RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 WFDC9Q8NEX5 89 aa7.51□□□□□ -1.21
CUX1-205ENST00000425244 MDFIQ99750 246 aa7.51□□□□□ -1.21
CUX1-205ENST00000425244 TRBV10-2A0A0K0K1G8 114 aa7.51□□□□□ -1.21
CUX1-205ENST00000425244 TRBV6-4A0A1B0GX49 114 aa7.51□□□□□ -1.21
CUX1-205ENST00000425244 SOSTDC1Q6X4U4 206 aa7.5□□□□□ -1.21
CUX1-205ENST00000425244 KIR2DL5BQ8NHK3 375 aa7.5□□□□□ -1.21
CUX1-205ENST00000425244 H7C423 109 aa7.49□□□□□ -1.21
CUX1-205ENST00000425244 FHL2Q14192 279 aa7.49□□□□□ -1.21
CUX1-205ENST00000425244 C15orf53Q8NAA6 179 aa7.49□□□□□ -1.21
CUX1-205ENST00000425244 OVOL2Q9BRP0 275 aa7.49□□□□□ -1.21
CUX1-205ENST00000425244 IGLV4-60A0A075B6I1 120 aa7.49□□□□□ -1.21
CUX1-205ENST00000425244 FAM19A3Q7Z5A8 133 aa7.49□□□□□ -1.21
CUX1-205ENST00000425244 RPS28P62857 69 aaKnown RBP7.48□□□□□ -1.21
CUX1-205ENST00000425244 UBE2WQ96B02 151 aa7.48□□□□□ -1.21
CUX1-205ENST00000425244 TRBV6-8A0A0A6YYG3 113 aa7.48□□□□□ -1.21
CUX1-205ENST00000425244 LST1O00453 97 aa7.48□□□□□ -1.21
CUX1-205ENST00000425244 PRB2P02812 416 aaPredicted RBP7.47□□□□□ -1.21
CUX1-205ENST00000425244 KRTAP10-11P60412 298 aa7.47□□□□□ -1.21
CUX1-205ENST00000425244 C9orf153Q5TBE3 101 aa7.47□□□□□ -1.21
CUX1-205ENST00000425244 COPS9Q8WXC6 57 aa7.47□□□□□ -1.21
CUX1-205ENST00000425244 COX7B2Q8TF08 81 aa7.47□□□□□ -1.21
CUX1-205ENST00000425244 A0A096LPF7 62 aa7.46□□□□□ -1.21
CUX1-205ENST00000425244 DEFB135Q30KP9 77 aa7.46□□□□□ -1.21
CUX1-205ENST00000425244 C5orf38Q86SI9 138 aa7.46□□□□□ -1.21
CUX1-205ENST00000425244 TRAV8-4A0A0B4J246 113 aa7.46□□□□□ -1.22
CUX1-205ENST00000425244 IGHV4-30-4P0DP06 118 aa7.46□□□□□ -1.22
CUX1-205ENST00000425244 GYPEP15421 78 aa7.46□□□□□ -1.22
CUX1-205ENST00000425244 C11orf68Q9H3H3 251 aaKnown RBP7.46□□□□□ -1.22
CUX1-205ENST00000425244 C3orf22Q8N5N4 141 aa7.45□□□□□ -1.22
CUX1-205ENST00000425244 LINC00158P58513 81 aa7.45□□□□□ -1.22
CUX1-205ENST00000425244 MIR7-3HGQ8N6C7 128 aa7.45□□□□□ -1.22
CUX1-205ENST00000425244 H3BT86 120 aa7.44□□□□□ -1.22
CUX1-205ENST00000425244 DEFB4AO15263 64 aa7.44□□□□□ -1.22
CUX1-205ENST00000425244 CLPSL2Q6UWE3 100 aa7.44□□□□□ -1.22
CUX1-205ENST00000425244 KLK5Q9Y337 293 aaPredicted RBP7.44□□□□□ -1.22
CUX1-205ENST00000425244 COX7A2LO14548 114 aa7.43□□□□□ -1.22
CUX1-205ENST00000425244 PFN2P35080 140 aa7.43□□□□□ -1.22
CUX1-205ENST00000425244 XCL1P47992 114 aa7.43□□□□□ -1.22
CUX1-205ENST00000425244 IGHV3OR16-9A0A0B4J2B5 98 aa7.42□□□□□ -1.22
CUX1-205ENST00000425244 UQCRQO14949 82 aa7.42□□□□□ -1.22
CUX1-205ENST00000425244 LINC00526Q96FQ7 95 aa7.42□□□□□ -1.22
CUX1-205ENST00000425244 DNHD1Q96M86 4753 aa7.42□□□□□ -1.22
CUX1-205ENST00000425244 TRBV7-7A0A0K0K1E9 115 aa7.42□□□□□ -1.22
CUX1-205ENST00000425244 CRPP02741 224 aa7.42□□□□□ -1.22
CUX1-205ENST00000425244 SND1-IT1Q9HBX3 110 aa7.42□□□□□ -1.22
CUX1-205ENST00000425244 APOC4P55056 127 aa7.41□□□□□ -1.22
CUX1-205ENST00000425244 FAM222AQ5U5X8 452 aa7.41□□□□□ -1.22
CUX1-205ENST00000425244 X6R8D5 127 aa7.41□□□□□ -1.22
CUX1-205ENST00000425244 LINC00959A0A1B0GUT2 108 aa7.41□□□□□ -1.22
CUX1-205ENST00000425244 C4orf26Q17RF5 130 aa7.41□□□□□ -1.22
CUX1-205ENST00000425244 LINC01600Q96MT4 127 aa7.41□□□□□ -1.22
CUX1-205ENST00000425244 A0A087WZ39 114 aa7.4□□□□□ -1.22
CUX1-205ENST00000425244 HRCT1Q6UXD1 115 aa7.4□□□□□ -1.22
CUX1-205ENST00000425244 FAM236AA0A1B0GUQ0 79 aa7.4□□□□□ -1.23
CUX1-205ENST00000425244 FAM236BA0A1B0GV22 79 aa7.4□□□□□ -1.23
CUX1-205ENST00000425244 LINC00337Q8N6G1 96 aa7.4□□□□□ -1.23
CUX1-205ENST00000425244 TENM3Q9P273 2699 aa7.39□□□□□ -1.23
CUX1-205ENST00000425244 TRAV13-2A0A0B4J235 113 aa7.39□□□□□ -1.23
CUX1-205ENST00000425244 PAX4O43316 350 aa7.39□□□□□ -1.23
CUX1-205ENST00000425244 C6orf226Q5I0X4 101 aa7.39□□□□□ -1.23
CUX1-205ENST00000425244 FAM218AQ96MZ4 157 aa7.39□□□□□ -1.23
CUX1-205ENST00000425244 PRO0255Q9UI72 69 aa7.39□□□□□ -1.23
CUX1-205ENST00000425244 RETNQ9HD89 108 aa7.39□□□□□ -1.23
CUX1-205ENST00000425244 IGKV2-28A0A075B6P5 120 aa7.38□□□□□ -1.23
CUX1-205ENST00000425244 IGKV2D-28P01615 120 aa7.38□□□□□ -1.23
CUX1-205ENST00000425244 CCL18P55774 89 aa7.38□□□□□ -1.23
CUX1-205ENST00000425244 EGFEM1PQ0D2K5 195 aa7.38□□□□□ -1.23
CUX1-205ENST00000425244 Q9HAA7 133 aa7.38□□□□□ -1.23
CUX1-205ENST00000425244 DNAH3Q8TD57 4116 aa7.38□□□□□ -1.23
CUX1-205ENST00000425244 SS18Q15532 418 aa7.38□□□□□ -1.23
CUX1-205ENST00000425244 DEFB121Q5J5C9 76 aa7.38□□□□□ -1.23
CUX1-205ENST00000425244 GAGE2AQ6NT46 116 aa7.38□□□□□ -1.23
CUX1-205ENST00000425244 LINC00612Q8N6U2 182 aa7.38□□□□□ -1.23
CUX1-205ENST00000425244 BAALC-AS2P0C853 105 aa7.37□□□□□ -1.23
CUX1-205ENST00000425244 Q5XG85 94 aa7.37□□□□□ -1.23
CUX1-205ENST00000425244 IGLV10-54A0A075B6I4 117 aa7.37□□□□□ -1.23
CUX1-205ENST00000425244 IBA57-AS1B1ANH7 110 aa7.37□□□□□ -1.23
CUX1-205ENST00000425244 Q8N3U1 123 aa7.37□□□□□ -1.23
CUX1-205ENST00000425244 TRACP01848 142 aa7.36□□□□□ -1.23
CUX1-205ENST00000425244 HTN3P15516 51 aa7.36□□□□□ -1.23
CUX1-205ENST00000425244 LINC00269Q8N2A0 174 aa7.36□□□□□ -1.23
CUX1-205ENST00000425244 SMIM11BQ8TCY0 68 aa7.36□□□□□ -1.23
CUX1-205ENST00000425244 IMUPQ9GZP8 106 aa7.36□□□□□ -1.23
CUX1-205ENST00000425244 IGHV4-28A0A0C4DH34 117 aa7.35□□□□□ -1.23
CUX1-205ENST00000425244 CRYGAP11844 174 aa7.35□□□□□ -1.23
CUX1-205ENST00000425244 RPL28P46779 137 aaKnown RBP7.35□□□□□ -1.23
CUX1-205ENST00000425244 DPH3Q96FX2 82 aa7.35□□□□□ -1.23
CUX1-205ENST00000425244 FAM240AA0A1B0GVK7 77 aa7.35□□□□□ -1.23
CUX1-205ENST00000425244 OXTP01178 125 aa7.35□□□□□ -1.23
CUX1-205ENST00000425244 DAD1P61803 113 aa7.35□□□□□ -1.23
CUX1-205ENST00000425244 ANGP03950 147 aaKnown RBP7.34□□□□□ -1.23
CUX1-205ENST00000425244 PRO0628Q9UI54 55 aa7.34□□□□□ -1.23
CUX1-205ENST00000425244 COL7A1Q02388 2944 aa7.34□□□□□ -1.23
CUX1-205ENST00000425244 A0A087WYN8 130 aa7.34□□□□□ -1.23
CUX1-205ENST00000425244 A0A1B0GUV1 79 aa7.34□□□□□ -1.23
CUX1-205ENST00000425244 LYRM9A8MSI8 78 aa7.34□□□□□ -1.23
CUX1-205ENST00000425244 COX7CP15954 63 aa7.34□□□□□ -1.23
CUX1-205ENST00000425244 MALP21145 153 aa7.34□□□□□ -1.23
CUX1-205ENST00000425244 DNAL4O96015 105 aa7.33□□□□□ -1.24
CUX1-205ENST00000425244 ATP5G1P05496 136 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms