RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 TMEM263Q8WUH6 116 aaKnown RBP3.59□□□□□ -1.84
CCDC39-204ENST00000476379 SPANXA1Q9NS26 97 aa3.59□□□□□ -1.84
CCDC39-204ENST00000476379 UBE2D4Q9Y2X8 147 aa3.59□□□□□ -1.84
CCDC39-204ENST00000476379 UBE2D1P51668 147 aa3.58□□□□□ -1.84
CCDC39-204ENST00000476379 MIAQ16674 131 aa3.58□□□□□ -1.84
CCDC39-204ENST00000476379 SERTAD4-AS1Q5TG53 156 aa3.58□□□□□ -1.84
CCDC39-204ENST00000476379 KRTAP24-1Q3LI83 254 aa3.58□□□□□ -1.84
CCDC39-204ENST00000476379 SHISA2Q6UWI4 295 aa3.58□□□□□ -1.84
CCDC39-204ENST00000476379 KIF25-AS1Q9Y6Z4 181 aa3.58□□□□□ -1.84
CCDC39-204ENST00000476379 A0A1B0GX51 115 aa3.58□□□□□ -1.84
CCDC39-204ENST00000476379 IGLV1-40P01703 118 aa3.58□□□□□ -1.84
CCDC39-204ENST00000476379 LINC00242Q5T6M2 205 aa3.58□□□□□ -1.84
CCDC39-204ENST00000476379 A0A096LNI7 61 aa3.58□□□□□ -1.84
CCDC39-204ENST00000476379 SS18Q15532 418 aa3.58□□□□□ -1.84
CCDC39-204ENST00000476379 LINC01006Q8NI28 216 aa3.58□□□□□ -1.84
CCDC39-204ENST00000476379 C9orf85Q96MD7 179 aa3.58□□□□□ -1.84
CCDC39-204ENST00000476379 FAM222AQ5U5X8 452 aa3.57□□□□□ -1.84
CCDC39-204ENST00000476379 ATP6V0E2Q8NHE4 81 aa3.57□□□□□ -1.84
CCDC39-204ENST00000476379 hADV29S1A0JD25 119 aa3.57□□□□□ -1.84
CCDC39-204ENST00000476379 CHCHD7Q9BUK0 85 aa3.57□□□□□ -1.84
CCDC39-204ENST00000476379 PRO0461Q9UI25 63 aa3.57□□□□□ -1.84
CCDC39-204ENST00000476379 A0A087WYN8 130 aa3.57□□□□□ -1.84
CCDC39-204ENST00000476379 NDUFC2-KCTD14E9PQ53 114 aa3.57□□□□□ -1.84
CCDC39-204ENST00000476379 C1orf158Q8N1D5 194 aa3.57□□□□□ -1.84
CCDC39-204ENST00000476379 IGKV2D-24A0A075B6R9 120 aa3.56□□□□□ -1.84
CCDC39-204ENST00000476379 J3KT08 172 aa3.56□□□□□ -1.84
CCDC39-204ENST00000476379 K7EMT4 169 aa3.56□□□□□ -1.84
CCDC39-204ENST00000476379 C6orf223Q8N319 242 aa3.56□□□□□ -1.84
CCDC39-204ENST00000476379 LOC107984640A0A0U1RRK4 108 aa3.56□□□□□ -1.84
CCDC39-204ENST00000476379 DSCR9P59020 149 aa3.56□□□□□ -1.84
CCDC39-204ENST00000476379 KRTAP10-3P60369 221 aa3.56□□□□□ -1.84
CCDC39-204ENST00000476379 UBE2D3P61077 147 aa3.56□□□□□ -1.84
CCDC39-204ENST00000476379 UBE2D2P62837 147 aa3.56□□□□□ -1.84
CCDC39-204ENST00000476379 SOSTDC1Q6X4U4 206 aa3.56□□□□□ -1.84
CCDC39-204ENST00000476379 Q6YL49 198 aa3.56□□□□□ -1.84
CCDC39-204ENST00000476379 FAM218AQ96MZ4 157 aa3.56□□□□□ -1.84
CCDC39-204ENST00000476379 TMEM126AQ9H061 195 aa3.56□□□□□ -1.84
CCDC39-204ENST00000476379 H3BUA1 57 aa3.55□□□□□ -1.84
CCDC39-204ENST00000476379 TIRAPP58753 221 aa3.55□□□□□ -1.84
CCDC39-204ENST00000476379 NTM-AS1Q6ZSK4 140 aa3.55□□□□□ -1.84
CCDC39-204ENST00000476379 SMIM11BQ8TCY0 68 aa3.55□□□□□ -1.84
CCDC39-204ENST00000476379 TMEM89A2RUT3 159 aa3.55□□□□□ -1.84
CCDC39-204ENST00000476379 CXCL5P42830 114 aa3.55□□□□□ -1.84
CCDC39-204ENST00000476379 HILS1P60008 231 aa3.55□□□□□ -1.84
CCDC39-204ENST00000476379 C6orf99Q4VX62 202 aa3.55□□□□□ -1.84
CCDC39-204ENST00000476379 C4orf48Q5BLP8 95 aa3.55□□□□□ -1.84
CCDC39-204ENST00000476379 SMIM1B2RUZ4 78 aa3.55□□□□□ -1.84
CCDC39-204ENST00000476379 ZNF561-AS1K7EIQ3 104 aa3.55□□□□□ -1.84
CCDC39-204ENST00000476379 PRR4Q16378 134 aa3.55□□□□□ -1.84
CCDC39-204ENST00000476379 RNF152Q8N8N0 203 aa3.55□□□□□ -1.84
CCDC39-204ENST00000476379 SPTSSBQ8NFR3 76 aa3.55□□□□□ -1.84
CCDC39-204ENST00000476379 IGKV2-28A0A075B6P5 120 aa3.54□□□□□ -1.84
CCDC39-204ENST00000476379 TRAV13-2A0A0B4J235 113 aa3.54□□□□□ -1.84
CCDC39-204ENST00000476379 IGKV2D-28P01615 120 aa3.54□□□□□ -1.84
CCDC39-204ENST00000476379 ENHOQ6UWT2 76 aa3.54□□□□□ -1.84
CCDC39-204ENST00000476379 A0A0B4J2C4 111 aa3.54□□□□□ -1.84
CCDC39-204ENST00000476379 CCL18P55774 89 aa3.54□□□□□ -1.84
CCDC39-204ENST00000476379 RBM3P98179 157 aaKnown RBP3.54□□□□□ -1.84
CCDC39-204ENST00000476379 LINC00337Q8N6G1 96 aa3.54□□□□□ -1.84
CCDC39-204ENST00000476379 SNURFQ9Y675 71 aa3.54□□□□□ -1.84
CCDC39-204ENST00000476379 TRBV10-1A0A0K0K1A3 114 aa3.54□□□□□ -1.84
CCDC39-204ENST00000476379 TMEM258P61165 79 aa3.54□□□□□ -1.84
CCDC39-204ENST00000476379 C20orf197Q8N268 126 aa3.54□□□□□ -1.84
CCDC39-204ENST00000476379 TRBV6-5A0A0K0K1A5 114 aa3.54□□□□□ -1.84
CCDC39-204ENST00000476379 FAM240AA0A1B0GVK7 77 aa3.54□□□□□ -1.84
CCDC39-204ENST00000476379 BRI3O95415 125 aa3.54□□□□□ -1.84
CCDC39-204ENST00000476379 C4orf3Q8WVX3 66 aa3.54□□□□□ -1.84
CCDC39-204ENST00000476379 DSCR8Q96T75 97 aa3.54□□□□□ -1.84
CCDC39-204ENST00000476379 C3orf84H3BNL1 204 aa3.53□□□□□ -1.84
CCDC39-204ENST00000476379 COX7A2LO14548 114 aa3.53□□□□□ -1.84
CCDC39-204ENST00000476379 MRPS36P82909 103 aaKnown RBP3.53□□□□□ -1.84
CCDC39-204ENST00000476379 UNQ6190/PRO20217Q6UXQ8 127 aa3.53□□□□□ -1.84
CCDC39-204ENST00000476379 SRRM2Q9UQ35 2752 aaKnown RBP3.53□□□□□ -1.84
CCDC39-204ENST00000476379 IGKV2-24A0A0C4DH68 120 aa3.53□□□□□ -1.84
CCDC39-204ENST00000476379 LRCOL1A6NCL2 159 aa3.53□□□□□ -1.84
CCDC39-204ENST00000476379 LST1O00453 97 aa3.53□□□□□ -1.84
CCDC39-204ENST00000476379 TRACP01848 142 aa3.53□□□□□ -1.84
CCDC39-204ENST00000476379 MED14OSP0DP75 135 aa3.53□□□□□ -1.84
CCDC39-204ENST00000476379 SPAG11BQ08648 103 aa3.53□□□□□ -1.84
CCDC39-204ENST00000476379 C9orf129Q5T035 196 aaKnown RBP3.53□□□□□ -1.84
CCDC39-204ENST00000476379 Q8N9L7 120 aa3.53□□□□□ -1.84
CCDC39-204ENST00000476379 CHCHD10Q8WYQ3 142 aaPredicted RBP3.53□□□□□ -1.84
CCDC39-204ENST00000476379 CDC42SE2Q9NRR3 84 aa3.53□□□□□ -1.84
CCDC39-204ENST00000476379 MEGF8Q7Z7M0 2845 aa3.52□□□□□ -1.85
CCDC39-204ENST00000476379 TRBV6-8A0A0A6YYG3 113 aa3.52□□□□□ -1.85
CCDC39-204ENST00000476379 COX8CQ7Z4L0 72 aa3.52□□□□□ -1.85
CCDC39-204ENST00000476379 ODF3Q96PU9 254 aa3.52□□□□□ -1.85
CCDC39-204ENST00000476379 ORMDL1Q9P0S3 153 aa3.52□□□□□ -1.85
CCDC39-204ENST00000476379 REG3AQ06141 175 aa3.52□□□□□ -1.85
CCDC39-204ENST00000476379 CAMK2N2Q96S95 79 aa3.52□□□□□ -1.85
CCDC39-204ENST00000476379 FBN3Q75N90 2809 aa3.52□□□□□ -1.85
CCDC39-204ENST00000476379 TRBV30A0A0K0K1B3 111 aa3.52□□□□□ -1.85
CCDC39-204ENST00000476379 H3BS24 57 aa3.52□□□□□ -1.85
CCDC39-204ENST00000476379 LRRC75A-AS1Q8N1F1 130 aa3.52□□□□□ -1.85
CCDC39-204ENST00000476379 AMELXQ99217 191 aa3.52□□□□□ -1.85
CCDC39-204ENST00000476379 RPL37AP8A6NKH3 93 aa3.52□□□□□ -1.85
CCDC39-204ENST00000476379 NDUFA1O15239 70 aa3.52□□□□□ -1.85
CCDC39-204ENST00000476379 INAFM2P0DMQ5 153 aa3.52□□□□□ -1.85
CCDC39-204ENST00000476379 FAM19A1Q7Z5A9 133 aa3.52□□□□□ -1.85
CCDC39-204ENST00000476379 Q6ZQY7 126 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms