RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 AEBP2Q6ZN18 517 aaPredicted RBP28.67■■■□□ 2.18
CCDC88A-212ENST00000474059 CHIC1Q5VXU3 224 aa27.07■■□□□ 1.92
CCDC88A-212ENST00000474059 SENP3Q9H4L4 574 aaPredicted RBP24.25■■□□□ 1.47
CCDC88A-212ENST00000474059 PHF23Q9BUL5 403 aaPredicted RBP23.99■■□□□ 1.43
CCDC88A-212ENST00000474059 FOXD1Q16676 465 aa22.74■■□□□ 1.23
CCDC88A-212ENST00000474059 PLPPR3Q6T4P5 718 aa21.5■■□□□ 1.03
CCDC88A-212ENST00000474059 PPP6R1Q9UPN7 881 aa21.3■■□□□ 1
CCDC88A-212ENST00000474059 ADRA2BP18089 450 aa21.16■□□□□ 0.98
CCDC88A-212ENST00000474059 PIAS4Q8N2W9 510 aaPredicted RBP21.13■□□□□ 0.97
CCDC88A-212ENST00000474059 MSH5O43196 834 aa21.12■□□□□ 0.97
CCDC88A-212ENST00000474059 POTEDQ86YR6 584 aa21■□□□□ 0.95
CCDC88A-212ENST00000474059 MAPK8IP2Q13387 824 aaPredicted RBP19.47■□□□□ 0.71
CCDC88A-212ENST00000474059 DMRT2Q9Y5R5 561 aa19.3■□□□□ 0.68
CCDC88A-212ENST00000474059 SCAF1Q9H7N4 1312 aaKnown RBP19.12■□□□□ 0.65
CCDC88A-212ENST00000474059 PPP4R3CPQ6ZMV5 832 aa18.91■□□□□ 0.62
CCDC88A-212ENST00000474059 HOXD11P31277 338 aaPredicted RBP18.59■□□□□ 0.57
CCDC88A-212ENST00000474059 CNKSR2Q8WXI2 1034 aa18.51■□□□□ 0.55
CCDC88A-212ENST00000474059 RNF216Q9NWF9 866 aaPredicted RBP18.37■□□□□ 0.53
CCDC88A-212ENST00000474059 DCAF8L1A6NGE4 600 aa18.34■□□□□ 0.53
CCDC88A-212ENST00000474059 CACNB1Q02641 598 aaPredicted RBP18.14■□□□□ 0.49
CCDC88A-212ENST00000474059 RNF39Q9H2S5 420 aa18.14■□□□□ 0.49
CCDC88A-212ENST00000474059 NCBP3Q53F19 620 aaKnown RBP18.01■□□□□ 0.47
CCDC88A-212ENST00000474059 NPM3O75607 178 aaKnown RBP17.95■□□□□ 0.46
CCDC88A-212ENST00000474059 DNAJC5BQ9UF47 199 aa17.9■□□□□ 0.46
CCDC88A-212ENST00000474059 C1QBPQ07021 282 aaKnown RBP17.78■□□□□ 0.44
CCDC88A-212ENST00000474059 KCNA4P22459 653 aa17.59■□□□□ 0.41
CCDC88A-212ENST00000474059 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.56■□□□□ 0.43e-7■■■□□ 15.7
CCDC88A-212ENST00000474059 U3KPZ7 1027 aaPredicted RBP17.35■□□□□ 0.37
CCDC88A-212ENST00000474059 SLC4A2P04920 1241 aa17.22■□□□□ 0.35
CCDC88A-212ENST00000474059 SPINK5Q9NQ38 1064 aaPredicted RBP17.11■□□□□ 0.33
CCDC88A-212ENST00000474059 DSG3P32926 999 aa16.98■□□□□ 0.31
CCDC88A-212ENST00000474059 CAPN15O75808 1086 aa16.93■□□□□ 0.3
CCDC88A-212ENST00000474059 TRHP20396 242 aaPredicted RBP16.67■□□□□ 0.26
CCDC88A-212ENST00000474059 ABCB7O75027 752 aa16.62■□□□□ 0.25
CCDC88A-212ENST00000474059 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.61■□□□□ 0.25
CCDC88A-212ENST00000474059 HNRNPUL2Q1KMD3 747 aaKnown RBP16.61■□□□□ 0.25
CCDC88A-212ENST00000474059 ZNF219Q9P2Y4 722 aaPredicted RBP16.6■□□□□ 0.25
CCDC88A-212ENST00000474059 APLP2Q06481 763 aa16.58■□□□□ 0.24
CCDC88A-212ENST00000474059 SAMD1Q6SPF0 538 aaPredicted RBP16.57■□□□□ 0.24
CCDC88A-212ENST00000474059 MYCNP04198 464 aaPredicted RBP16.51■□□□□ 0.23
CCDC88A-212ENST00000474059 SLC4A1APQ9BWU0 796 aaKnown RBP16.49■□□□□ 0.23
CCDC88A-212ENST00000474059 FOXD4L1Q9NU39 408 aa16.33■□□□□ 0.2
CCDC88A-212ENST00000474059 POTEHQ6S545 545 aa16.31■□□□□ 0.2
CCDC88A-212ENST00000474059 ATF5Q9Y2D1 282 aaPredicted RBP16.3■□□□□ 0.2
CCDC88A-212ENST00000474059 ZBTB22O15209 634 aa16.27■□□□□ 0.2
CCDC88A-212ENST00000474059 POLA2Q14181 598 aa16.25■□□□□ 0.19
CCDC88A-212ENST00000474059 RBM42Q9BTD8 480 aaKnown RBP16.03■□□□□ 0.16
CCDC88A-212ENST00000474059 ATXN8OSP0DMR3 200 aa15.81■□□□□ 0.12
CCDC88A-212ENST00000474059 ZBTB12Q9Y330 459 aaPredicted RBP15.81■□□□□ 0.12
CCDC88A-212ENST00000474059 CHRDL2Q6WN34 429 aa15.8■□□□□ 0.12
CCDC88A-212ENST00000474059 OSCARQ8IYS5 282 aa15.79■□□□□ 0.12
CCDC88A-212ENST00000474059 AKT1S1Q96B36 256 aa15.73■□□□□ 0.11
CCDC88A-212ENST00000474059 REM2Q8IYK8 340 aaPredicted RBP15.64■□□□□ 0.09
CCDC88A-212ENST00000474059 MKRN4PQ13434 485 aaPredicted RBP15.55■□□□□ 0.08
CCDC88A-212ENST00000474059 PITPNM1O00562 1244 aa15.49■□□□□ 0.07
CCDC88A-212ENST00000474059 PIP4P2Q8N4L2 257 aa15.47■□□□□ 0.07
CCDC88A-212ENST00000474059 CSRNP3Q8WYN3 585 aa15.41■□□□□ 0.06
CCDC88A-212ENST00000474059 SPDYE2BA6NHP3 402 aa15.4■□□□□ 0.06
CCDC88A-212ENST00000474059 SPDYE6P0CI01 402 aa15.4■□□□□ 0.06
CCDC88A-212ENST00000474059 FBLN2P98095 1184 aa15.4■□□□□ 0.06
CCDC88A-212ENST00000474059 SPDYE2Q495Y8 402 aa15.4■□□□□ 0.06
CCDC88A-212ENST00000474059 FXR2P51116 673 aaKnown RBP eCLIP15.37■□□□□ 0.051e-12■■■□□ 16.9
CCDC88A-212ENST00000474059 SSUH2Q9Y2M2 353 aa15.29■□□□□ 0.04
CCDC88A-212ENST00000474059 SP7Q8TDD2 431 aaPredicted RBP15.22■□□□□ 0.03
CCDC88A-212ENST00000474059 ZNF692Q9BU19 519 aaPredicted RBP15.17■□□□□ 0.02
CCDC88A-212ENST00000474059 EVX2Q03828 476 aa15.11■□□□□ 0.01
CCDC88A-212ENST00000474059 SPDYE1Q8NFV5 336 aaPredicted RBP15.1■□□□□ 0.01
CCDC88A-212ENST00000474059 HAX1O00165 279 aa15.07■□□□□ 0
CCDC88A-212ENST00000474059 EHMT2Q96KQ7 1210 aa15.07■□□□□ 0
CCDC88A-212ENST00000474059 CLEC11AQ9Y240 323 aa15.07■□□□□ 0
CCDC88A-212ENST00000474059 PRKAR2AP13861 404 aaKnown RBP15.03■□□□□ -0
CCDC88A-212ENST00000474059 PABPN1Q86U42 306 aaKnown RBP eCLIP15.01□□□□□ -0.01
CCDC88A-212ENST00000474059 CHADLQ6NUI6 762 aa14.9□□□□□ -0.02
CCDC88A-212ENST00000474059 C19orf67A6NJJ6 358 aa14.88□□□□□ -0.03
CCDC88A-212ENST00000474059 PRR29P0C7W0 189 aa14.81□□□□□ -0.04
CCDC88A-212ENST00000474059 GABBR2O75899 941 aa14.65□□□□□ -0.06
CCDC88A-212ENST00000474059 FARP1Q9Y4F1 1045 aaPredicted RBP14.64□□□□□ -0.07
CCDC88A-212ENST00000474059 SPDYE4A6NLX3 237 aa14.63□□□□□ -0.07
CCDC88A-212ENST00000474059 CREBZFQ9NS37 354 aa14.58□□□□□ -0.08
CCDC88A-212ENST00000474059 CD44P16070 742 aaKnown RBP14.54□□□□□ -0.08
CCDC88A-212ENST00000474059 STAG3Q9UJ98 1225 aa14.47□□□□□ -0.09
CCDC88A-212ENST00000474059 POTEIP0CG38 1075 aa14.45□□□□□ -0.1
CCDC88A-212ENST00000474059 PROM2Q8N271 834 aa14.42□□□□□ -0.1
CCDC88A-212ENST00000474059 MNX1P50219 401 aaPredicted RBP14.39□□□□□ -0.11
CCDC88A-212ENST00000474059 ZNF579Q8NAF0 562 aaKnown RBP14.36□□□□□ -0.11
CCDC88A-212ENST00000474059 ZRANB1Q9UGI0 708 aa14.31□□□□□ -0.12
CCDC88A-212ENST00000474059 LHX8Q68G74 356 aa14.25□□□□□ -0.13
CCDC88A-212ENST00000474059 CLCN6P51797 869 aa14.24□□□□□ -0.13
CCDC88A-212ENST00000474059 GALR2O43603 387 aaPredicted RBP14.23□□□□□ -0.13
CCDC88A-212ENST00000474059 PHF12Q96QT6 1004 aa14.2□□□□□ -0.14
CCDC88A-212ENST00000474059 NPM1P06748 294 aaKnown RBP eCLIP14.11□□□□□ -0.15
CCDC88A-212ENST00000474059 DCBLD2Q96PD2 775 aa14.1□□□□□ -0.15
CCDC88A-212ENST00000474059 PAK3O75914 559 aaPredicted RBP14.05□□□□□ -0.16
CCDC88A-212ENST00000474059 PELP1Q8IZL8 1130 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-212ENST00000474059 MS4A3Q96HJ5 214 aa14.01□□□□□ -0.17
CCDC88A-212ENST00000474059 POTEB2H3BUK9 544 aa13.98□□□□□ -0.17
CCDC88A-212ENST00000474059 CCDC61Q9Y6R9 512 aa13.98□□□□□ -0.17
CCDC88A-212ENST00000474059 TSPYL2Q9H2G4 693 aaPredicted RBP13.96□□□□□ -0.17
CCDC88A-212ENST00000474059 RASEFQ8IZ41 740 aa13.91□□□□□ -0.18
CCDC88A-212ENST00000474059 ASTLQ6HA08 431 aaPredicted RBP13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms