RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 TIMM17BO60830 172 aa9.45□□□□□ -0.9
CLK3-215ENST00000564353 C3orf22Q8N5N4 141 aa9.45□□□□□ -0.9
CLK3-215ENST00000564353 ATRQ13535 2644 aa9.45□□□□□ -0.9
CLK3-215ENST00000564353 TRBV6-8A0A0A6YYG3 113 aa9.45□□□□□ -0.9
CLK3-215ENST00000564353 COX7B2Q8TF08 81 aa9.45□□□□□ -0.9
CLK3-215ENST00000564353 PKIGQ9Y2B9 76 aa9.45□□□□□ -0.9
CLK3-215ENST00000564353 A0A1B0GX51 115 aa9.44□□□□□ -0.9
CLK3-215ENST00000564353 GYPEP15421 78 aa9.44□□□□□ -0.9
CLK3-215ENST00000564353 MRAPQ8TCY5 172 aa9.44□□□□□ -0.9
CLK3-215ENST00000564353 IGLV10-54A0A075B6I4 117 aa9.43□□□□□ -0.9
CLK3-215ENST00000564353 TRBV6-4A0A1B0GX49 114 aa9.43□□□□□ -0.9
CLK3-215ENST00000564353 LINC00337Q8N6G1 96 aa9.43□□□□□ -0.9
CLK3-215ENST00000564353 SEC61GP60059 68 aa9.42□□□□□ -0.9
CLK3-215ENST00000564353 GAGE2AQ6NT46 116 aa9.42□□□□□ -0.9
CLK3-215ENST00000564353 SND1-IT1Q9HBX3 110 aa9.42□□□□□ -0.9
CLK3-215ENST00000564353 ATP5G1P05496 136 aa9.41□□□□□ -0.9
CLK3-215ENST00000564353 COX7A2LO14548 114 aa9.41□□□□□ -0.9
CLK3-215ENST00000564353 DEFB135Q30KP9 77 aa9.41□□□□□ -0.9
CLK3-215ENST00000564353 IGKV2-28A0A075B6P5 120 aa9.4□□□□□ -0.9
CLK3-215ENST00000564353 OXTP01178 125 aa9.4□□□□□ -0.9
CLK3-215ENST00000564353 IGKV2D-28P01615 120 aa9.4□□□□□ -0.9
CLK3-215ENST00000564353 PRR3P79522 188 aaKnown RBP9.4□□□□□ -0.9
CLK3-215ENST00000564353 H3BT86 120 aa9.4□□□□□ -0.91
CLK3-215ENST00000564353 UQCRQO14949 82 aa9.4□□□□□ -0.91
CLK3-215ENST00000564353 DSCR8Q96T75 97 aa9.4□□□□□ -0.91
CLK3-215ENST00000564353 OVOL2Q9BRP0 275 aa9.4□□□□□ -0.91
CLK3-215ENST00000564353 IGHV3OR16-9A0A0B4J2B5 98 aa9.39□□□□□ -0.91
CLK3-215ENST00000564353 HTN3P15516 51 aa9.39□□□□□ -0.91
CLK3-215ENST00000564353 HILS1P60008 231 aa9.39□□□□□ -0.91
CLK3-215ENST00000564353 C16orf95Q9H693 158 aa9.39□□□□□ -0.91
CLK3-215ENST00000564353 HIVEP1P15822 2718 aa9.39□□□□□ -0.91
CLK3-215ENST00000564353 PAX4O43316 350 aa9.39□□□□□ -0.91
CLK3-215ENST00000564353 CRPP02741 224 aa9.39□□□□□ -0.91
CLK3-215ENST00000564353 C6orf226Q5I0X4 101 aa9.39□□□□□ -0.91
CLK3-215ENST00000564353 hADV29S1A0JD25 119 aa9.38□□□□□ -0.91
CLK3-215ENST00000564353 BAALC-AS2P0C853 105 aa9.38□□□□□ -0.91
CLK3-215ENST00000564353 CCL18P55774 89 aa9.38□□□□□ -0.91
CLK3-215ENST00000564353 FAM222AQ5U5X8 452 aa9.38□□□□□ -0.91
CLK3-215ENST00000564353 LINC00526Q96FQ7 95 aa9.38□□□□□ -0.91
CLK3-215ENST00000564353 LINC00959A0A1B0GUT2 108 aa9.38□□□□□ -0.91
CLK3-215ENST00000564353 CYSTM1Q9H1C7 97 aa9.38□□□□□ -0.91
CLK3-215ENST00000564353 A0A087WYN8 130 aa9.37□□□□□ -0.91
CLK3-215ENST00000564353 SLPIP03973 132 aa9.37□□□□□ -0.91
CLK3-215ENST00000564353 FAM19A3Q7Z5A8 133 aa9.37□□□□□ -0.91
CLK3-215ENST00000564353 RPS28P62857 69 aaKnown RBP9.37□□□□□ -0.91
CLK3-215ENST00000564353 C9orf129Q5T035 196 aaKnown RBP9.37□□□□□ -0.91
CLK3-215ENST00000564353 Q5XG85 94 aa9.37□□□□□ -0.91
CLK3-215ENST00000564353 SMIM11BQ8TCY0 68 aa9.37□□□□□ -0.91
CLK3-215ENST00000564353 X6R8D5 127 aa9.36□□□□□ -0.91
CLK3-215ENST00000564353 LY6G6DO95868 133 aa9.36□□□□□ -0.91
CLK3-215ENST00000564353 C9orf116Q5BN46 136 aaPredicted RBP9.36□□□□□ -0.91
CLK3-215ENST00000564353 LINC00269Q8N2A0 174 aa9.36□□□□□ -0.91
CLK3-215ENST00000564353 NSD1Q96L73 2696 aaPredicted RBP9.36□□□□□ -0.91
CLK3-215ENST00000564353 INAFM1C9JVW0 142 aa9.35□□□□□ -0.91
CLK3-215ENST00000564353 DPH3Q96FX2 82 aa9.35□□□□□ -0.91
CLK3-215ENST00000564353 CMC4P56277 68 aaPredicted RBP9.35□□□□□ -0.91
CLK3-215ENST00000564353 FLNBO75369 2602 aaKnown RBP9.34□□□□□ -0.91
CLK3-215ENST00000564353 TEP1Q99973 2627 aaKnown RBP9.34□□□□□ -0.91
CLK3-215ENST00000564353 A0A087WZ39 114 aa9.33□□□□□ -0.92
CLK3-215ENST00000564353 SMCR5Q8TEV8 140 aa9.33□□□□□ -0.92
CLK3-215ENST00000564353 C22orf24Q9Y442 160 aa9.33□□□□□ -0.92
CLK3-215ENST00000564353 TRBV7-7A0A0K0K1E9 115 aa9.33□□□□□ -0.92
CLK3-215ENST00000564353 PKD1L1Q8TDX9 2849 aa9.32□□□□□ -0.92
CLK3-215ENST00000564353 ANGP03950 147 aaKnown RBP9.32□□□□□ -0.92
CLK3-215ENST00000564353 LINC00336Q6ZUF6 198 aa9.32□□□□□ -0.92
CLK3-215ENST00000564353 COPS9Q8WXC6 57 aa9.32□□□□□ -0.92
CLK3-215ENST00000564353 CELA1Q9UNI1 258 aa9.32□□□□□ -0.92
CLK3-215ENST00000564353 TRAV13-2A0A0B4J235 113 aa9.32□□□□□ -0.92
CLK3-215ENST00000564353 LECT2O14960 151 aa9.32□□□□□ -0.92
CLK3-215ENST00000564353 TRACP01848 142 aa9.31□□□□□ -0.92
CLK3-215ENST00000564353 MALP21145 153 aa9.31□□□□□ -0.92
CLK3-215ENST00000564353 PRO0628Q9UI54 55 aa9.31□□□□□ -0.92
CLK3-215ENST00000564353 DNAL4O96015 105 aa9.3□□□□□ -0.92
CLK3-215ENST00000564353 COX7CP15954 63 aa9.3□□□□□ -0.92
CLK3-215ENST00000564353 SS18Q15532 418 aa9.3□□□□□ -0.92
CLK3-215ENST00000564353 C14orf132Q9NPU4 83 aa9.3□□□□□ -0.92
CLK3-215ENST00000564353 PRO0255Q9UI72 69 aa9.3□□□□□ -0.92
CLK3-215ENST00000564353 IGHV4-28A0A0C4DH34 117 aa9.28□□□□□ -0.92
CLK3-215ENST00000564353 RPL28P46779 137 aaKnown RBP9.28□□□□□ -0.92
CLK3-215ENST00000564353 LINC01600Q96MT4 127 aa9.28□□□□□ -0.92
CLK3-215ENST00000564353 NCR3O14931 201 aa9.28□□□□□ -0.92
CLK3-215ENST00000564353 C6orf223Q8N319 242 aa9.28□□□□□ -0.92
CLK3-215ENST00000564353 V9GYY9 64 aa9.28□□□□□ -0.92
CLK3-215ENST00000564353 FAM236DA0A1B0GTK5 79 aa9.27□□□□□ -0.92
CLK3-215ENST00000564353 IBA57-AS1B1ANH7 110 aa9.27□□□□□ -0.92
CLK3-215ENST00000564353 FAM236CP0DP71 79 aa9.27□□□□□ -0.92
CLK3-215ENST00000564353 CHCHD10Q8WYQ3 142 aaPredicted RBP9.27□□□□□ -0.93
CLK3-215ENST00000564353 CRYGAP11844 174 aa9.27□□□□□ -0.93
CLK3-215ENST00000564353 DAD1P61803 113 aa9.27□□□□□ -0.93
CLK3-215ENST00000564353 DEFB121Q5J5C9 76 aa9.26□□□□□ -0.93
CLK3-215ENST00000564353 A0A0U1RQV1 116 aa9.25□□□□□ -0.93
CLK3-215ENST00000564353 REG3AQ06141 175 aa9.25□□□□□ -0.93
CLK3-215ENST00000564353 C2orf48Q96LS8 159 aa9.25□□□□□ -0.93
CLK3-215ENST00000564353 Q8NDZ9 215 aa9.25□□□□□ -0.93
CLK3-215ENST00000564353 C10orf25Q5T742 122 aa9.24□□□□□ -0.93
CLK3-215ENST00000564353 LINC00612Q8N6U2 182 aa9.23□□□□□ -0.93
CLK3-215ENST00000564353 TMEM258P61165 79 aa9.23□□□□□ -0.93
CLK3-215ENST00000564353 KLK12Q9UKR0 248 aa9.23□□□□□ -0.93
CLK3-215ENST00000564353 FAM240AA0A1B0GVK7 77 aa9.22□□□□□ -0.93
CLK3-215ENST00000564353 UNQ6190/PRO20217Q6UXQ8 127 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms