RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 ZNF815PA8K554 130 aa4.34□□□□□ -1.71
SYNE1-239ENST00000545694 J3QQQ9 107 aa4.34□□□□□ -1.71
SYNE1-239ENST00000545694 GYPEP15421 78 aa4.34□□□□□ -1.71
SYNE1-239ENST00000545694 GCSHP23434 173 aa4.34□□□□□ -1.71
SYNE1-239ENST00000545694 MRPL23Q16540 153 aaKnown RBP4.34□□□□□ -1.71
SYNE1-239ENST00000545694 SFTA2Q6UW10 78 aa4.34□□□□□ -1.71
SYNE1-239ENST00000545694 SCGB1D4Q6XE38 83 aa4.34□□□□□ -1.71
SYNE1-239ENST00000545694 NTM-AS1Q6ZSK4 140 aa4.34□□□□□ -1.71
SYNE1-239ENST00000545694 FAM104AQ969W3 186 aa4.34□□□□□ -1.71
SYNE1-239ENST00000545694 SPANXB1Q9NS25 103 aaPredicted RBP4.34□□□□□ -1.71
SYNE1-239ENST00000545694 TP73-AS1Q9UF72 201 aa4.34□□□□□ -1.71
SYNE1-239ENST00000545694 Q9UF83 564 aa4.34□□□□□ -1.71
SYNE1-239ENST00000545694 MGAM2Q2M2H8 2515 aa4.34□□□□□ -1.72
SYNE1-239ENST00000545694 KRTAP10-11P60412 298 aa4.33□□□□□ -1.72
SYNE1-239ENST00000545694 Q6ZUT4 128 aa4.33□□□□□ -1.72
SYNE1-239ENST00000545694 CEND1Q8N111 149 aa4.33□□□□□ -1.72
SYNE1-239ENST00000545694 LINC01561Q8N1V8 128 aa4.33□□□□□ -1.72
SYNE1-239ENST00000545694 COPS9Q8WXC6 57 aa4.33□□□□□ -1.72
SYNE1-239ENST00000545694 A0A0J9YXY3 114 aa4.32□□□□□ -1.72
SYNE1-239ENST00000545694 A0A1B0GV90 55 aa4.32□□□□□ -1.72
SYNE1-239ENST00000545694 KRTAP23-1A1A580 65 aa4.32□□□□□ -1.72
SYNE1-239ENST00000545694 TMEM238C9JI98 176 aa4.32□□□□□ -1.72
SYNE1-239ENST00000545694 TIMM17BO60830 172 aa4.32□□□□□ -1.72
SYNE1-239ENST00000545694 SMIM13P0DJ93 91 aa4.32□□□□□ -1.72
SYNE1-239ENST00000545694 LINC00469Q8N7U9 141 aa4.32□□□□□ -1.72
SYNE1-239ENST00000545694 MAPKAPK5-AS1Q8N8E1 139 aa4.32□□□□□ -1.72
SYNE1-239ENST00000545694 VSIG2Q96IQ7 327 aa4.32□□□□□ -1.72
SYNE1-239ENST00000545694 HIST1H4GQ99525 98 aa4.32□□□□□ -1.72
SYNE1-239ENST00000545694 OPRPNQ99935 248 aaPredicted RBP4.32□□□□□ -1.72
SYNE1-239ENST00000545694 CHCHD5Q9BSY4 110 aa4.32□□□□□ -1.72
SYNE1-239ENST00000545694 PPDPFQ9H3Y8 114 aa4.32□□□□□ -1.72
SYNE1-239ENST00000545694 COX11Q9Y6N1 276 aa4.32□□□□□ -1.72
SYNE1-239ENST00000545694 ICOSQ9Y6W8 199 aa4.32□□□□□ -1.72
SYNE1-239ENST00000545694 IGLV5-39A0A0G2JS06 123 aa4.31□□□□□ -1.72
SYNE1-239ENST00000545694 A0A0J9YY99 117 aa4.31□□□□□ -1.72
SYNE1-239ENST00000545694 ZNF561-AS1K7EIQ3 104 aa4.31□□□□□ -1.72
SYNE1-239ENST00000545694 IGHV3-30-3P0DP02 117 aa4.31□□□□□ -1.72
SYNE1-239ENST00000545694 PTTG1IPP53801 180 aa4.31□□□□□ -1.72
SYNE1-239ENST00000545694 SRSF9Q13242 221 aaKnown RBP eCLIP4.31□□□□□ -1.72
SYNE1-239ENST00000545694 CIRBPQ14011 172 aaKnown RBP4.31□□□□□ -1.72
SYNE1-239ENST00000545694 LINC00242Q5T6M2 205 aa4.31□□□□□ -1.72
SYNE1-239ENST00000545694 KPRPQ5T749 579 aaPredicted RBP4.31□□□□□ -1.72
SYNE1-239ENST00000545694 ZFAND6Q6FIF0 208 aa4.31□□□□□ -1.72
SYNE1-239ENST00000545694 DEFB104AQ8WTQ1 72 aa4.31□□□□□ -1.72
SYNE1-239ENST00000545694 LOC100131303A0A0U1RQF7 123 aa4.3□□□□□ -1.72
SYNE1-239ENST00000545694 A0A1B0GWB2 263 aa4.3□□□□□ -1.72
SYNE1-239ENST00000545694 F5H768 121 aa4.3□□□□□ -1.72
SYNE1-239ENST00000545694 TAX1BP3O14907 124 aa4.3□□□□□ -1.72
SYNE1-239ENST00000545694 NDUFA1O15239 70 aa4.3□□□□□ -1.72
SYNE1-239ENST00000545694 IFITM1P13164 125 aa4.3□□□□□ -1.72
SYNE1-239ENST00000545694 HERV-K104P63124 156 aa4.3□□□□□ -1.72
SYNE1-239ENST00000545694 RPL24P83731 157 aaKnown RBP4.3□□□□□ -1.72
SYNE1-239ENST00000545694 SS18Q15532 418 aa4.3□□□□□ -1.72
SYNE1-239ENST00000545694 LELP1Q5T871 98 aa4.3□□□□□ -1.72
SYNE1-239ENST00000545694 CEMP1Q6PRD7 247 aaPredicted RBP4.3□□□□□ -1.72
SYNE1-239ENST00000545694 NDUFA12Q9UI09 145 aa4.3□□□□□ -1.72
SYNE1-239ENST00000545694 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.29□□□□□ -1.72
SYNE1-239ENST00000545694 TRAV13-1A0A0B4J241 112 aa4.29□□□□□ -1.72
SYNE1-239ENST00000545694 TCTAP57738 103 aa4.29□□□□□ -1.72
SYNE1-239ENST00000545694 GAGE6Q13070 117 aa4.29□□□□□ -1.72
SYNE1-239ENST00000545694 C12orf74Q32Q52 190 aa4.29□□□□□ -1.72
SYNE1-239ENST00000545694 LYRM7Q5U5X0 104 aa4.29□□□□□ -1.72
SYNE1-239ENST00000545694 GTF2H5Q6ZYL4 71 aa4.29□□□□□ -1.72
SYNE1-239ENST00000545694 SPANXDQ9BXN6 97 aa4.29□□□□□ -1.72
SYNE1-239ENST00000545694 TTTY13Q9BZ97 58 aa4.29□□□□□ -1.72
SYNE1-239ENST00000545694 SPANXCQ9NY87 97 aa4.29□□□□□ -1.72
SYNE1-239ENST00000545694 CDKN2A-AS1Q9UH64 79 aa4.29□□□□□ -1.72
SYNE1-239ENST00000545694 CELA1Q9UNI1 258 aa4.29□□□□□ -1.72
SYNE1-239ENST00000545694 A0A087WZ39 114 aa4.28□□□□□ -1.72
SYNE1-239ENST00000545694 IGHV3OR16-9A0A0B4J2B5 98 aa4.28□□□□□ -1.72
SYNE1-239ENST00000545694 SMIM1B2RUZ4 78 aa4.28□□□□□ -1.72
SYNE1-239ENST00000545694 TMEM262E9PQX1 116 aa4.28□□□□□ -1.72
SYNE1-239ENST00000545694 G3V4G9 280 aa4.28□□□□□ -1.72
SYNE1-239ENST00000545694 IGHV3-30P01768 117 aa4.28□□□□□ -1.72
SYNE1-239ENST00000545694 IGHV3-30-5P0DP03 117 aa4.28□□□□□ -1.72
SYNE1-239ENST00000545694 FXYD2P54710 66 aa4.28□□□□□ -1.72
SYNE1-239ENST00000545694 TSPEAR-AS2P59090 65 aa4.28□□□□□ -1.72
SYNE1-239ENST00000545694 RBX1P62877 108 aa4.28□□□□□ -1.72
SYNE1-239ENST00000545694 UBE2V1Q13404 147 aa4.28□□□□□ -1.72
SYNE1-239ENST00000545694 RNASE13Q5GAN3 156 aaKnown RBP4.28□□□□□ -1.72
SYNE1-239ENST00000545694 TM2D3Q9BRN9 247 aa4.28□□□□□ -1.72
SYNE1-239ENST00000545694 A0A096LPF7 62 aa4.27□□□□□ -1.73
SYNE1-239ENST00000545694 TRAV8-4A0A0B4J246 113 aa4.27□□□□□ -1.73
SYNE1-239ENST00000545694 LINC00959A0A1B0GUT2 108 aa4.27□□□□□ -1.73
SYNE1-239ENST00000545694 CYSRT1A8MQ03 144 aa4.27□□□□□ -1.73
SYNE1-239ENST00000545694 DEFB4AO15263 64 aa4.27□□□□□ -1.73
SYNE1-239ENST00000545694 SPINK8P0C7L1 97 aa4.27□□□□□ -1.73
SYNE1-239ENST00000545694 FABP2P12104 132 aa4.27□□□□□ -1.73
SYNE1-239ENST00000545694 CXCL5P42830 114 aa4.27□□□□□ -1.73
SYNE1-239ENST00000545694 VAMP3Q15836 100 aa4.27□□□□□ -1.73
SYNE1-239ENST00000545694 C10orf126Q8N4M7 172 aa4.27□□□□□ -1.73
SYNE1-239ENST00000545694 C15orf53Q8NAA6 179 aa4.27□□□□□ -1.73
SYNE1-239ENST00000545694 C11orf45Q8TAV5 145 aa4.27□□□□□ -1.73
SYNE1-239ENST00000545694 NHP2Q9NX24 153 aaKnown RBP4.27□□□□□ -1.73
SYNE1-239ENST00000545694 TENM3Q9P273 2699 aa4.27□□□□□ -1.73
SYNE1-239ENST00000545694 IGLV4-60A0A075B6I1 120 aa4.26□□□□□ -1.73
SYNE1-239ENST00000545694 TRAV8-3A0A0A6YYJ7 113 aa4.26□□□□□ -1.73
SYNE1-239ENST00000545694 TRAV10A0A0B4J240 114 aa4.26□□□□□ -1.73
SYNE1-239ENST00000545694 A0A0B4J2C4 111 aa4.26□□□□□ -1.73
SYNE1-239ENST00000545694 COX6A2Q02221 97 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms