RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 CDKN2A-AS1Q9UH64 79 aa9.45□□□□□ -0.9
CPSF1-211ENST00000533492 TNXBP22105 4242 aa9.45□□□□□ -0.9
CPSF1-211ENST00000533492 M0QXV9 152 aa9.44□□□□□ -0.9
CPSF1-211ENST00000533492 ERASQ7Z444 233 aa9.44□□□□□ -0.9
CPSF1-211ENST00000533492 GNB1LQ9BYB4 327 aa9.44□□□□□ -0.9
CPSF1-211ENST00000533492 COX19Q49B96 90 aa9.43□□□□□ -0.9
CPSF1-211ENST00000533492 C9orf129Q5T035 196 aaKnown RBP9.43□□□□□ -0.9
CPSF1-211ENST00000533492 LINC01549A6NIU2 74 aa9.42□□□□□ -0.9
CPSF1-211ENST00000533492 KRTAP11-1Q8IUC1 163 aa9.42□□□□□ -0.9
CPSF1-211ENST00000533492 KRTAP7-1Q8IUC3 87 aa9.42□□□□□ -0.9
CPSF1-211ENST00000533492 UBR4Q5T4S7 5183 aa9.41□□□□□ -0.9
CPSF1-211ENST00000533492 COMMD7Q86VX2 200 aa9.41□□□□□ -0.9
CPSF1-211ENST00000533492 LINC00469Q8N7U9 141 aa9.41□□□□□ -0.9
CPSF1-211ENST00000533492 F8VRH5 84 aa9.4□□□□□ -0.9
CPSF1-211ENST00000533492 FABP9Q0Z7S8 132 aa9.4□□□□□ -0.9
CPSF1-211ENST00000533492 FA2HQ7L5A8 372 aa9.4□□□□□ -0.9
CPSF1-211ENST00000533492 SMCO4Q9NRQ5 59 aa9.4□□□□□ -0.9
CPSF1-211ENST00000533492 TINCRA0A1B0GVN0 87 aa9.39□□□□□ -0.91
CPSF1-211ENST00000533492 H0Y9J4 135 aa9.39□□□□□ -0.91
CPSF1-211ENST00000533492 CXCL5P42830 114 aa9.39□□□□□ -0.91
CPSF1-211ENST00000533492 MRPL18Q9H0U6 180 aaKnown RBP9.39□□□□□ -0.91
CPSF1-211ENST00000533492 RPS10P5Q9NQ39 176 aa9.39□□□□□ -0.91
CPSF1-211ENST00000533492 LINC01546A6NGU7 62 aa9.38□□□□□ -0.91
CPSF1-211ENST00000533492 XAGE1AQ9HD64 81 aa9.38□□□□□ -0.91
CPSF1-211ENST00000533492 RHEBQ15382 184 aa9.37□□□□□ -0.91
CPSF1-211ENST00000533492 LBHQ53QV2 105 aaPredicted RBP9.37□□□□□ -0.91
CPSF1-211ENST00000533492 PDZD11Q5EBL8 140 aa9.37□□□□□ -0.91
CPSF1-211ENST00000533492 CST9LQ9H4G1 147 aa9.37□□□□□ -0.91
CPSF1-211ENST00000533492 C22orf24Q9Y442 160 aa9.37□□□□□ -0.91
CPSF1-211ENST00000533492 SMIM1B2RUZ4 78 aa9.36□□□□□ -0.91
CPSF1-211ENST00000533492 PMVKQ15126 192 aa9.36□□□□□ -0.91
CPSF1-211ENST00000533492 PRR26Q8N8Z3 221 aa9.36□□□□□ -0.91
CPSF1-211ENST00000533492 COX7B2Q8TF08 81 aa9.36□□□□□ -0.91
CPSF1-211ENST00000533492 C10orf91Q5T1B1 145 aa9.35□□□□□ -0.91
CPSF1-211ENST00000533492 IGLV5-45A0A087WSX0 123 aa9.34□□□□□ -0.91
CPSF1-211ENST00000533492 CARHSP1Q9Y2V2 147 aaKnown RBP9.34□□□□□ -0.91
CPSF1-211ENST00000533492 H3BRM9 83 aa9.33□□□□□ -0.92
CPSF1-211ENST00000533492 SPINK8P0C7L1 97 aa9.33□□□□□ -0.92
CPSF1-211ENST00000533492 NDUFA6P56556 154 aa9.33□□□□□ -0.92
CPSF1-211ENST00000533492 IGLV1-50A0A075B6I6 118 aa9.32□□□□□ -0.92
CPSF1-211ENST00000533492 NUPR1O60356 82 aa9.32□□□□□ -0.92
CPSF1-211ENST00000533492 RAB5BP61020 215 aa9.32□□□□□ -0.92
CPSF1-211ENST00000533492 TRAPPC1Q9Y5R8 145 aa9.32□□□□□ -0.92
CPSF1-211ENST00000533492 ZNF861PO60384 105 aa9.31□□□□□ -0.92
CPSF1-211ENST00000533492 MRPL55Q7Z7F7 128 aaKnown RBP9.31□□□□□ -0.92
CPSF1-211ENST00000533492 TP73-AS1Q9UF72 201 aa9.31□□□□□ -0.92
CPSF1-211ENST00000533492 LINC00614P0C842 121 aa9.3□□□□□ -0.92
CPSF1-211ENST00000533492 LRP2P98164 4655 aa9.29□□□□□ -0.92
CPSF1-211ENST00000533492 ATP5LO75964 103 aa9.29□□□□□ -0.92
CPSF1-211ENST00000533492 KRTAP1-4P0C5Y4 121 aa9.29□□□□□ -0.92
CPSF1-211ENST00000533492 APOC3P02656 99 aa9.28□□□□□ -0.92
CPSF1-211ENST00000533492 IGLC3P0DOY3 106 aa9.28□□□□□ -0.92
CPSF1-211ENST00000533492 C18orf32Q8TCD1 76 aa9.28□□□□□ -0.92
CPSF1-211ENST00000533492 HBDP02042 147 aa9.27□□□□□ -0.93
CPSF1-211ENST00000533492 RPL13AP40429 203 aaKnown RBP9.27□□□□□ -0.93
CPSF1-211ENST00000533492 NDUFA5Q16718 116 aa9.27□□□□□ -0.93
CPSF1-211ENST00000533492 LINC00167Q96N53 147 aa9.27□□□□□ -0.93
CPSF1-211ENST00000533492 A0A096LNJ9 63 aa9.26□□□□□ -0.93
CPSF1-211ENST00000533492 RPL37AP8A6NKH3 93 aa9.26□□□□□ -0.93
CPSF1-211ENST00000533492 RPL28P46779 137 aaKnown RBP9.26□□□□□ -0.93
CPSF1-211ENST00000533492 NKAPP1Q8N9T2 125 aa9.26□□□□□ -0.93
CPSF1-211ENST00000533492 URB1-AS1Q96HZ7 61 aa9.26□□□□□ -0.93
CPSF1-211ENST00000533492 GAGE10A6NGK3 116 aa9.25□□□□□ -0.93
CPSF1-211ENST00000533492 BCE1O60756 84 aa9.25□□□□□ -0.93
CPSF1-211ENST00000533492 SNAPINO95295 136 aa9.25□□□□□ -0.93
CPSF1-211ENST00000533492 PFN2P35080 140 aa9.25□□□□□ -0.93
CPSF1-211ENST00000533492 PMCHL1Q16048 86 aa9.25□□□□□ -0.93
CPSF1-211ENST00000533492 SVBPQ8N300 66 aa9.25□□□□□ -0.93
CPSF1-211ENST00000533492 ZNF22P17026 224 aaPredicted RBP9.24□□□□□ -0.93
CPSF1-211ENST00000533492 BAGE3Q86Y29 109 aa9.24□□□□□ -0.93
CPSF1-211ENST00000533492 IGLV5-39A0A0G2JS06 123 aa9.23□□□□□ -0.93
CPSF1-211ENST00000533492 IGLV5-37A0A075B6J1 123 aa9.22□□□□□ -0.93
CPSF1-211ENST00000533492 TMEM170BQ5T4T1 132 aa9.22□□□□□ -0.93
CPSF1-211ENST00000533492 ERG28Q9UKR5 140 aa9.21□□□□□ -0.94
CPSF1-211ENST00000533492 UBE2AP49459 152 aa9.2□□□□□ -0.94
CPSF1-211ENST00000533492 COX17Q14061 63 aa9.2□□□□□ -0.94
CPSF1-211ENST00000533492 ZNF625Q96I27 306 aaPredicted RBP9.2□□□□□ -0.94
CPSF1-211ENST00000533492 C11orf86A6NJI1 115 aa9.19□□□□□ -0.94
CPSF1-211ENST00000533492 SFTA2Q6UW10 78 aa9.19□□□□□ -0.94
CPSF1-211ENST00000533492 CHTOPQ9Y3Y2 248 aaKnown RBP9.19□□□□□ -0.94
CPSF1-211ENST00000533492 IGKV2-28A0A075B6P5 120 aa9.18□□□□□ -0.94
CPSF1-211ENST00000533492 SCO1O75880 301 aa9.18□□□□□ -0.94
CPSF1-211ENST00000533492 IGKV2D-28P01615 120 aa9.18□□□□□ -0.94
CPSF1-211ENST00000533492 RPL24P83731 157 aaKnown RBP9.18□□□□□ -0.94
CPSF1-211ENST00000533492 SND1-IT1Q9HBX3 110 aa9.18□□□□□ -0.94
CPSF1-211ENST00000533492 CRYGAP11844 174 aa9.17□□□□□ -0.94
CPSF1-211ENST00000533492 PRR4Q16378 134 aa9.16□□□□□ -0.94
CPSF1-211ENST00000533492 CHCHD1Q96BP2 118 aaKnown RBP9.16□□□□□ -0.94
CPSF1-211ENST00000533492 RNF213Q63HN8 5207 aa9.15□□□□□ -0.94
CPSF1-211ENST00000533492 VPREB1P12018 145 aa9.15□□□□□ -0.94
CPSF1-211ENST00000533492 TYMSOSQ8TAI1 123 aa9.15□□□□□ -0.94
CPSF1-211ENST00000533492 IFI27L1Q96BM0 104 aa9.15□□□□□ -0.94
CPSF1-211ENST00000533492 A0A087X002 238 aa9.14□□□□□ -0.95
CPSF1-211ENST00000533492 TSPAN13O95857 204 aa9.14□□□□□ -0.95
CPSF1-211ENST00000533492 LINC00158P58513 81 aa9.14□□□□□ -0.95
CPSF1-211ENST00000533492 TRAV12-1A0A0B4J245 112 aa9.13□□□□□ -0.95
CPSF1-211ENST00000533492 FAM19A1Q7Z5A9 133 aa9.13□□□□□ -0.95
CPSF1-211ENST00000533492 KRTAP13-1Q8IUC0 172 aa9.13□□□□□ -0.95
CPSF1-211ENST00000533492 YPEL4Q96NS1 127 aa9.13□□□□□ -0.95
CPSF1-211ENST00000533492 TMEM223A0PJW6 202 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms