RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 PRO0461Q9UI25 63 aa14.07□□□□□ -0.16
CCDC88B-202ENST00000356786 CASC2Q6XLA1 102 aa14.06□□□□□ -0.16
CCDC88B-202ENST00000356786 IGLV4-60A0A075B6I1 120 aa14.05□□□□□ -0.16
CCDC88B-202ENST00000356786 EXPH5Q8NEV8 1989 aa14.05□□□□□ -0.16
CCDC88B-202ENST00000356786 LELP1Q5T871 98 aa14.04□□□□□ -0.16
CCDC88B-202ENST00000356786 MUC7Q8TAX7 377 aa14.04□□□□□ -0.16
CCDC88B-202ENST00000356786 ODF3L2Q3SX64 289 aa14.03□□□□□ -0.16
CCDC88B-202ENST00000356786 CPAMD8Q8IZJ3 1885 aa14.03□□□□□ -0.16
CCDC88B-202ENST00000356786 C5orf42Q9H799 3197 aa14.03□□□□□ -0.16
CCDC88B-202ENST00000356786 RPL37AP8A6NKH3 93 aa14.03□□□□□ -0.16
CCDC88B-202ENST00000356786 C14orf177Q52M58 125 aa14.03□□□□□ -0.16
CCDC88B-202ENST00000356786 TRBV10-3A0A0K0K1G6 114 aa14.03□□□□□ -0.16
CCDC88B-202ENST00000356786 RANBP2P49792 3224 aaKnown RBP14.02□□□□□ -0.16
CCDC88B-202ENST00000356786 Q8N9L7 120 aa14.02□□□□□ -0.16
CCDC88B-202ENST00000356786 PMAIP1Q13794 54 aa14.01□□□□□ -0.17
CCDC88B-202ENST00000356786 ZNF843Q8N446 348 aa14.01□□□□□ -0.17
CCDC88B-202ENST00000356786 PRYO14603 147 aa14□□□□□ -0.17
CCDC88B-202ENST00000356786 HILS1P60008 231 aa14□□□□□ -0.17
CCDC88B-202ENST00000356786 Q6ZSN1 163 aa14□□□□□ -0.17
CCDC88B-202ENST00000356786 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.99□□□□□ -0.17
CCDC88B-202ENST00000356786 KIF25-AS1Q9Y6Z4 181 aa13.99□□□□□ -0.17
CCDC88B-202ENST00000356786 AVPP01185 164 aa13.99□□□□□ -0.17
CCDC88B-202ENST00000356786 LINC00337Q8N6G1 96 aa13.98□□□□□ -0.17
CCDC88B-202ENST00000356786 LINC00208Q96KT6 92 aa13.98□□□□□ -0.17
CCDC88B-202ENST00000356786 NANOS2P60321 138 aaKnown RBP13.98□□□□□ -0.17
CCDC88B-202ENST00000356786 KPRPQ5T749 579 aaPredicted RBP13.98□□□□□ -0.17
CCDC88B-202ENST00000356786 LINC01546A6NGU7 62 aa13.97□□□□□ -0.17
CCDC88B-202ENST00000356786 LINC01006Q8NI28 216 aa13.97□□□□□ -0.17
CCDC88B-202ENST00000356786 MKI67P46013 3256 aaKnown RBP13.97□□□□□ -0.17
CCDC88B-202ENST00000356786 Q6ZVQ6 151 aa13.96□□□□□ -0.18
CCDC88B-202ENST00000356786 TMEM254Q8TBM7 123 aa13.96□□□□□ -0.18
CCDC88B-202ENST00000356786 TET2Q6N021 2002 aaPredicted RBP13.95□□□□□ -0.18
CCDC88B-202ENST00000356786 C1orf137Q5JT78 98 aa13.95□□□□□ -0.18
CCDC88B-202ENST00000356786 PRR15LQ9BU68 103 aa13.95□□□□□ -0.18
CCDC88B-202ENST00000356786 SPINK6Q6UWN8 80 aa13.94□□□□□ -0.18
CCDC88B-202ENST00000356786 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.94□□□□□ -0.18
CCDC88B-202ENST00000356786 PSPHP1O15172 72 aa13.93□□□□□ -0.18
CCDC88B-202ENST00000356786 CHD9Q3L8U1 2897 aa13.93□□□□□ -0.18
CCDC88B-202ENST00000356786 MTORP42345 2549 aa13.92□□□□□ -0.18
CCDC88B-202ENST00000356786 PRRC2CQ9Y520 2896 aaKnown RBP13.92□□□□□ -0.18
CCDC88B-202ENST00000356786 BEAN1Q3B7T3 259 aa13.92□□□□□ -0.18
CCDC88B-202ENST00000356786 LINC00575Q6W349 94 aa13.92□□□□□ -0.18
CCDC88B-202ENST00000356786 EGFEM1PQ0D2K5 195 aa13.92□□□□□ -0.18
CCDC88B-202ENST00000356786 Q8N2B8 174 aa13.92□□□□□ -0.18
CCDC88B-202ENST00000356786 CRYGAP11844 174 aa13.91□□□□□ -0.18
CCDC88B-202ENST00000356786 MUC4Q99102 2169 aa13.91□□□□□ -0.18
CCDC88B-202ENST00000356786 LINC01547P58512 204 aaPredicted RBP13.91□□□□□ -0.18
CCDC88B-202ENST00000356786 A8MTW9 85 aa13.9□□□□□ -0.18
CCDC88B-202ENST00000356786 KIR2DL5BQ8NHK3 375 aa13.9□□□□□ -0.18
CCDC88B-202ENST00000356786 TRBV7-6A0A0J9YX20 115 aa13.89□□□□□ -0.19
CCDC88B-202ENST00000356786 LINC00315P59091 139 aa13.88□□□□□ -0.19
CCDC88B-202ENST00000356786 FHL2Q14192 279 aa13.87□□□□□ -0.19
CCDC88B-202ENST00000356786 IGLV5-39A0A0G2JS06 123 aa13.86□□□□□ -0.19
CCDC88B-202ENST00000356786 K7ERS5 55 aa13.86□□□□□ -0.19
CCDC88B-202ENST00000356786 BRI3O95415 125 aa13.86□□□□□ -0.19
CCDC88B-202ENST00000356786 SBSPONQ8IVN8 264 aa13.86□□□□□ -0.19
CCDC88B-202ENST00000356786 PRO0628Q9UI54 55 aa13.86□□□□□ -0.19
CCDC88B-202ENST00000356786 LAMA3Q16787 3333 aa13.85□□□□□ -0.19
CCDC88B-202ENST00000356786 IGHV4-30-4P0DP06 118 aa13.85□□□□□ -0.19
CCDC88B-202ENST00000356786 ADAMTS20P59510 1910 aa13.85□□□□□ -0.19
CCDC88B-202ENST00000356786 A0A1W2PPR1 153 aa13.84□□□□□ -0.19
CCDC88B-202ENST00000356786 C6orf223Q8N319 242 aa13.83□□□□□ -0.19
CCDC88B-202ENST00000356786 ESRGQ1W209 222 aa13.82□□□□□ -0.2
CCDC88B-202ENST00000356786 BRCA2P51587 3418 aa13.82□□□□□ -0.2
CCDC88B-202ENST00000356786 RPS28P62857 69 aaKnown RBP13.81□□□□□ -0.2
CCDC88B-202ENST00000356786 IGLV9-49A0A0B4J1Y8 123 aa13.8□□□□□ -0.2
CCDC88B-202ENST00000356786 TRAV10A0A0B4J240 114 aa13.8□□□□□ -0.2
CCDC88B-202ENST00000356786 INAFM1C9JVW0 142 aa13.8□□□□□ -0.2
CCDC88B-202ENST00000356786 A0A1B0GUV1 79 aa13.79□□□□□ -0.2
CCDC88B-202ENST00000356786 C4orf26Q17RF5 130 aa13.79□□□□□ -0.2
CCDC88B-202ENST00000356786 FAM218AQ96MZ4 157 aa13.79□□□□□ -0.2
CCDC88B-202ENST00000356786 LRRK2Q5S007 2527 aa13.78□□□□□ -0.2
CCDC88B-202ENST00000356786 CXCL6P80162 114 aa13.78□□□□□ -0.2
CCDC88B-202ENST00000356786 IGLV1-51P01701 117 aa13.77□□□□□ -0.21
CCDC88B-202ENST00000356786 F8P00451 2351 aa13.76□□□□□ -0.21
CCDC88B-202ENST00000356786 IGHV3OR16-9A0A0B4J2B5 98 aa13.76□□□□□ -0.21
CCDC88B-202ENST00000356786 A0A087WSZ3 146 aa13.75□□□□□ -0.21
CCDC88B-202ENST00000356786 PLAC8L1A1L4L8 177 aa13.75□□□□□ -0.21
CCDC88B-202ENST00000356786 PCOTHQ58A44 107 aa13.74□□□□□ -0.21
CCDC88B-202ENST00000356786 C10orf25Q5T742 122 aa13.74□□□□□ -0.21
CCDC88B-202ENST00000356786 RETNQ9HD89 108 aa13.74□□□□□ -0.21
CCDC88B-202ENST00000356786 PTPRBP23467 1997 aa13.74□□□□□ -0.21
CCDC88B-202ENST00000356786 DEFB116Q30KQ4 102 aa13.73□□□□□ -0.21
CCDC88B-202ENST00000356786 PLA2G2AP14555 144 aa13.72□□□□□ -0.21
CCDC88B-202ENST00000356786 RAI1Q7Z5J4 1906 aaPredicted RBP13.72□□□□□ -0.21
CCDC88B-202ENST00000356786 ZNF706Q9Y5V0 76 aaPredicted RBP13.72□□□□□ -0.21
CCDC88B-202ENST00000356786 C11orf72Q8NBR9 251 aa13.71□□□□□ -0.21
CCDC88B-202ENST00000356786 H0Y9P7 68 aa13.7□□□□□ -0.22
CCDC88B-202ENST00000356786 SPATA3Q8NHX4 192 aa13.7□□□□□ -0.22
CCDC88B-202ENST00000356786 Q9UF83 564 aa13.7□□□□□ -0.22
CCDC88B-202ENST00000356786 FAM19A4Q96LR4 140 aa13.7□□□□□ -0.22
CCDC88B-202ENST00000356786 POLQO75417 2590 aa13.7□□□□□ -0.22
CCDC88B-202ENST00000356786 IGLV5-45A0A087WSX0 123 aa13.69□□□□□ -0.22
CCDC88B-202ENST00000356786 REG3GQ6UW15 175 aa13.69□□□□□ -0.22
CCDC88B-202ENST00000356786 LINC01561Q8N1V8 128 aa13.69□□□□□ -0.22
CCDC88B-202ENST00000356786 KRTAP10-9P60411 292 aa13.68□□□□□ -0.22
CCDC88B-202ENST00000356786 TRANK1O15050 2925 aa13.68□□□□□ -0.22
CCDC88B-202ENST00000356786 HCG22E2RYF7 251 aa13.67□□□□□ -0.22
CCDC88B-202ENST00000356786 BPTFQ12830 3046 aa13.66□□□□□ -0.22
CCDC88B-202ENST00000356786 BCE1O60756 84 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 184.1 ms