15□□□□□ -2.43
RFC4-213ENST00000489028 CICQ96RK0 1608 aaPredicted RBP-0.16□□□□□ -2.43
RFC4-213ENST00000489028 MAGI3Q5TCQ9 1506 aa-0.16□□□□□ -2.43
RFC4-213ENST00000489028 PDE4DIPQ5VU43 2346 aa-0.16□□□□□ -2.43
RFC4-213ENST00000489028 DEFB121Q5J5C9 76 aa-0.16□□□□□ -2.44
RFC4-213ENST00000489028 POLR1AO95602 1720 aaPredicted RBP-0.16□□□□□ -2.44
RFC4-213ENST00000489028 TIAM2Q8IVF5 1701 aa-0.16□□□□□ -2.44
RFC4-213ENST00000489028 CCDC88BA6NC98 1476 aa-0.16□□□□□ -2.44
RFC4-213ENST00000489028 SRRM2Q9UQ35 2752 aaKnown RBP-0.17□□□□□ -2.44
RFC4-213ENST00000489028 A0A087WXM4 84 aa-0.17□□□□□ -2.44
RFC4-213ENST00000489028 IFI6P09912 130 aa-0.17□□□□□ -2.44
RFC4-213ENST00000489028 HMGA1P17096 107 aaKnown RBP-0.17□□□□□ -2.44
RFC4-213ENST00000489028 NWD1Q149M9 1564 aa-0.17□□□□□ -2.44
RFC4-213ENST00000489028 PRO3102Q9H379 93 aa-0.17□□□□□ -2.44
RFC4-213ENST00000489028 MAP1AP78559 2803 aaPredicted RBP-0.17□□□□□ -2.44
RFC4-213ENST00000489028 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.18□□□□□ -2.44
RFC4-213ENST00000489028 H3BUT2 72 aa-0.18□□□□□ -2.44
RFC4-213ENST00000489028 PIK3C2BO00750 1634 aa-0.18□□□□□ -2.44
RFC4-213ENST00000489028 PTPN23Q9H3S7 1636 aa-0.18□□□□□ -2.44
RFC4-213ENST00000489028 ADAMTS12P58397 1594 aa-0.19□□□□□ -2.44
RFC4-213ENST00000489028 LINC00158P58513 81 aa-0.19□□□□□ -2.44
RFC4-213ENST00000489028 ERVK-7P63135 1459 aa-0.19□□□□□ -2.44
RFC4-213ENST00000489028 ABCC1P33527 1531 aa-0.19□□□□□ -2.44
RFC4-213ENST00000489028 DCAF1Q9Y4B6 1507 aa-0.19□□□□□ -2.44
RFC4-213ENST00000489028 TRANK1O15050 2925 aa-0.2□□□□□ -2.44
RFC4-213ENST00000489028 SVEP1Q4LDE5 3571 aa-0.2□□□□□ -2.44
RFC4-213ENST00000489028 PKHD1P08F94 4074 aa-0.2□□□□□ -2.44
RFC4-213ENST00000489028 DOT1LQ8TEK3 1739 aa-0.2□□□□□ -2.44
RFC4-213ENST00000489028 NREPQ16612 68 aa-0.2□□□□□ -2.44
RFC4-213ENST00000489028 KRTAP19-7Q3SYF9 63 aa-0.2□□□□□ -2.44
RFC4-213ENST00000489028 BVES-AS1Q5T3Y7 98 aa-0.2□□□□□ -2.44
RFC4-213ENST00000489028 FLGP20930 4061 aaPredicted RBP-0.2□□□□□ -2.44
RFC4-213ENST00000489028 STAB2Q8WWQ8 2551 aa-0.21□□□□□ -2.44
RFC4-213ENST00000489028 KDM5DQ9BY66 1539 aa-0.21□□□□□ -2.44
RFC4-213ENST00000489028 LCE6AA0A183 80 aa-0.21□□□□□ -2.44
RFC4-213ENST00000489028 NDUFA4O00483 81 aa-0.21□□□□□ -2.44
RFC4-213ENST00000489028 SMIM13P0DJ93 91 aa-0.21□□□□□ -2.44
RFC4-213ENST00000489028 SPRR2AP35326 72 aa-0.21□□□□□ -2.44
RFC4-213ENST00000489028 NESP48681 1621 aa-0.21□□□□□ -2.44
RFC4-213ENST00000489028 KMT2CQ8NEZ4 4911 aaKnown RBP-0.21□□□□□ -2.44
RFC4-213ENST00000489028 C4AP0C0L4 1744 aa-0.21□□□□□ -2.44
RFC4-213ENST00000489028 C4BP0C0L5 1744 aa-0.21□□□□□ -2.44
RFC4-213ENST00000489028 ARFGEF2Q9Y6D5 1785 aa-0.22□□□□□ -2.44
RFC4-213ENST00000489028 ARHGAP35Q9NRY4 1499 aa-0.22□□□□□ -2.44
RFC4-213ENST00000489028 PDZD2O15018 2839 aa-0.22□□□□□ -2.44
RFC4-213ENST00000489028 DIP2BQ9P265 1576 aa-0.22□□□□□ -2.44
RFC4-213ENST00000489028 NBASA2RRP1 2371 aa-0.22□□□□□ -2.44
RFC4-213ENST00000489028 ZNF831Q5JPB2 1677 aa-0.22□□□□□ -2.44
RFC4-213ENST00000489028 CREBBPQ92793 2442 aa-0.22□□□□□ -2.44
RFC4-213ENST00000489028 NBEAL1Q6ZS30 2694 aa-0.22□□□□□ -2.45
RFC4-213ENST00000489028 HECTD1Q9ULT8 2610 aa-0.23□□□□□ -2.45
RFC4-213ENST00000489028 TGP01266 2768 aa-0.23□□□□□ -2.45
RFC4-213ENST00000489028 HERC1Q15751 4861 aa-0.24□□□□□ -2.45
RFC4-213ENST00000489028 PKD1P98161 4303 aa-0.24□□□□□ -2.45
RFC4-213ENST00000489028 FAT1Q14517 4588 aa-0.24□□□□□ -2.45
RFC4-213ENST00000489028 LAMA5O15230 3695 aa-0.24□□□□□ -2.45
RFC4-213ENST00000489028 PLXNC1O60486 1568 aa-0.24□□□□□ -2.45
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms