RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 TRAV13-1A0A0B4J241 112 aa6.3□□□□□ -1.4
LINC00558-201ENST00000569422 TRGV2A0A075B6R0 118 aa6.3□□□□□ -1.4
LINC00558-201ENST00000569422 F8W1H4 67 aa6.3□□□□□ -1.4
LINC00558-201ENST00000569422 A0A0J9YXY3 114 aa6.29□□□□□ -1.4
LINC00558-201ENST00000569422 A8MTW9 85 aa6.29□□□□□ -1.4
LINC00558-201ENST00000569422 IFITM1P13164 125 aa6.29□□□□□ -1.4
LINC00558-201ENST00000569422 CDKN2A-AS1Q9UH64 79 aa6.29□□□□□ -1.4
LINC00558-201ENST00000569422 NDUFA12Q9UI09 145 aa6.29□□□□□ -1.4
LINC00558-201ENST00000569422 PDZD2O15018 2839 aa6.29□□□□□ -1.4
LINC00558-201ENST00000569422 LOC100131303A0A0U1RQF7 123 aa6.28□□□□□ -1.4
LINC00558-201ENST00000569422 PRO1854Q9UHT4 67 aa6.28□□□□□ -1.4
LINC00558-201ENST00000569422 TCL1BO95988 128 aa6.28□□□□□ -1.4
LINC00558-201ENST00000569422 TRBV20-1A0A075B6N2 111 aa6.28□□□□□ -1.4
LINC00558-201ENST00000569422 MRPS36P82909 103 aaKnown RBP6.28□□□□□ -1.4
LINC00558-201ENST00000569422 COX6A2Q02221 97 aa6.28□□□□□ -1.4
LINC00558-201ENST00000569422 KRTAP1-1Q07627 177 aa6.28□□□□□ -1.4
LINC00558-201ENST00000569422 ADAMTSL4-AS1Q5T5F5 129 aa6.28□□□□□ -1.4
LINC00558-201ENST00000569422 PRR26Q8N8Z3 221 aa6.28□□□□□ -1.4
LINC00558-201ENST00000569422 PYGO1Q9Y3Y4 419 aa6.28□□□□□ -1.4
LINC00558-201ENST00000569422 RPL36AP83881 106 aaKnown RBP6.27□□□□□ -1.41
LINC00558-201ENST00000569422 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.27□□□□□ -1.41
LINC00558-201ENST00000569422 RPL36ALQ969Q0 106 aaKnown RBP6.27□□□□□ -1.41
LINC00558-201ENST00000569422 GCN1Q92616 2671 aaKnown RBP6.27□□□□□ -1.41
LINC00558-201ENST00000569422 IGHV1-58A0A0C4DH39 117 aa6.27□□□□□ -1.41
LINC00558-201ENST00000569422 BEAN1Q3B7T3 259 aa6.27□□□□□ -1.41
LINC00558-201ENST00000569422 EIF4EBP3O60516 100 aaPredicted RBP6.26□□□□□ -1.41
LINC00558-201ENST00000569422 J3QKU1 62 aa6.26□□□□□ -1.41
LINC00558-201ENST00000569422 PRO0461Q9UI25 63 aa6.26□□□□□ -1.41
LINC00558-201ENST00000569422 FAM236AA0A1B0GUQ0 79 aa6.26□□□□□ -1.41
LINC00558-201ENST00000569422 FAM236BA0A1B0GV22 79 aa6.26□□□□□ -1.41
LINC00558-201ENST00000569422 K7EQD1 137 aa6.26□□□□□ -1.41
LINC00558-201ENST00000569422 DEFB130BP0DP73 79 aa6.26□□□□□ -1.41
LINC00558-201ENST00000569422 DEFB130AP0DP74 79 aa6.26□□□□□ -1.41
LINC00558-201ENST00000569422 SMCPP49901 116 aaPredicted RBP6.26□□□□□ -1.41
LINC00558-201ENST00000569422 Q6Q795 121 aa6.26□□□□□ -1.41
LINC00558-201ENST00000569422 NTM-AS1Q6ZSK4 140 aa6.26□□□□□ -1.41
LINC00558-201ENST00000569422 TMEM263Q8WUH6 116 aaKnown RBP6.26□□□□□ -1.41
LINC00558-201ENST00000569422 VSIG2Q96IQ7 327 aa6.26□□□□□ -1.41
LINC00558-201ENST00000569422 TRGV4A0A0C4DH28 118 aa6.25□□□□□ -1.41
LINC00558-201ENST00000569422 GIG44P09565 113 aaPredicted RBP6.25□□□□□ -1.41
LINC00558-201ENST00000569422 PMAIP1Q13794 54 aa6.25□□□□□ -1.41
LINC00558-201ENST00000569422 HERVK_113P63121 156 aa6.25□□□□□ -1.41
LINC00558-201ENST00000569422 TTC32Q5I0X7 151 aa6.25□□□□□ -1.41
LINC00558-201ENST00000569422 UBE2L6O14933 153 aa6.24□□□□□ -1.41
LINC00558-201ENST00000569422 RNASE1P07998 156 aaKnown RBP6.24□□□□□ -1.41
LINC00558-201ENST00000569422 UBE2D3P61077 147 aa6.24□□□□□ -1.41
LINC00558-201ENST00000569422 UBE2D2P62837 147 aa6.24□□□□□ -1.41
LINC00558-201ENST00000569422 IGHV3-33P01772 117 aa6.24□□□□□ -1.41
LINC00558-201ENST00000569422 FOXI1Q12951 378 aa6.24□□□□□ -1.41
LINC00558-201ENST00000569422 LINC00482Q8N8I6 264 aa6.24□□□□□ -1.41
LINC00558-201ENST00000569422 ANK3Q12955 4377 aaKnown RBP6.24□□□□□ -1.41
LINC00558-201ENST00000569422 Q9H8V8 135 aa6.23□□□□□ -1.41
LINC00558-201ENST00000569422 VWFP04275 2813 aa6.23□□□□□ -1.41
LINC00558-201ENST00000569422 A0A096LPF7 62 aa6.23□□□□□ -1.41
LINC00558-201ENST00000569422 IGLV1-51P01701 117 aa6.23□□□□□ -1.41
LINC00558-201ENST00000569422 PIK3CD-AS1Q5SR53 167 aa6.23□□□□□ -1.41
LINC00558-201ENST00000569422 LINC00242Q5T6M2 205 aa6.23□□□□□ -1.41
LINC00558-201ENST00000569422 LYRM7Q5U5X0 104 aa6.23□□□□□ -1.41
LINC00558-201ENST00000569422 TOMM7Q9P0U1 55 aa6.23□□□□□ -1.41
LINC00558-201ENST00000569422 TRAV4A0A0B4J268 109 aa6.22□□□□□ -1.41
LINC00558-201ENST00000569422 LITAFQ99732 161 aa6.22□□□□□ -1.41
LINC00558-201ENST00000569422 DEFB4AO15263 64 aa6.22□□□□□ -1.41
LINC00558-201ENST00000569422 C3orf56Q8N813 242 aa6.22□□□□□ -1.41
LINC00558-201ENST00000569422 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.22□□□□□ -1.41
LINC00558-201ENST00000569422 GAGE2BQ13066 116 aa6.22□□□□□ -1.41
LINC00558-201ENST00000569422 GAGE2EQ4V326 116 aa6.22□□□□□ -1.41
LINC00558-201ENST00000569422 GAGE2DQ9UEU5 116 aa6.22□□□□□ -1.41
LINC00558-201ENST00000569422 KRTAP10-3P60369 221 aa6.21□□□□□ -1.41
LINC00558-201ENST00000569422 SPATA3Q8NHX4 192 aa6.21□□□□□ -1.41
LINC00558-201ENST00000569422 CHCHD5Q9BSY4 110 aa6.21□□□□□ -1.41
LINC00558-201ENST00000569422 C19orf73Q9NVV2 129 aa6.21□□□□□ -1.41
LINC00558-201ENST00000569422 PLAC8L1A1L4L8 177 aa6.21□□□□□ -1.42
LINC00558-201ENST00000569422 DAZ2Q13117 558 aaKnown RBP6.21□□□□□ -1.42
LINC00558-201ENST00000569422 DAZ4Q86SG3 579 aaKnown RBP6.21□□□□□ -1.42
LINC00558-201ENST00000569422 C16orf74Q96GX8 76 aa6.21□□□□□ -1.42
LINC00558-201ENST00000569422 DAZ3Q9NR90 486 aaKnown RBP6.21□□□□□ -1.42
LINC00558-201ENST00000569422 TRIAP1O43715 76 aa6.2□□□□□ -1.42
LINC00558-201ENST00000569422 MIAQ16674 131 aa6.2□□□□□ -1.42
LINC00558-201ENST00000569422 PRIMA1Q86XR5 153 aa6.2□□□□□ -1.42
LINC00558-201ENST00000569422 ANKRD29Q8N6D5 301 aa6.2□□□□□ -1.42
LINC00558-201ENST00000569422 TMEM243Q9BU79 118 aa6.2□□□□□ -1.42
LINC00558-201ENST00000569422 SLC25A20O43772 301 aa6.2□□□□□ -1.42
LINC00558-201ENST00000569422 CLEC2BQ92478 149 aa6.2□□□□□ -1.42
LINC00558-201ENST00000569422 C16orf95Q9H693 158 aa6.2□□□□□ -1.42
LINC00558-201ENST00000569422 ATRQ13535 2644 aa6.2□□□□□ -1.42
LINC00558-201ENST00000569422 OTOGQ6ZRI0 2925 aa6.2□□□□□ -1.42
LINC00558-201ENST00000569422 A0A0B4J2C4 111 aa6.2□□□□□ -1.42
LINC00558-201ENST00000569422 PFN2P35080 140 aa6.2□□□□□ -1.42
LINC00558-201ENST00000569422 CDC42SE2Q9NRR3 84 aa6.2□□□□□ -1.42
LINC00558-201ENST00000569422 TRBV10-1A0A0K0K1A3 114 aa6.19□□□□□ -1.42
LINC00558-201ENST00000569422 INAFM1C9JVW0 142 aa6.19□□□□□ -1.42
LINC00558-201ENST00000569422 TMEM262E9PQX1 116 aa6.19□□□□□ -1.42
LINC00558-201ENST00000569422 LY6G6DO95868 133 aa6.19□□□□□ -1.42
LINC00558-201ENST00000569422 CIRBPQ14011 172 aaKnown RBP6.19□□□□□ -1.42
LINC00558-201ENST00000569422 CLPSL2Q6UWE3 100 aa6.19□□□□□ -1.42
LINC00558-201ENST00000569422 DPH3Q96FX2 82 aa6.19□□□□□ -1.42
LINC00558-201ENST00000569422 C11orf68Q9H3H3 251 aaKnown RBP6.19□□□□□ -1.42
LINC00558-201ENST00000569422 ATP6V0E2Q8NHE4 81 aa6.19□□□□□ -1.42
LINC00558-201ENST00000569422 IGLV4-60A0A075B6I1 120 aa6.18□□□□□ -1.42
LINC00558-201ENST00000569422 SMIM1B2RUZ4 78 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms