RNA–Protein interactions for RNA: ENST00000491142.1

HPS4-215, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 486 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-215ENST00000491142 GAGE13Q4V321 117 aa5.93□□□□□ -1.46
HPS4-215ENST00000491142 DGAT2L7PQ6IED9 249 aa5.93□□□□□ -1.46
HPS4-215ENST00000491142 VSIG2Q96IQ7 327 aa5.93□□□□□ -1.46
HPS4-215ENST00000491142 TMEM243Q9BU79 118 aa5.93□□□□□ -1.46
HPS4-215ENST00000491142 LYRM9A8MSI8 78 aa5.92□□□□□ -1.46
HPS4-215ENST00000491142 TMEM238C9JI98 176 aa5.92□□□□□ -1.46
HPS4-215ENST00000491142 HERVK_113P63121 156 aa5.92□□□□□ -1.46
HPS4-215ENST00000491142 RNASE13Q5GAN3 156 aaKnown RBP5.92□□□□□ -1.46
HPS4-215ENST00000491142 GEMIN7Q9H840 131 aaKnown RBP5.92□□□□□ -1.46
HPS4-215ENST00000491142 CDC42SE2Q9NRR3 84 aa5.92□□□□□ -1.46
HPS4-215ENST00000491142 SPCS1Q9Y6A9 102 aa5.92□□□□□ -1.46
HPS4-215ENST00000491142 A0A0J9YXY3 114 aa5.91□□□□□ -1.46
HPS4-215ENST00000491142 TIMM17BO60830 172 aa5.91□□□□□ -1.46
HPS4-215ENST00000491142 FAM222AQ5U5X8 452 aa5.91□□□□□ -1.46
HPS4-215ENST00000491142 C6orf223Q8N319 242 aa5.91□□□□□ -1.46
HPS4-215ENST00000491142 C10orf126Q8N4M7 172 aa5.91□□□□□ -1.46
HPS4-215ENST00000491142 NAA38Q9BRA0 125 aaKnown RBP5.91□□□□□ -1.46
HPS4-215ENST00000491142 SPANXDQ9BXN6 97 aa5.91□□□□□ -1.46
HPS4-215ENST00000491142 SPANXCQ9NY87 97 aa5.91□□□□□ -1.46
HPS4-215ENST00000491142 DMBT1Q9UGM3 2413 aaPredicted RBP5.91□□□□□ -1.46
HPS4-215ENST00000491142 UBR4Q5T4S7 5183 aa5.91□□□□□ -1.46
HPS4-215ENST00000491142 IGHV3-64A0A075B6Q5 118 aa5.9□□□□□ -1.46
HPS4-215ENST00000491142 TRAV8-3A0A0A6YYJ7 113 aa5.9□□□□□ -1.46
HPS4-215ENST00000491142 IGLV5-39A0A0G2JS06 123 aa5.9□□□□□ -1.46
HPS4-215ENST00000491142 LOC100131303A0A0U1RQF7 123 aa5.9□□□□□ -1.46
HPS4-215ENST00000491142 NBDYA0A0U1RRE5 68 aa5.9□□□□□ -1.46
HPS4-215ENST00000491142 UBE2L6O14933 153 aa5.9□□□□□ -1.46
HPS4-215ENST00000491142 LINC00242Q5T6M2 205 aa5.9□□□□□ -1.46
HPS4-215ENST00000491142 TMEM101Q96IK0 257 aa5.9□□□□□ -1.46
HPS4-215ENST00000491142 LITAFQ99732 161 aa5.9□□□□□ -1.46
HPS4-215ENST00000491142 CDKN2A-AS1Q9UH64 79 aa5.9□□□□□ -1.46
HPS4-215ENST00000491142 TRBV6-8A0A0A6YYG3 113 aa5.89□□□□□ -1.47
HPS4-215ENST00000491142 A0A0B4J2C4 111 aa5.89□□□□□ -1.47
HPS4-215ENST00000491142 EPM2AB3EWF7 344 aa5.89□□□□□ -1.47
HPS4-215ENST00000491142 NDUFA1O15239 70 aa5.89□□□□□ -1.47
HPS4-215ENST00000491142 SPINK8P0C7L1 97 aa5.89□□□□□ -1.47
HPS4-215ENST00000491142 INAFM2P0DMQ5 153 aa5.89□□□□□ -1.47
HPS4-215ENST00000491142 KRTAP10-2P60368 255 aa5.89□□□□□ -1.47
HPS4-215ENST00000491142 RPL24P83731 157 aaKnown RBP5.89□□□□□ -1.47
HPS4-215ENST00000491142 COX6A2Q02221 97 aa5.89□□□□□ -1.47
HPS4-215ENST00000491142 NDUFA12Q9UI09 145 aa5.89□□□□□ -1.47
HPS4-215ENST00000491142 CFC1BP0CG36 223 aa5.88□□□□□ -1.47
HPS4-215ENST00000491142 CFC1P0CG37 223 aa5.88□□□□□ -1.47
HPS4-215ENST00000491142 PRO0255Q9UI72 69 aa5.88□□□□□ -1.47
HPS4-215ENST00000491142 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.87□□□□□ -1.47
HPS4-215ENST00000491142 SMIM1B2RUZ4 78 aa5.87□□□□□ -1.47
HPS4-215ENST00000491142 F5H768 121 aa5.87□□□□□ -1.47
HPS4-215ENST00000491142 TSPAN13O95857 204 aa5.87□□□□□ -1.47
HPS4-215ENST00000491142 DEFB130BP0DP73 79 aa5.87□□□□□ -1.47
HPS4-215ENST00000491142 DEFB130AP0DP74 79 aa5.87□□□□□ -1.47
HPS4-215ENST00000491142 MIAQ16674 131 aa5.87□□□□□ -1.47
HPS4-215ENST00000491142 LYRM7Q5U5X0 104 aa5.87□□□□□ -1.47
HPS4-215ENST00000491142 MUSTN1Q8IVN3 82 aa5.87□□□□□ -1.47
HPS4-215ENST00000491142 C15orf53Q8NAA6 179 aa5.87□□□□□ -1.47
HPS4-215ENST00000491142 ATP6V0E2Q8NHE4 81 aa5.87□□□□□ -1.47
HPS4-215ENST00000491142 TEX48A0A1B0GUV7 120 aa5.86□□□□□ -1.47
HPS4-215ENST00000491142 A4D1N5 150 aa5.86□□□□□ -1.47
HPS4-215ENST00000491142 APOMO95445 188 aa5.86□□□□□ -1.47
HPS4-215ENST00000491142 IFITM1P13164 125 aa5.86□□□□□ -1.47
HPS4-215ENST00000491142 GYPEP15421 78 aa5.86□□□□□ -1.47
HPS4-215ENST00000491142 DAD1P61803 113 aa5.86□□□□□ -1.47
HPS4-215ENST00000491142 CDIP1Q9H305 208 aa5.86□□□□□ -1.47
HPS4-215ENST00000491142 PPDPFQ9H3Y8 114 aa5.86□□□□□ -1.47
HPS4-215ENST00000491142 PRO1854Q9UHT4 67 aa5.86□□□□□ -1.47
HPS4-215ENST00000491142 HMCN2Q8NDA2 5059 aa5.86□□□□□ -1.47
HPS4-215ENST00000491142 TRAV13-1A0A0B4J241 112 aa5.85□□□□□ -1.47
HPS4-215ENST00000491142 A0A1B0GUV1 79 aa5.85□□□□□ -1.47
HPS4-215ENST00000491142 F8W1H4 67 aa5.85□□□□□ -1.47
HPS4-215ENST00000491142 IGHV3-33P01772 117 aa5.85□□□□□ -1.47
HPS4-215ENST00000491142 HERV-K104P63124 156 aa5.85□□□□□ -1.47
HPS4-215ENST00000491142 GAGE6Q13070 117 aa5.85□□□□□ -1.47
HPS4-215ENST00000491142 OCIAD2Q56VL3 154 aa5.85□□□□□ -1.47
HPS4-215ENST00000491142 LINC00588Q9Y4M8 146 aa5.85□□□□□ -1.47
HPS4-215ENST00000491142 IGLV4-60A0A075B6I1 120 aa5.84□□□□□ -1.47
HPS4-215ENST00000491142 TRAV26-1A0A087WT03 109 aa5.84□□□□□ -1.47
HPS4-215ENST00000491142 FUSP35637 526 aaKnown RBP eCLIP5.84□□□□□ -1.47
HPS4-215ENST00000491142 CIRBPQ14011 172 aaKnown RBP5.84□□□□□ -1.47
HPS4-215ENST00000491142 ADAMTSL4-AS1Q5T5F5 129 aa5.84□□□□□ -1.47
HPS4-215ENST00000491142 ZNF625Q96I27 306 aaPredicted RBP5.84□□□□□ -1.47
HPS4-215ENST00000491142 CHCHD5Q9BSY4 110 aa5.84□□□□□ -1.47
HPS4-215ENST00000491142 KRTAP1-5Q9BYS1 174 aa5.84□□□□□ -1.47
HPS4-215ENST00000491142 SRRM2Q9UQ35 2752 aaKnown RBP5.84□□□□□ -1.47
HPS4-215ENST00000491142 TRBV20-1A0A075B6N2 111 aa5.83□□□□□ -1.48
HPS4-215ENST00000491142 H3BS24 57 aa5.83□□□□□ -1.48
HPS4-215ENST00000491142 K7ERU9 68 aa5.83□□□□□ -1.48
HPS4-215ENST00000491142 ATP5G1P05496 136 aa5.83□□□□□ -1.48
HPS4-215ENST00000491142 CCL18P55774 89 aa5.83□□□□□ -1.48
HPS4-215ENST00000491142 XGP55808 180 aa5.83□□□□□ -1.48
HPS4-215ENST00000491142 Q5VSD8 79 aa5.83□□□□□ -1.48
HPS4-215ENST00000491142 LINC01561Q8N1V8 128 aa5.83□□□□□ -1.48
HPS4-215ENST00000491142 COPS9Q8WXC6 57 aa5.83□□□□□ -1.48
HPS4-215ENST00000491142 Q9H8V8 135 aa5.83□□□□□ -1.48
HPS4-215ENST00000491142 PRO0461Q9UI25 63 aa5.83□□□□□ -1.48
HPS4-215ENST00000491142 DNAH8Q96JB1 4490 aa5.82□□□□□ -1.48
HPS4-215ENST00000491142 IGHV3OR16-9A0A0B4J2B5 98 aa5.82□□□□□ -1.48
HPS4-215ENST00000491142 H3BMG7 143 aa5.82□□□□□ -1.48
HPS4-215ENST00000491142 RBX1P62877 108 aa5.82□□□□□ -1.48
HPS4-215ENST00000491142 ERG28Q9UKR5 140 aa5.82□□□□□ -1.48
HPS4-215ENST00000491142 A0A087WZ39 114 aa5.81□□□□□ -1.48
HPS4-215ENST00000491142 LOC107984156A0A0G2JMH3 177 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms