RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 FREM2Q5SZK8 3169 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 DMXL2Q8TDJ6 3036 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 MYO7BQ6PIF6 2116 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 RIMS1Q86UR5 1692 aaKnown RBP0.17□□□□□ -2.38
USP3-209ENST00000558925 CDK13Q14004 1512 aaKnown RBP0.17□□□□□ -2.38
USP3-209ENST00000558925 DCHS2Q6V1P9 2916 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 TCHHQ07283 1943 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 SRRM2Q9UQ35 2752 aaKnown RBP0.17□□□□□ -2.38
USP3-209ENST00000558925 SIPA1L3O60292 1781 aaPredicted RBP0.17□□□□□ -2.38
USP3-209ENST00000558925 SHROOM2Q13796 1616 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 NHSL1Q5SYE7 1610 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 CICQ96RK0 1608 aaPredicted RBP0.16□□□□□ -2.38
USP3-209ENST00000558925 CC2D2AQ9P2K1 1620 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 PZPP20742 1482 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 GOLGA3Q08378 1498 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 IFT140Q96RY7 1462 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 WDR7Q9Y4E6 1490 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 UTRNP46939 3433 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 CENPEQ02224 2701 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 PRDM2Q13029 1718 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 NWD2Q9ULI1 1742 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 NIPBLQ6KC79 2804 aaeCLIP0.16□□□□□ -2.38
USP3-209ENST00000558925 LOC400499M0QZD8 3231 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 DAPK1P53355 1430 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 CPSF1Q10570 1443 aaKnown RBP0.16□□□□□ -2.38
USP3-209ENST00000558925 VPS13AQ96RL7 3174 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 MGAQ8IWI9 3026 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 TRAV30A0A087WSZ9 112 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 C20orf202A1L168 122 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 C10orf142B7Z368 130 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 MPC2O95563 127 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 PPP1R17O96001 155 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 TNFP01375 233 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 APOC2P02655 101 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 MT-ATP8P03928 68 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 SPINK8P0C7L1 97 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 IFITM1P13164 125 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 GCHFRP30047 84 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 HSD52Q0P140 79 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 C10orf128Q5T292 105 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 C5orf38Q86SI9 138 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 TTC9CQ8N5M4 171 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 FAM213BQ8TBF2 198 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 COPS9Q8WXC6 57 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 PPP3R2Q96LZ3 170 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 SPANXDQ9BXN6 97 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 IER3IP1Q9Y5U9 82 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 CHD9Q3L8U1 2897 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 PLCE1Q9P212 2302 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 KCPQ6ZWJ8 1503 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 ZFYVE16Q7Z3T8 1539 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 GOLGB1Q14789 3259 aaKnown RBP0.16□□□□□ -2.38
USP3-209ENST00000558925 ABCC10Q5T3U5 1492 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 SPHKAPQ2M3C7 1700 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 IFT172Q9UG01 1749 aa0.16□□□□□ -2.38
USP3-209ENST00000558925 EIF4G3O43432 1585 aaKnown RBP0.15□□□□□ -2.38
USP3-209ENST00000558925 BTAF1O14981 1849 aa0.15□□□□□ -2.38
USP3-209ENST00000558925 PLXNB2O15031 1838 aa0.15□□□□□ -2.38
USP3-209ENST00000558925 HMCN2Q8NDA2 5059 aa0.15□□□□□ -2.38
USP3-209ENST00000558925 TET3O43151 1660 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 COL4A6Q14031 1691 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 NAIPQ13075 1403 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 PPIP5K1Q6PFW1 1433 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 C10orf71Q711Q0 1435 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 USP34Q70CQ2 3546 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 DOPEY2Q9Y3R5 2298 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 FAM135AQ9P2D6 1515 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 TRBV7-3A0A075B6L6 115 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 hADV29S1A0JD25 119 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 SMIM6P0DI80 62 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 SNCAP37840 140 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 S100A10P60903 97 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 MRPS10P82664 201 aaKnown RBP0.15□□□□□ -2.39
USP3-209ENST00000558925 WHAMMP3Q1A5X7 153 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 Q5VV11 94 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 C12orf73Q69YU5 71 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 SFTA2Q6UW10 78 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 GTF2H5Q6ZYL4 71 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 SSBP3-AS1Q7Z2R9 100 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 COMMD6Q7Z4G1 85 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 BAGE3Q86Y29 109 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 C8orf59Q8N0T1 100 aaPredicted RBP0.15□□□□□ -2.39
USP3-209ENST00000558925 SNHG12Q9BXW3 62 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 SVEP1Q4LDE5 3571 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 LAMA1P25391 3075 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 NESP48681 1621 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 DNAJC13O75165 2243 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 KTN1Q86UP2 1357 aaKnown RBP0.15□□□□□ -2.39
USP3-209ENST00000558925 WDFY3Q8IZQ1 3526 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 SYNE1Q8NF91 8797 aaKnown RBP0.15□□□□□ -2.39
USP3-209ENST00000558925 CHD1O14646 1710 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 ABCA3Q99758 1704 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 FRYQ5TBA9 3013 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 DMXL1Q9Y485 3027 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 MRC1P22897 1456 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 ARHGEF5Q12774 1597 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 NRKQ7Z2Y5 1582 aa0.15□□□□□ -2.39
USP3-209ENST00000558925 AKAP12Q02952 1782 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 ABCC5O15440 1437 aa0.14□□□□□ -2.39
USP3-209ENST00000558925 SCAPERQ9BY12 1400 aa0.14□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms