RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 FMN2Q9NZ56 1722 aa-0.52□□□□□ -2.49
SMCHD1-209ENST00000583441 CCL22O00626 93 aa-0.52□□□□□ -2.49
SMCHD1-209ENST00000583441 COL5A1-AS1Q5SY13 56 aa-0.52□□□□□ -2.49
SMCHD1-209ENST00000583441 ZNF720Q7Z2F6 126 aa-0.52□□□□□ -2.49
SMCHD1-209ENST00000583441 LRRC37AA6NMS7 1700 aa-0.52□□□□□ -2.49
SMCHD1-209ENST00000583441 CNTLNQ9NXG0 1405 aa-0.53□□□□□ -2.49
SMCHD1-209ENST00000583441 H1FX-AS1Q4G0G2 97 aa-0.53□□□□□ -2.49
SMCHD1-209ENST00000583441 MAP1AP78559 2803 aaPredicted RBP-0.53□□□□□ -2.49
SMCHD1-209ENST00000583441 UQCRHLA0A096LP55 91 aa-0.54□□□□□ -2.5
SMCHD1-209ENST00000583441 ETDBQ3ZM63 59 aa-0.54□□□□□ -2.5
SMCHD1-209ENST00000583441 MRPL34Q9BQ48 92 aaKnown RBP-0.54□□□□□ -2.5
SMCHD1-209ENST00000583441 TARBP1Q13395 1621 aaKnown RBP-0.54□□□□□ -2.5
SMCHD1-209ENST00000583441 SLIT1O75093 1534 aa-0.54□□□□□ -2.5
SMCHD1-209ENST00000583441 KNDC1Q76NI1 1749 aa-0.55□□□□□ -2.5
SMCHD1-209ENST00000583441 TRBV7-7A0A0K0K1E9 115 aa-0.55□□□□□ -2.5
SMCHD1-209ENST00000583441 SPTY2D1-AS1A0A0U1RR47 76 aa-0.55□□□□□ -2.5
SMCHD1-209ENST00000583441 DEFB135Q30KP9 77 aa-0.55□□□□□ -2.5
SMCHD1-209ENST00000583441 STAB2Q8WWQ8 2551 aa-0.55□□□□□ -2.5
SMCHD1-209ENST00000583441 NBEAL1Q6ZS30 2694 aa-0.56□□□□□ -2.5
SMCHD1-209ENST00000583441 PEG3Q9GZU2 1588 aa-0.56□□□□□ -2.5
SMCHD1-209ENST00000583441 D6R8Y8 96 aa-0.56□□□□□ -2.5
SMCHD1-209ENST00000583441 FAUP35544 74 aaKnown RBP-0.56□□□□□ -2.5
SMCHD1-209ENST00000583441 MUSTN1Q8IVN3 82 aa-0.56□□□□□ -2.5
SMCHD1-209ENST00000583441 PAPPA2Q9BXP8 1791 aa-0.56□□□□□ -2.5
SMCHD1-209ENST00000583441 MARF1Q9Y4F3 1742 aaKnown RBP-0.56□□□□□ -2.5
SMCHD1-209ENST00000583441 NRXN1Q9ULB1 1477 aa-0.56□□□□□ -2.5
SMCHD1-209ENST00000583441 SHPRHQ149N8 1683 aa-0.56□□□□□ -2.5
SMCHD1-209ENST00000583441 CLIP1P30622 1438 aa-0.56□□□□□ -2.5
SMCHD1-209ENST00000583441 SAMD9Q5K651 1589 aa-0.57□□□□□ -2.5
SMCHD1-209ENST00000583441 LEPROTL1O95214 131 aa-0.57□□□□□ -2.5
SMCHD1-209ENST00000583441 C9orf62Q8N4C0 152 aa-0.57□□□□□ -2.5
SMCHD1-209ENST00000583441 CREBBPQ92793 2442 aa-0.57□□□□□ -2.5
SMCHD1-209ENST00000583441 M0R143 59 aa-0.58□□□□□ -2.5
SMCHD1-209ENST00000583441 PSENENQ9NZ42 101 aa-0.58□□□□□ -2.5
SMCHD1-209ENST00000583441 F8WEM9 126 aa-0.59□□□□□ -2.5
SMCHD1-209ENST00000583441 CDKN2A-AS1Q9UH64 79 aa-0.59□□□□□ -2.5
SMCHD1-209ENST00000583441 EPRSP07814 1512 aaKnown RBP-0.59□□□□□ -2.5
SMCHD1-209ENST00000583441 CUX1P39880 1505 aa-0.59□□□□□ -2.5
SMCHD1-209ENST00000583441 KIAA1551Q9HCM1 1747 aa-0.6□□□□□ -2.51
SMCHD1-209ENST00000583441 IGLC2P0DOY2 106 aa-0.6□□□□□ -2.51
SMCHD1-209ENST00000583441 IGLC3P0DOY3 106 aa-0.6□□□□□ -2.51
SMCHD1-209ENST00000583441 NCMAPQ5T1S8 102 aa-0.6□□□□□ -2.51
SMCHD1-209ENST00000583441 CNOT1A5YKK6 2376 aaKnown RBP-0.6□□□□□ -2.51
SMCHD1-209ENST00000583441 LRP1BQ9NZR2 4599 aa-0.61□□□□□ -2.51
SMCHD1-209ENST00000583441 HEPN1Q6WQI6 88 aa-0.61□□□□□ -2.51
SMCHD1-209ENST00000583441 HIGD1BQ9P298 99 aa-0.61□□□□□ -2.51
SMCHD1-209ENST00000583441 NF1P21359 2839 aa-0.62□□□□□ -2.51
SMCHD1-209ENST00000583441 SPRR2AP35326 72 aa-0.63□□□□□ -2.51
SMCHD1-209ENST00000583441 SMIM11AP58511 58 aa-0.63□□□□□ -2.51
SMCHD1-209ENST00000583441 UBE2D4Q9Y2X8 147 aa-0.63□□□□□ -2.51
SMCHD1-209ENST00000583441 PCNX1Q96RV3 2341 aa-0.63□□□□□ -2.51
SMCHD1-209ENST00000583441 HERC1Q15751 4861 aa-0.64□□□□□ -2.51
SMCHD1-209ENST00000583441 DOPEY1Q5JWR5 2465 aa-0.64□□□□□ -2.51
SMCHD1-209ENST00000583441 C5P01031 1676 aa-0.64□□□□□ -2.51
SMCHD1-209ENST00000583441 FANCAO15360 1455 aa-0.64□□□□□ -2.51
SMCHD1-209ENST00000583441 GYPAP02724 150 aa-0.64□□□□□ -2.51
SMCHD1-209ENST00000583441 DEFB112Q30KQ8 113 aa-0.64□□□□□ -2.51
SMCHD1-209ENST00000583441 VPS8Q8N3P4 1428 aa-0.64□□□□□ -2.51
SMCHD1-209ENST00000583441 RYR3Q15413 4870 aa-0.65□□□□□ -2.51
SMCHD1-209ENST00000583441 S100A8P05109 93 aa-0.65□□□□□ -2.51
SMCHD1-209ENST00000583441 KRTAP19-8Q3LI54 63 aa-0.65□□□□□ -2.51
SMCHD1-209ENST00000583441 NMSQ5H8A3 153 aa-0.65□□□□□ -2.51
SMCHD1-209ENST00000583441 MON2Q7Z3U7 1717 aa-0.65□□□□□ -2.51
SMCHD1-209ENST00000583441 HERC2O95714 4834 aa-0.66□□□□□ -2.52
SMCHD1-209ENST00000583441 ATP10BO94823 1461 aa-0.67□□□□□ -2.52
SMCHD1-209ENST00000583441 KRTAP20-2Q3LI61 65 aa-0.67□□□□□ -2.52
SMCHD1-209ENST00000583441 WFDC13Q8IUB5 93 aa-0.67□□□□□ -2.52
SMCHD1-209ENST00000583441 CLTCQ00610 1675 aaKnown RBP-0.68□□□□□ -2.52
SMCHD1-209ENST00000583441 HMGN2P05204 90 aaKnown RBP-0.68□□□□□ -2.52
SMCHD1-209ENST00000583441 PKIAP61925 76 aa-0.68□□□□□ -2.52
SMCHD1-209ENST00000583441 COX6B2Q6YFQ2 88 aa-0.68□□□□□ -2.52
SMCHD1-209ENST00000583441 PKHD1P08F94 4074 aa-0.68□□□□□ -2.52
SMCHD1-209ENST00000583441 TGP01266 2768 aa-0.68□□□□□ -2.52
SMCHD1-209ENST00000583441 COX7BP24311 80 aa-0.69□□□□□ -2.52
SMCHD1-209ENST00000583441 RPL38P63173 70 aaKnown RBP-0.69□□□□□ -2.52
SMCHD1-209ENST00000583441 ABCC10Q5T3U5 1492 aa-0.69□□□□□ -2.52
SMCHD1-209ENST00000583441 MAGI2Q86UL8 1455 aa-0.69□□□□□ -2.52
SMCHD1-209ENST00000583441 ANKRD36A6QL64 1941 aa-0.7□□□□□ -2.52
SMCHD1-209ENST00000583441 USH2AO75445 5202 aa-0.7□□□□□ -2.52
SMCHD1-209ENST00000583441 PEA15Q15121 130 aa-0.7□□□□□ -2.52
SMCHD1-209ENST00000583441 PLGLAQ15195 96 aa-0.7□□□□□ -2.52
SMCHD1-209ENST00000583441 KRTAP6-2Q3LI66 62 aa-0.7□□□□□ -2.52
SMCHD1-209ENST00000583441 LELP1Q5T871 98 aa-0.7□□□□□ -2.52
SMCHD1-209ENST00000583441 SETD2Q9BYW2 2564 aaPredicted RBP-0.71□□□□□ -2.52
SMCHD1-209ENST00000583441 A0A1B0GUT8 65 aa-0.71□□□□□ -2.52
SMCHD1-209ENST00000583441 SNHG12Q9BXW3 62 aa-0.71□□□□□ -2.52
SMCHD1-209ENST00000583441 FAT1Q14517 4588 aa-0.72□□□□□ -2.52
SMCHD1-209ENST00000583441 FLGP20930 4061 aaPredicted RBP-0.72□□□□□ -2.52
SMCHD1-209ENST00000583441 CRYBG1Q9Y4K1 1723 aa-0.72□□□□□ -2.52
SMCHD1-209ENST00000583441 HYDINQ4G0P3 5121 aa-0.72□□□□□ -2.52
SMCHD1-209ENST00000583441 H0YGG7 62 aa-0.72□□□□□ -2.52
SMCHD1-209ENST00000583441 MXRA5Q9NR99 2828 aa-0.72□□□□□ -2.53
SMCHD1-209ENST00000583441 KIAA1109Q2LD37 5005 aa-0.72□□□□□ -2.53
SMCHD1-209ENST00000583441 UBR4Q5T4S7 5183 aa-0.72□□□□□ -2.53
SMCHD1-209ENST00000583441 COL14A1Q05707 1796 aaKnown RBP-0.73□□□□□ -2.53
SMCHD1-209ENST00000583441 BAZ1AQ9NRL2 1556 aaPredicted RBP-0.73□□□□□ -2.53
SMCHD1-209ENST00000583441 CYB5AP00167 134 aa-0.73□□□□□ -2.53
SMCHD1-209ENST00000583441 REV3LO60673 3130 aa-0.73□□□□□ -2.53
SMCHD1-209ENST00000583441 RYR1P21817 5038 aa-0.74□□□□□ -2.53
SMCHD1-209ENST00000583441 SPRR2EP22531 72 aa-0.74□□□□□ -2.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms