RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 PDZD2O15018 2839 aa-0.58□□□□□ -2.5
CCDC88A-212ENST00000474059 FYCO1Q9BQS8 1478 aa-0.58□□□□□ -2.5
CCDC88A-212ENST00000474059 ATOX1O00244 68 aa-0.58□□□□□ -2.5
CCDC88A-212ENST00000474059 ARMS2P0C7Q2 107 aa-0.58□□□□□ -2.5
CCDC88A-212ENST00000474059 MRPL34Q9BQ48 92 aaKnown RBP-0.58□□□□□ -2.5
CCDC88A-212ENST00000474059 TCEAL7Q9BRU2 100 aa-0.58□□□□□ -2.5
CCDC88A-212ENST00000474059 CHD8Q9HCK8 2581 aa-0.58□□□□□ -2.5
CCDC88A-212ENST00000474059 MAP1AP78559 2803 aaPredicted RBP-0.59□□□□□ -2.5
CCDC88A-212ENST00000474059 SERP2Q8N6R1 65 aa-0.59□□□□□ -2.5
CCDC88A-212ENST00000474059 SAMD9Q5K651 1589 aa-0.59□□□□□ -2.5
CCDC88A-212ENST00000474059 ACANP16112 2415 aa-0.59□□□□□ -2.5
CCDC88A-212ENST00000474059 CRYBG1Q9Y4K1 1723 aa-0.6□□□□□ -2.51
CCDC88A-212ENST00000474059 CNTLNQ9NXG0 1405 aa-0.6□□□□□ -2.51
CCDC88A-212ENST00000474059 ATP6V1G2-DDX39BF2Z307 99 aa-0.6□□□□□ -2.51
CCDC88A-212ENST00000474059 FLGP20930 4061 aaPredicted RBP-0.6□□□□□ -2.51
CCDC88A-212ENST00000474059 KIF20BQ96Q89 1820 aa-0.6□□□□□ -2.51
CCDC88A-212ENST00000474059 CLTCQ00610 1675 aaKnown RBP-0.6□□□□□ -2.51
CCDC88A-212ENST00000474059 PKHD1P08F94 4074 aa-0.61□□□□□ -2.51
CCDC88A-212ENST00000474059 KRTAP6-2Q3LI66 62 aa-0.61□□□□□ -2.51
CCDC88A-212ENST00000474059 SVEP1Q4LDE5 3571 aa-0.61□□□□□ -2.51
CCDC88A-212ENST00000474059 TEX14Q8IWB6 1497 aa-0.61□□□□□ -2.51
CCDC88A-212ENST00000474059 BCORQ6W2J9 1755 aa-0.62□□□□□ -2.51
CCDC88A-212ENST00000474059 TRBV7-7A0A0K0K1E9 115 aa-0.62□□□□□ -2.51
CCDC88A-212ENST00000474059 SPTY2D1-AS1A0A0U1RR47 76 aa-0.62□□□□□ -2.51
CCDC88A-212ENST00000474059 SPRR2AP35326 72 aa-0.62□□□□□ -2.51
CCDC88A-212ENST00000474059 RBP2P50120 134 aa-0.62□□□□□ -2.51
CCDC88A-212ENST00000474059 LELP1Q5T871 98 aa-0.62□□□□□ -2.51
CCDC88A-212ENST00000474059 RGPD2P0DJD1 1756 aa-0.62□□□□□ -2.51
CCDC88A-212ENST00000474059 PKD1L3Q7Z443 1732 aa-0.63□□□□□ -2.51
CCDC88A-212ENST00000474059 CCL22O00626 93 aa-0.63□□□□□ -2.51
CCDC88A-212ENST00000474059 KRTAP19-8Q3LI54 63 aa-0.63□□□□□ -2.51
CCDC88A-212ENST00000474059 ETDBQ3ZM63 59 aa-0.63□□□□□ -2.51
CCDC88A-212ENST00000474059 COL5A1-AS1Q5SY13 56 aa-0.63□□□□□ -2.51
CCDC88A-212ENST00000474059 C9orf62Q8N4C0 152 aa-0.63□□□□□ -2.51
CCDC88A-212ENST00000474059 CREBBPQ92793 2442 aa-0.64□□□□□ -2.51
CCDC88A-212ENST00000474059 F8WEM9 126 aa-0.64□□□□□ -2.51
CCDC88A-212ENST00000474059 LINC00032P0C843 101 aa-0.64□□□□□ -2.51
CCDC88A-212ENST00000474059 DPY30Q9C005 99 aa-0.64□□□□□ -2.51
CCDC88A-212ENST00000474059 PSENENQ9NZ42 101 aa-0.64□□□□□ -2.51
CCDC88A-212ENST00000474059 PCNX1Q96RV3 2341 aa-0.64□□□□□ -2.51
CCDC88A-212ENST00000474059 QSER1Q2KHR3 1735 aa-0.64□□□□□ -2.51
CCDC88A-212ENST00000474059 CNOT1A5YKK6 2376 aaKnown RBP-0.64□□□□□ -2.51
CCDC88A-212ENST00000474059 UQCRHLA0A096LP55 91 aa-0.65□□□□□ -2.51
CCDC88A-212ENST00000474059 D6R8Y8 96 aa-0.65□□□□□ -2.51
CCDC88A-212ENST00000474059 LEPROTL1O95214 131 aa-0.65□□□□□ -2.51
CCDC88A-212ENST00000474059 HMGN3Q15651 99 aa-0.65□□□□□ -2.51
CCDC88A-212ENST00000474059 DEFB112Q30KQ8 113 aa-0.65□□□□□ -2.51
CCDC88A-212ENST00000474059 KRTAP20-2Q3LI61 65 aa-0.65□□□□□ -2.51
CCDC88A-212ENST00000474059 HEPN1Q6WQI6 88 aa-0.65□□□□□ -2.51
CCDC88A-212ENST00000474059 ZNF720Q7Z2F6 126 aa-0.65□□□□□ -2.51
CCDC88A-212ENST00000474059 MUSTN1Q8IVN3 82 aa-0.65□□□□□ -2.51
CCDC88A-212ENST00000474059 ANKRD26Q9UPS8 1709 aa-0.65□□□□□ -2.51
CCDC88A-212ENST00000474059 CLIP1P30622 1438 aa-0.65□□□□□ -2.51
CCDC88A-212ENST00000474059 KMT2CQ8NEZ4 4911 aaKnown RBP-0.65□□□□□ -2.51
CCDC88A-212ENST00000474059 IGLC2P0DOY2 106 aa-0.66□□□□□ -2.52
CCDC88A-212ENST00000474059 IGLC3P0DOY3 106 aa-0.66□□□□□ -2.52
CCDC88A-212ENST00000474059 FAUP35544 74 aaKnown RBP-0.66□□□□□ -2.52
CCDC88A-212ENST00000474059 NCMAPQ5T1S8 102 aa-0.66□□□□□ -2.52
CCDC88A-212ENST00000474059 ACBD7Q8N6N7 88 aa-0.66□□□□□ -2.52
CCDC88A-212ENST00000474059 EPRSP07814 1512 aaKnown RBP-0.66□□□□□ -2.52
CCDC88A-212ENST00000474059 PCLOQ9Y6V0 5065 aa-0.67□□□□□ -2.52
CCDC88A-212ENST00000474059 ALKQ9UM73 1620 aa-0.67□□□□□ -2.52
CCDC88A-212ENST00000474059 MYH4Q9Y623 1939 aa-0.67□□□□□ -2.52
CCDC88A-212ENST00000474059 ALKAL2Q6UX46 152 aa-0.67□□□□□ -2.52
CCDC88A-212ENST00000474059 CDKN2A-AS1Q9UH64 79 aa-0.67□□□□□ -2.52
CCDC88A-212ENST00000474059 ADAMTS12P58397 1594 aa-0.67□□□□□ -2.52
CCDC88A-212ENST00000474059 FANCAO15360 1455 aa-0.67□□□□□ -2.52
CCDC88A-212ENST00000474059 NEBP20929 6669 aa-0.68□□□□□ -2.52
CCDC88A-212ENST00000474059 SPRR2EP22531 72 aa-0.68□□□□□ -2.52
CCDC88A-212ENST00000474059 WFDC13Q8IUB5 93 aa-0.68□□□□□ -2.52
CCDC88A-212ENST00000474059 HIGD1BQ9P298 99 aa-0.68□□□□□ -2.52
CCDC88A-212ENST00000474059 PTPN23Q9H3S7 1636 aa-0.68□□□□□ -2.52
CCDC88A-212ENST00000474059 SETD2Q9BYW2 2564 aaPredicted RBP-0.68□□□□□ -2.52
CCDC88A-212ENST00000474059 PREX1Q8TCU6 1659 aa-0.69□□□□□ -2.52
CCDC88A-212ENST00000474059 NBEAL1Q6ZS30 2694 aa-0.69□□□□□ -2.52
CCDC88A-212ENST00000474059 AKAP12Q02952 1782 aa-0.69□□□□□ -2.52
CCDC88A-212ENST00000474059 UBE2D4Q9Y2X8 147 aa-0.69□□□□□ -2.52
CCDC88A-212ENST00000474059 MAGI2Q86UL8 1455 aa-0.7□□□□□ -2.52
CCDC88A-212ENST00000474059 MYO3AQ8NEV4 1616 aa-0.71□□□□□ -2.52
CCDC88A-212ENST00000474059 HERC1Q15751 4861 aa-0.71□□□□□ -2.52
CCDC88A-212ENST00000474059 ABCC10Q5T3U5 1492 aa-0.71□□□□□ -2.52
CCDC88A-212ENST00000474059 UBR1Q8IWV7 1749 aa-0.71□□□□□ -2.52
CCDC88A-212ENST00000474059 M0R143 59 aa-0.71□□□□□ -2.52
CCDC88A-212ENST00000474059 UBR3Q6ZT12 1888 aa-0.71□□□□□ -2.52
CCDC88A-212ENST00000474059 CICQ96RK0 1608 aaPredicted RBP-0.71□□□□□ -2.52
CCDC88A-212ENST00000474059 RGPD1P0DJD0 1748 aa-0.72□□□□□ -2.52
CCDC88A-212ENST00000474059 ATP10BO94823 1461 aa-0.72□□□□□ -2.52
CCDC88A-212ENST00000474059 LRRC7Q96NW7 1537 aa-0.72□□□□□ -2.52
CCDC88A-212ENST00000474059 REV3LO60673 3130 aa-0.73□□□□□ -2.53
CCDC88A-212ENST00000474059 STAB2Q8WWQ8 2551 aa-0.73□□□□□ -2.53
CCDC88A-212ENST00000474059 COX7BP24311 80 aa-0.73□□□□□ -2.53
CCDC88A-212ENST00000474059 MT4P47944 62 aa-0.73□□□□□ -2.53
CCDC88A-212ENST00000474059 C4AP0C0L4 1744 aa-0.73□□□□□ -2.53
CCDC88A-212ENST00000474059 C4BP0C0L5 1744 aa-0.73□□□□□ -2.53
CCDC88A-212ENST00000474059 HERC2O95714 4834 aa-0.73□□□□□ -2.53
CCDC88A-212ENST00000474059 SUPT6HQ7KZ85 1726 aaKnown RBP-0.74□□□□□ -2.53
CCDC88A-212ENST00000474059 LAMA5O15230 3695 aa-0.74□□□□□ -2.53
CCDC88A-212ENST00000474059 VPS8Q8N3P4 1428 aa-0.74□□□□□ -2.53
CCDC88A-212ENST00000474059 BAZ1AQ9NRL2 1556 aaPredicted RBP-0.74□□□□□ -2.53
CCDC88A-212ENST00000474059 RGPD8O14715 1765 aaPredicted RBP-0.75□□□□□ -2.53
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms