RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 NBEAL2Q6ZNJ1 2754 aa11.77□□□□□ -0.52
LDLR-206ENST00000557958 TMEM238LA0A1B0GVL6 79 aa11.77□□□□□ -0.53
LDLR-206ENST00000557958 A6NJY4 79 aa11.77□□□□□ -0.53
LDLR-206ENST00000557958 GAGE6Q13070 117 aa11.77□□□□□ -0.53
LDLR-206ENST00000557958 C12orf74Q32Q52 190 aa11.77□□□□□ -0.53
LDLR-206ENST00000557958 SH2D6Q7Z4S9 175 aa11.77□□□□□ -0.53
LDLR-206ENST00000557958 TRAV26-1A0A087WT03 109 aa11.76□□□□□ -0.53
LDLR-206ENST00000557958 TRAV13-1A0A0B4J241 112 aa11.76□□□□□ -0.53
LDLR-206ENST00000557958 VSIG2Q96IQ7 327 aa11.76□□□□□ -0.53
LDLR-206ENST00000557958 A0A0J9YY99 117 aa11.76□□□□□ -0.53
LDLR-206ENST00000557958 F5H768 121 aa11.76□□□□□ -0.53
LDLR-206ENST00000557958 LINC00242Q5T6M2 205 aa11.76□□□□□ -0.53
LDLR-206ENST00000557958 SPANXB1Q9NS25 103 aaPredicted RBP11.76□□□□□ -0.53
LDLR-206ENST00000557958 NOTCH1P46531 2555 aa11.75□□□□□ -0.53
LDLR-206ENST00000557958 CDKN2A-AS1Q9UH64 79 aa11.75□□□□□ -0.53
LDLR-206ENST00000557958 SPINK8P0C7L1 97 aa11.74□□□□□ -0.53
LDLR-206ENST00000557958 MGAM2Q2M2H8 2515 aa11.74□□□□□ -0.53
LDLR-206ENST00000557958 F8W1H4 67 aa11.74□□□□□ -0.53
LDLR-206ENST00000557958 MRPL23Q16540 153 aaKnown RBP11.74□□□□□ -0.53
LDLR-206ENST00000557958 TRAV8-3A0A0A6YYJ7 113 aa11.73□□□□□ -0.53
LDLR-206ENST00000557958 TMEM238C9JI98 176 aa11.73□□□□□ -0.53
LDLR-206ENST00000557958 C11orf68Q9H3H3 251 aaKnown RBP11.73□□□□□ -0.53
LDLR-206ENST00000557958 NDUFA12Q9UI09 145 aa11.72□□□□□ -0.53
LDLR-206ENST00000557958 A0A1B0GUV1 79 aa11.72□□□□□ -0.53
LDLR-206ENST00000557958 HTN3P15516 51 aa11.72□□□□□ -0.53
LDLR-206ENST00000557958 ICOSQ9Y6W8 199 aa11.72□□□□□ -0.53
LDLR-206ENST00000557958 TMEM262E9PQX1 116 aa11.71□□□□□ -0.53
LDLR-206ENST00000557958 ZFAND6Q6FIF0 208 aa11.71□□□□□ -0.53
LDLR-206ENST00000557958 COX6A2Q02221 97 aa11.7□□□□□ -0.54
LDLR-206ENST00000557958 DNAH3Q8TD57 4116 aa11.7□□□□□ -0.54
LDLR-206ENST00000557958 IGLV4-60A0A075B6I1 120 aa11.7□□□□□ -0.54
LDLR-206ENST00000557958 A0A096LPF7 62 aa11.7□□□□□ -0.54
LDLR-206ENST00000557958 SPATA25Q9BR10 227 aa11.7□□□□□ -0.54
LDLR-206ENST00000557958 IGLV5-39A0A0G2JS06 123 aa11.69□□□□□ -0.54
LDLR-206ENST00000557958 A0A0J9YXY3 114 aa11.69□□□□□ -0.54
LDLR-206ENST00000557958 RPL24P83731 157 aaKnown RBP11.68□□□□□ -0.54
LDLR-206ENST00000557958 C10orf126Q8N4M7 172 aa11.68□□□□□ -0.54
LDLR-206ENST00000557958 DNHD1Q96M86 4753 aa11.68□□□□□ -0.54
LDLR-206ENST00000557958 A0A0J9YWU9 116 aa11.68□□□□□ -0.54
LDLR-206ENST00000557958 SMIM1B2RUZ4 78 aa11.68□□□□□ -0.54
LDLR-206ENST00000557958 NBEAL1Q6ZS30 2694 aa11.67□□□□□ -0.54
LDLR-206ENST00000557958 NDUFA1O15239 70 aa11.67□□□□□ -0.54
LDLR-206ENST00000557958 IGHV3-30P01768 117 aa11.67□□□□□ -0.54
LDLR-206ENST00000557958 IGHV3-30-5P0DP03 117 aa11.67□□□□□ -0.54
LDLR-206ENST00000557958 IGKV3OR2-268A0A0C4DH90 116 aa11.66□□□□□ -0.54
LDLR-206ENST00000557958 H3BNG1 76 aa11.66□□□□□ -0.54
LDLR-206ENST00000557958 J3QR89 54 aa11.66□□□□□ -0.54
LDLR-206ENST00000557958 TM2D3Q9BRN9 247 aa11.66□□□□□ -0.54
LDLR-206ENST00000557958 PRO0461Q9UI25 63 aa11.66□□□□□ -0.54
LDLR-206ENST00000557958 TIMM17BO60830 172 aa11.65□□□□□ -0.54
LDLR-206ENST00000557958 CIRBPQ14011 172 aaKnown RBP11.65□□□□□ -0.54
LDLR-206ENST00000557958 SS18Q15532 418 aa11.65□□□□□ -0.54
LDLR-206ENST00000557958 LELP1Q5T871 98 aa11.65□□□□□ -0.54
LDLR-206ENST00000557958 H3BMG7 143 aa11.64□□□□□ -0.55
LDLR-206ENST00000557958 LINC00959A0A1B0GUT2 108 aa11.63□□□□□ -0.55
LDLR-206ENST00000557958 WFDC2Q14508 124 aa11.63□□□□□ -0.55
LDLR-206ENST00000557958 LYRM7Q5U5X0 104 aa11.63□□□□□ -0.55
LDLR-206ENST00000557958 SPANXDQ9BXN6 97 aa11.63□□□□□ -0.55
LDLR-206ENST00000557958 PGPEP1Q9NXJ5 209 aa11.63□□□□□ -0.55
LDLR-206ENST00000557958 SPANXCQ9NY87 97 aa11.63□□□□□ -0.55
LDLR-206ENST00000557958 SCGB1A1P11684 91 aa11.62□□□□□ -0.55
LDLR-206ENST00000557958 HERV-K104P63124 156 aa11.62□□□□□ -0.55
LDLR-206ENST00000557958 IGHV3OR16-9A0A0B4J2B5 98 aa11.61□□□□□ -0.55
LDLR-206ENST00000557958 Q9H8V8 135 aa11.61□□□□□ -0.55
LDLR-206ENST00000557958 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.61□□□□□ -0.55
LDLR-206ENST00000557958 A0A087WZ39 114 aa11.6□□□□□ -0.55
LDLR-206ENST00000557958 NANOS2P60321 138 aaKnown RBP11.6□□□□□ -0.55
LDLR-206ENST00000557958 MIAQ16674 131 aa11.6□□□□□ -0.55
LDLR-206ENST00000557958 Q6ZTC4 211 aa11.6□□□□□ -0.55
LDLR-206ENST00000557958 C11orf45Q8TAV5 145 aa11.6□□□□□ -0.55
LDLR-206ENST00000557958 COPS9Q8WXC6 57 aa11.6□□□□□ -0.55
LDLR-206ENST00000557958 LITAFQ99732 161 aa11.6□□□□□ -0.55
LDLR-206ENST00000557958 B9D2Q9BPU9 175 aa11.6□□□□□ -0.55
LDLR-206ENST00000557958 TSPAN13O95857 204 aa11.59□□□□□ -0.55
LDLR-206ENST00000557958 ANGP03950 147 aaKnown RBP11.59□□□□□ -0.55
LDLR-206ENST00000557958 SFTA2Q6UW10 78 aa11.59□□□□□ -0.55
LDLR-206ENST00000557958 PRSS2P07478 247 aa11.59□□□□□ -0.55
LDLR-206ENST00000557958 IFITM1P13164 125 aa11.59□□□□□ -0.55
LDLR-206ENST00000557958 MUSTN1Q8IVN3 82 aa11.59□□□□□ -0.55
LDLR-206ENST00000557958 COX7B2Q8TF08 81 aa11.59□□□□□ -0.55
LDLR-206ENST00000557958 APOMO95445 188 aa11.58□□□□□ -0.56
LDLR-206ENST00000557958 ETDBQ3ZM63 59 aa11.58□□□□□ -0.56
LDLR-206ENST00000557958 ZNF625Q96I27 306 aaPredicted RBP11.58□□□□□ -0.56
LDLR-206ENST00000557958 A4D1N5 150 aa11.57□□□□□ -0.56
LDLR-206ENST00000557958 LINC01561Q8N1V8 128 aa11.57□□□□□ -0.56
LDLR-206ENST00000557958 LINC00269Q8N2A0 174 aa11.57□□□□□ -0.56
LDLR-206ENST00000557958 XCL1P47992 114 aa11.57□□□□□ -0.56
LDLR-206ENST00000557958 SIGMAR1Q99720 223 aa11.57□□□□□ -0.56
LDLR-206ENST00000557958 A0A0B4J2C4 111 aa11.56□□□□□ -0.56
LDLR-206ENST00000557958 GAGE12HA6NDE8 117 aa11.56□□□□□ -0.56
LDLR-206ENST00000557958 REG3AQ06141 175 aa11.56□□□□□ -0.56
LDLR-206ENST00000557958 LYPD5Q6UWN5 251 aa11.56□□□□□ -0.56
LDLR-206ENST00000557958 CFC1BP0CG36 223 aa11.55□□□□□ -0.56
LDLR-206ENST00000557958 CFC1P0CG37 223 aa11.55□□□□□ -0.56
LDLR-206ENST00000557958 MEIG1Q5JSS6 88 aa11.55□□□□□ -0.56
LDLR-206ENST00000557958 CLPSL2Q6UWE3 100 aa11.55□□□□□ -0.56
LDLR-206ENST00000557958 TOMM7Q9P0U1 55 aa11.55□□□□□ -0.56
LDLR-206ENST00000557958 PRO1854Q9UHT4 67 aa11.55□□□□□ -0.56
LDLR-206ENST00000557958 DEFB131BA0A096LNP1 70 aa11.55□□□□□ -0.56
LDLR-206ENST00000557958 ADAMTSL4-AS1Q5T5F5 129 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms