RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 PACRGQ96M98 296 aaPredicted RBP4.38□□□□□ -1.71
COL9A1-209ENST00000489861 KRTAP4-11Q9BYQ6 195 aa4.38□□□□□ -1.71
COL9A1-209ENST00000489861 USH2AO75445 5202 aa4.38□□□□□ -1.71
COL9A1-209ENST00000489861 PRSS2P07478 247 aa4.37□□□□□ -1.71
COL9A1-209ENST00000489861 TLX1NBP0CAT3 122 aa4.37□□□□□ -1.71
COL9A1-209ENST00000489861 RPL13AP40429 203 aaKnown RBP4.37□□□□□ -1.71
COL9A1-209ENST00000489861 RPL39P62891 51 aaKnown RBP4.37□□□□□ -1.71
COL9A1-209ENST00000489861 C9orf116Q5BN46 136 aaPredicted RBP4.37□□□□□ -1.71
COL9A1-209ENST00000489861 RNASE13Q5GAN3 156 aaKnown RBP4.37□□□□□ -1.71
COL9A1-209ENST00000489861 CLLU1Q5K131 121 aa4.37□□□□□ -1.71
COL9A1-209ENST00000489861 Q8N8P6 123 aa4.37□□□□□ -1.71
COL9A1-209ENST00000489861 VCX2Q9H322 139 aa4.37□□□□□ -1.71
COL9A1-209ENST00000489861 SYNE2Q8WXH0 6885 aaKnown RBP4.37□□□□□ -1.71
COL9A1-209ENST00000489861 IGLV1-50A0A075B6I6 118 aa4.36□□□□□ -1.71
COL9A1-209ENST00000489861 A0A087WZ39 114 aa4.36□□□□□ -1.71
COL9A1-209ENST00000489861 IGHV3OR16-9A0A0B4J2B5 98 aa4.36□□□□□ -1.71
COL9A1-209ENST00000489861 TRBV30A0A0K0K1B3 111 aa4.36□□□□□ -1.71
COL9A1-209ENST00000489861 UBE2D1P51668 147 aa4.36□□□□□ -1.71
COL9A1-209ENST00000489861 UBE2BP63146 152 aa4.36□□□□□ -1.71
COL9A1-209ENST00000489861 C1orf137Q5JT78 98 aa4.36□□□□□ -1.71
COL9A1-209ENST00000489861 LCE4AQ5TA78 99 aa4.36□□□□□ -1.71
COL9A1-209ENST00000489861 KRTAP4-1Q9BYQ7 146 aa4.36□□□□□ -1.71
COL9A1-209ENST00000489861 IGLV4-3A0A075B6K6 122 aa4.35□□□□□ -1.71
COL9A1-209ENST00000489861 LOC389332A0A1B0GUA5 103 aa4.35□□□□□ -1.71
COL9A1-209ENST00000489861 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.35□□□□□ -1.71
COL9A1-209ENST00000489861 CKS1BP61024 79 aa4.35□□□□□ -1.71
COL9A1-209ENST00000489861 HERVK_113P63121 156 aa4.35□□□□□ -1.71
COL9A1-209ENST00000489861 C2orf66Q6UXQ4 117 aa4.35□□□□□ -1.71
COL9A1-209ENST00000489861 LINC00526Q96FQ7 95 aa4.35□□□□□ -1.71
COL9A1-209ENST00000489861 NUPR1O60356 82 aa4.34□□□□□ -1.71
COL9A1-209ENST00000489861 IGLV7-43P04211 117 aa4.34□□□□□ -1.71
COL9A1-209ENST00000489861 CXCL5P42830 114 aa4.34□□□□□ -1.71
COL9A1-209ENST00000489861 TIMM17AQ99595 171 aa4.34□□□□□ -1.71
COL9A1-209ENST00000489861 SEC11CQ9BY50 192 aa4.34□□□□□ -1.71
COL9A1-209ENST00000489861 GEMIN7Q9H840 131 aaKnown RBP4.34□□□□□ -1.71
COL9A1-209ENST00000489861 MACF1Q9UPN3 7388 aaKnown RBP4.33□□□□□ -1.72
COL9A1-209ENST00000489861 A0A1W2PNN7 141 aa4.33□□□□□ -1.72
COL9A1-209ENST00000489861 TMEM218A2RU14 115 aa4.33□□□□□ -1.72
COL9A1-209ENST00000489861 NDUFC2-KCTD14E9PQ53 114 aa4.33□□□□□ -1.72
COL9A1-209ENST00000489861 H0Y9J4 135 aa4.33□□□□□ -1.72
COL9A1-209ENST00000489861 M0QXV9 152 aa4.33□□□□□ -1.72
COL9A1-209ENST00000489861 TSPAN13O95857 204 aa4.33□□□□□ -1.72
COL9A1-209ENST00000489861 LBHQ53QV2 105 aaPredicted RBP4.33□□□□□ -1.72
COL9A1-209ENST00000489861 C6orf226Q5I0X4 101 aa4.33□□□□□ -1.72
COL9A1-209ENST00000489861 LINC00242Q5T6M2 205 aa4.33□□□□□ -1.72
COL9A1-209ENST00000489861 FAM19A3Q7Z5A8 133 aa4.33□□□□□ -1.72
COL9A1-209ENST00000489861 AMELXQ99217 191 aa4.33□□□□□ -1.72
COL9A1-209ENST00000489861 GNB1LQ9BYB4 327 aa4.33□□□□□ -1.72
COL9A1-209ENST00000489861 SMCO4Q9NRQ5 59 aa4.33□□□□□ -1.72
COL9A1-209ENST00000489861 KRTAP1-4P0C5Y4 121 aa4.32□□□□□ -1.72
COL9A1-209ENST00000489861 RHEBQ15382 184 aa4.32□□□□□ -1.72
COL9A1-209ENST00000489861 PHF5AQ7RTV0 110 aaKnown RBP4.32□□□□□ -1.72
COL9A1-209ENST00000489861 ERASQ7Z444 233 aa4.32□□□□□ -1.72
COL9A1-209ENST00000489861 Q8IZM0 81 aa4.32□□□□□ -1.72
COL9A1-209ENST00000489861 TOMM6Q96B49 74 aa4.32□□□□□ -1.72
COL9A1-209ENST00000489861 SCGB3A1Q96QR1 104 aa4.32□□□□□ -1.72
COL9A1-209ENST00000489861 OPRPNQ99935 248 aaPredicted RBP4.32□□□□□ -1.72
COL9A1-209ENST00000489861 ALKBH7Q9BT30 221 aaPredicted RBP4.32□□□□□ -1.72
COL9A1-209ENST00000489861 CARHSP1Q9Y2V2 147 aaKnown RBP4.32□□□□□ -1.72
COL9A1-209ENST00000489861 IGIPA6NJ69 53 aa4.31□□□□□ -1.72
COL9A1-209ENST00000489861 NDUFA5Q16718 116 aa4.31□□□□□ -1.72
COL9A1-209ENST00000489861 GAGE2EQ4V326 116 aa4.31□□□□□ -1.72
COL9A1-209ENST00000489861 UNQ6190/PRO20217Q6UXQ8 127 aa4.31□□□□□ -1.72
COL9A1-209ENST00000489861 FA2HQ7L5A8 372 aa4.31□□□□□ -1.72
COL9A1-209ENST00000489861 FAM19A5Q7Z5A7 132 aaPredicted RBP4.31□□□□□ -1.72
COL9A1-209ENST00000489861 TOMM7Q9P0U1 55 aa4.31□□□□□ -1.72
COL9A1-209ENST00000489861 GAGE2DQ9UEU5 116 aa4.31□□□□□ -1.72
COL9A1-209ENST00000489861 F8VRH5 84 aa4.3□□□□□ -1.72
COL9A1-209ENST00000489861 H3BRM9 83 aa4.3□□□□□ -1.72
COL9A1-209ENST00000489861 RAB5BP61020 215 aa4.3□□□□□ -1.72
COL9A1-209ENST00000489861 PDZD11Q5EBL8 140 aa4.3□□□□□ -1.72
COL9A1-209ENST00000489861 FAM104AQ969W3 186 aa4.3□□□□□ -1.72
COL9A1-209ENST00000489861 C6orf48Q9UBA6 75 aa4.3□□□□□ -1.72
COL9A1-209ENST00000489861 TINCRA0A1B0GVN0 87 aa4.29□□□□□ -1.72
COL9A1-209ENST00000489861 CRYGAP11844 174 aa4.29□□□□□ -1.72
COL9A1-209ENST00000489861 RPL28P46779 137 aaKnown RBP4.29□□□□□ -1.72
COL9A1-209ENST00000489861 KRTAP10-6P60371 365 aaPredicted RBP4.29□□□□□ -1.72
COL9A1-209ENST00000489861 MT1HP80294 61 aa4.29□□□□□ -1.72
COL9A1-209ENST00000489861 KIAA0087Q14695 138 aa4.29□□□□□ -1.72
COL9A1-209ENST00000489861 SFTA2Q6UW10 78 aa4.29□□□□□ -1.72
COL9A1-209ENST00000489861 LINC00469Q8N7U9 141 aa4.29□□□□□ -1.72
COL9A1-209ENST00000489861 TP73-AS1Q9UF72 201 aa4.29□□□□□ -1.72
COL9A1-209ENST00000489861 LINC01546A6NGU7 62 aa4.28□□□□□ -1.72
COL9A1-209ENST00000489861 ZNF861PO60384 105 aa4.28□□□□□ -1.72
COL9A1-209ENST00000489861 FABP9Q0Z7S8 132 aa4.28□□□□□ -1.72
COL9A1-209ENST00000489861 PMVKQ15126 192 aa4.28□□□□□ -1.72
COL9A1-209ENST00000489861 TPRXLQ17RH7 258 aa4.28□□□□□ -1.72
COL9A1-209ENST00000489861 KIAA1644Q3SXP7 199 aa4.28□□□□□ -1.72
COL9A1-209ENST00000489861 C10orf25Q5T742 122 aa4.28□□□□□ -1.72
COL9A1-209ENST00000489861 LINC00173Q6ZV60 143 aa4.28□□□□□ -1.72
COL9A1-209ENST00000489861 COMMD7Q86VX2 200 aa4.28□□□□□ -1.72
COL9A1-209ENST00000489861 RETNLBQ9BQ08 111 aa4.28□□□□□ -1.72
COL9A1-209ENST00000489861 RPS10P5Q9NQ39 176 aa4.28□□□□□ -1.72
COL9A1-209ENST00000489861 ATP5LO75964 103 aa4.27□□□□□ -1.73
COL9A1-209ENST00000489861 CFC1BP0CG36 223 aa4.27□□□□□ -1.73
COL9A1-209ENST00000489861 ADCYAP1P18509 176 aa4.27□□□□□ -1.73
COL9A1-209ENST00000489861 CTAG1AP78358 180 aa4.27□□□□□ -1.73
COL9A1-209ENST00000489861 KRTAP19-2Q3LHN2 52 aa4.27□□□□□ -1.73
COL9A1-209ENST00000489861 C2orf82Q6UX34 121 aa4.27□□□□□ -1.73
COL9A1-209ENST00000489861 COX7B2Q8TF08 81 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms