RNA–Protein interactions for RNA: ENST00000489028.1

RFC4-213, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-213ENST00000489028 AEBP2Q6ZN18 517 aaPredicted RBP21.99■■□□□ 1.11
RFC4-213ENST00000489028 CHIC1Q5VXU3 224 aa21.32■■□□□ 1
RFC4-213ENST00000489028 PHF23Q9BUL5 403 aaPredicted RBP18.8■□□□□ 0.6
RFC4-213ENST00000489028 SENP3Q9H4L4 574 aaPredicted RBP18.56■□□□□ 0.56
RFC4-213ENST00000489028 FOXD1Q16676 465 aa17.32■□□□□ 0.36
RFC4-213ENST00000489028 PLPPR3Q6T4P5 718 aa17.21■□□□□ 0.35
RFC4-213ENST00000489028 PPP6R1Q9UPN7 881 aa16.62■□□□□ 0.25
RFC4-213ENST00000489028 ADRA2BP18089 450 aa16.58■□□□□ 0.24
RFC4-213ENST00000489028 PIAS4Q8N2W9 510 aaPredicted RBP16.26■□□□□ 0.19
RFC4-213ENST00000489028 MSH5O43196 834 aa15.91■□□□□ 0.14
RFC4-213ENST00000489028 PPP4R3CPQ6ZMV5 832 aa15.2■□□□□ 0.02
RFC4-213ENST00000489028 MAPK8IP2Q13387 824 aaPredicted RBP15.09■□□□□ 0.01
RFC4-213ENST00000489028 SCAF1Q9H7N4 1312 aaKnown RBP15.03■□□□□ -0
RFC4-213ENST00000489028 DMRT2Q9Y5R5 561 aa14.84□□□□□ -0.03
RFC4-213ENST00000489028 KCNA4P22459 653 aa14.78□□□□□ -0.04
RFC4-213ENST00000489028 CNKSR2Q8WXI2 1034 aa14.76□□□□□ -0.05
RFC4-213ENST00000489028 POTEDQ86YR6 584 aa14.73□□□□□ -0.05
RFC4-213ENST00000489028 NCBP3Q53F19 620 aaKnown RBP14.69□□□□□ -0.06
RFC4-213ENST00000489028 NPM3O75607 178 aaKnown RBP14.58□□□□□ -0.08
RFC4-213ENST00000489028 HOXD11P31277 338 aaPredicted RBP14.5□□□□□ -0.09
RFC4-213ENST00000489028 RNF216Q9NWF9 866 aaPredicted RBP14.5□□□□□ -0.09
RFC4-213ENST00000489028 DCAF8L1A6NGE4 600 aa14.17□□□□□ -0.14
RFC4-213ENST00000489028 DNAJC5BQ9UF47 199 aa14.13□□□□□ -0.15
RFC4-213ENST00000489028 SLC4A1APQ9BWU0 796 aaKnown RBP14.01□□□□□ -0.17
RFC4-213ENST00000489028 SLC4A2P04920 1241 aa13.82□□□□□ -0.2
RFC4-213ENST00000489028 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.77□□□□□ -0.21
RFC4-213ENST00000489028 RNF39Q9H2S5 420 aa13.68□□□□□ -0.22
RFC4-213ENST00000489028 ZBTB22O15209 634 aa13.65□□□□□ -0.22
RFC4-213ENST00000489028 U3KPZ7 1027 aaPredicted RBP13.61□□□□□ -0.23
RFC4-213ENST00000489028 FOXD4L1Q9NU39 408 aa13.57□□□□□ -0.24
RFC4-213ENST00000489028 EHMT2Q96KQ7 1210 aa13.53□□□□□ -0.24
RFC4-213ENST00000489028 C1QBPQ07021 282 aaKnown RBP13.46□□□□□ -0.25
RFC4-213ENST00000489028 CSRNP3Q8WYN3 585 aa13.44□□□□□ -0.26
RFC4-213ENST00000489028 MYCNP04198 464 aaPredicted RBP13.42□□□□□ -0.26
RFC4-213ENST00000489028 CACNB1Q02641 598 aaPredicted RBP13.35□□□□□ -0.27
RFC4-213ENST00000489028 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.27□□□□□ -0.29
RFC4-213ENST00000489028 HNRNPUL2Q1KMD3 747 aaKnown RBP13.27□□□□□ -0.29
RFC4-213ENST00000489028 SPINK5Q9NQ38 1064 aaPredicted RBP13.27□□□□□ -0.29
RFC4-213ENST00000489028 SAMD1Q6SPF0 538 aaPredicted RBP13.26□□□□□ -0.29
RFC4-213ENST00000489028 ATF5Q9Y2D1 282 aaPredicted RBP13.17□□□□□ -0.3
RFC4-213ENST00000489028 CAPN15O75808 1086 aa13.15□□□□□ -0.3
RFC4-213ENST00000489028 APLP2Q06481 763 aa13.13□□□□□ -0.31
RFC4-213ENST00000489028 TRHP20396 242 aaPredicted RBP13.08□□□□□ -0.32
RFC4-213ENST00000489028 ATXN8OSP0DMR3 200 aa13.07□□□□□ -0.32
RFC4-213ENST00000489028 ZNF219Q9P2Y4 722 aaPredicted RBP13.02□□□□□ -0.33
RFC4-213ENST00000489028 DSG3P32926 999 aa12.99□□□□□ -0.33
RFC4-213ENST00000489028 ABCB7O75027 752 aa12.95□□□□□ -0.34
RFC4-213ENST00000489028 POLA2Q14181 598 aa12.85□□□□□ -0.35
RFC4-213ENST00000489028 MKRN4PQ13434 485 aaPredicted RBP12.59□□□□□ -0.39
RFC4-213ENST00000489028 ZBTB12Q9Y330 459 aaPredicted RBP12.55□□□□□ -0.4
RFC4-213ENST00000489028 FBLN2P98095 1184 aa12.49□□□□□ -0.41
RFC4-213ENST00000489028 OSCARQ8IYS5 282 aa12.45□□□□□ -0.42
RFC4-213ENST00000489028 RBM42Q9BTD8 480 aaKnown RBP12.29□□□□□ -0.44
RFC4-213ENST00000489028 SPDYE2BA6NHP3 402 aa12.25□□□□□ -0.45
RFC4-213ENST00000489028 SPDYE6P0CI01 402 aa12.25□□□□□ -0.45
RFC4-213ENST00000489028 SPDYE2Q495Y8 402 aa12.25□□□□□ -0.45
RFC4-213ENST00000489028 ZNF692Q9BU19 519 aaPredicted RBP12.19□□□□□ -0.46
RFC4-213ENST00000489028 SSUH2Q9Y2M2 353 aa12.19□□□□□ -0.46
RFC4-213ENST00000489028 SPDYE4A6NLX3 237 aa12.18□□□□□ -0.46
RFC4-213ENST00000489028 AKT1S1Q96B36 256 aa12.16□□□□□ -0.46
RFC4-213ENST00000489028 FKBP8Q14318 412 aa12.12□□□□□ -0.47
RFC4-213ENST00000489028 REM2Q8IYK8 340 aaPredicted RBP12.08□□□□□ -0.48
RFC4-213ENST00000489028 PABPN1Q86U42 306 aaKnown RBP eCLIP12.06□□□□□ -0.48
RFC4-213ENST00000489028 PROM2Q8N271 834 aa12.01□□□□□ -0.49
RFC4-213ENST00000489028 PITPNM1O00562 1244 aa11.96□□□□□ -0.49
RFC4-213ENST00000489028 SPDYE1Q8NFV5 336 aaPredicted RBP11.9□□□□□ -0.5
RFC4-213ENST00000489028 CHRDL2Q6WN34 429 aa11.88□□□□□ -0.51
RFC4-213ENST00000489028 CLEC11AQ9Y240 323 aa11.87□□□□□ -0.51
RFC4-213ENST00000489028 STAG3Q9UJ98 1225 aa11.76□□□□□ -0.53
RFC4-213ENST00000489028 FXR2P51116 673 aaKnown RBP eCLIP11.74□□□□□ -0.53
RFC4-213ENST00000489028 PIP4P2Q8N4L2 257 aa11.74□□□□□ -0.53
RFC4-213ENST00000489028 PRR29P0C7W0 189 aa11.73□□□□□ -0.53
RFC4-213ENST00000489028 CHADLQ6NUI6 762 aa11.65□□□□□ -0.54
RFC4-213ENST00000489028 PRKAR2AP13861 404 aaKnown RBP11.63□□□□□ -0.55
RFC4-213ENST00000489028 CREBZFQ9NS37 354 aa11.63□□□□□ -0.55
RFC4-213ENST00000489028 FBXO3Q9UK99 471 aa11.63□□□□□ -0.55
RFC4-213ENST00000489028 POTEHQ6S545 545 aa11.61□□□□□ -0.55
RFC4-213ENST00000489028 VASPP50552 380 aaPredicted RBP11.56□□□□□ -0.56
RFC4-213ENST00000489028 MIER1Q8N108 512 aa11.53□□□□□ -0.56
RFC4-213ENST00000489028 MNX1P50219 401 aaPredicted RBP11.52□□□□□ -0.57
RFC4-213ENST00000489028 PLCD3Q8N3E9 789 aa11.5□□□□□ -0.57
RFC4-213ENST00000489028 FARP1Q9Y4F1 1045 aaPredicted RBP11.49□□□□□ -0.57
RFC4-213ENST00000489028 IFNLR1Q8IU57 520 aaPredicted RBP11.42□□□□□ -0.58
RFC4-213ENST00000489028 PLEKHG5O94827 1062 aa11.39□□□□□ -0.59
RFC4-213ENST00000489028 C19orf67A6NJJ6 358 aa11.35□□□□□ -0.59
RFC4-213ENST00000489028 HAX1O00165 279 aa11.34□□□□□ -0.59
RFC4-213ENST00000489028 NPM1P06748 294 aaKnown RBP eCLIP11.34□□□□□ -0.59
RFC4-213ENST00000489028 EVX2Q03828 476 aa11.34□□□□□ -0.59
RFC4-213ENST00000489028 KLHL34Q8N239 644 aa11.33□□□□□ -0.6
RFC4-213ENST00000489028 ZBTB47Q9UFB7 747 aaPredicted RBP11.32□□□□□ -0.6
RFC4-213ENST00000489028 NUBP1P53384 320 aa11.31□□□□□ -0.6
RFC4-213ENST00000489028 RASEFQ8IZ41 740 aa11.3□□□□□ -0.6
RFC4-213ENST00000489028 CD44P16070 742 aaKnown RBP11.29□□□□□ -0.6
RFC4-213ENST00000489028 SPOCK2Q92563 424 aa11.24□□□□□ -0.61
RFC4-213ENST00000489028 TSPYL2Q9H2G4 693 aaPredicted RBP11.22□□□□□ -0.61
RFC4-213ENST00000489028 ZRANB1Q9UGI0 708 aa11.21□□□□□ -0.61
RFC4-213ENST00000489028 CCDC61Q9Y6R9 512 aa11.16□□□□□ -0.62
RFC4-213ENST00000489028 PAK3O75914 559 aaPredicted RBP11.15□□□□□ -0.62
RFC4-213ENST00000489028 ZNF579Q8NAF0 562 aaKnown RBP11.15□□□□□ -0.62
RFC4-213ENST00000489028 FAM212AQ96EL1 285 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 143.9 ms