RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 FOXI1Q12951 378 aa12.7□□□□□ -0.38
VIM-209ENST00000544301 CRLF1O75462 422 aa12.7□□□□□ -0.38
VIM-209ENST00000544301 OTOGQ6ZRI0 2925 aa12.7□□□□□ -0.38
VIM-209ENST00000544301 TRBV30A0A0K0K1B3 111 aa12.69□□□□□ -0.38
VIM-209ENST00000544301 CIRBPQ14011 172 aaKnown RBP12.69□□□□□ -0.38
VIM-209ENST00000544301 TRIAP1O43715 76 aa12.68□□□□□ -0.38
VIM-209ENST00000544301 GAGE6Q13070 117 aa12.68□□□□□ -0.38
VIM-209ENST00000544301 KIR2DL5BQ8NHK3 375 aa12.68□□□□□ -0.38
VIM-209ENST00000544301 TRBV6-8A0A0A6YYG3 113 aa12.67□□□□□ -0.38
VIM-209ENST00000544301 GAGE12HA6NDE8 117 aa12.67□□□□□ -0.38
VIM-209ENST00000544301 DEFB130BP0DP73 79 aa12.67□□□□□ -0.38
VIM-209ENST00000544301 DEFB130AP0DP74 79 aa12.67□□□□□ -0.38
VIM-209ENST00000544301 TEN1Q86WV5 123 aa12.67□□□□□ -0.38
VIM-209ENST00000544301 ZNF625Q96I27 306 aaPredicted RBP12.67□□□□□ -0.38
VIM-209ENST00000544301 VWFP04275 2813 aa12.67□□□□□ -0.38
VIM-209ENST00000544301 LINC00612Q8N6U2 182 aa12.67□□□□□ -0.38
VIM-209ENST00000544301 SPATA3Q8NHX4 192 aa12.67□□□□□ -0.38
VIM-209ENST00000544301 INAFM1C9JVW0 142 aa12.66□□□□□ -0.38
VIM-209ENST00000544301 SPATA25Q9BR10 227 aa12.66□□□□□ -0.38
VIM-209ENST00000544301 ICOSQ9Y6W8 199 aa12.66□□□□□ -0.38
VIM-209ENST00000544301 C9JAW5 83 aa12.65□□□□□ -0.38
VIM-209ENST00000544301 ATXN8Q156A1 80 aa12.65□□□□□ -0.38
VIM-209ENST00000544301 LINC00308Q8TCZ7 52 aa12.65□□□□□ -0.38
VIM-209ENST00000544301 CARD19Q96LW7 228 aa12.65□□□□□ -0.38
VIM-209ENST00000544301 SLC25A20O43772 301 aa12.65□□□□□ -0.38
VIM-209ENST00000544301 X6R8D5 127 aa12.65□□□□□ -0.38
VIM-209ENST00000544301 IGLV4-60A0A075B6I1 120 aa12.64□□□□□ -0.39
VIM-209ENST00000544301 PRIMA1Q86XR5 153 aa12.64□□□□□ -0.39
VIM-209ENST00000544301 PPDPFLQ8WWR9 84 aa12.64□□□□□ -0.39
VIM-209ENST00000544301 A0A0U1RRA0 63 aa12.64□□□□□ -0.39
VIM-209ENST00000544301 CHCHD5Q9BSY4 110 aa12.64□□□□□ -0.39
VIM-209ENST00000544301 M0QXV9 152 aa12.63□□□□□ -0.39
VIM-209ENST00000544301 C9orf66Q5T8R8 295 aa12.63□□□□□ -0.39
VIM-209ENST00000544301 ANKRD29Q8N6D5 301 aa12.63□□□□□ -0.39
VIM-209ENST00000544301 SVIPQ8NHG7 77 aa12.63□□□□□ -0.39
VIM-209ENST00000544301 FN1P02751 2386 aaKnown RBP12.63□□□□□ -0.39
VIM-209ENST00000544301 NOTCH2Q04721 2471 aa12.63□□□□□ -0.39
VIM-209ENST00000544301 RPL13AP40429 203 aaKnown RBP12.62□□□□□ -0.39
VIM-209ENST00000544301 SIGMAR1Q99720 223 aa12.62□□□□□ -0.39
VIM-209ENST00000544301 HERV-K104P63124 156 aa12.62□□□□□ -0.39
VIM-209ENST00000544301 LINC01620Q4KN68 170 aa12.62□□□□□ -0.39
VIM-209ENST00000544301 IGKV3OR2-268A0A0C4DH90 116 aa12.61□□□□□ -0.39
VIM-209ENST00000544301 SMIM9A6NGZ8 99 aa12.61□□□□□ -0.39
VIM-209ENST00000544301 MEIG1Q5JSS6 88 aa12.61□□□□□ -0.39
VIM-209ENST00000544301 NSD1Q96L73 2696 aaPredicted RBP12.61□□□□□ -0.39
VIM-209ENST00000544301 SOSTDC1Q6X4U4 206 aa12.61□□□□□ -0.39
VIM-209ENST00000544301 GYPEP15421 78 aa12.6□□□□□ -0.39
VIM-209ENST00000544301 NBEAL2Q6ZNJ1 2754 aa12.6□□□□□ -0.39
VIM-209ENST00000544301 COX6CP09669 75 aa12.59□□□□□ -0.39
VIM-209ENST00000544301 COPS9Q8WXC6 57 aa12.59□□□□□ -0.39
VIM-209ENST00000544301 TENM1Q9UKZ4 2725 aa12.59□□□□□ -0.39
VIM-209ENST00000544301 COX7B2Q8TF08 81 aa12.58□□□□□ -0.4
VIM-209ENST00000544301 LINC01600Q96MT4 127 aa12.58□□□□□ -0.4
VIM-209ENST00000544301 IGHV3OR16-9A0A0B4J2B5 98 aa12.57□□□□□ -0.4
VIM-209ENST00000544301 TRBV10-2A0A0K0K1G8 114 aa12.56□□□□□ -0.4
VIM-209ENST00000544301 FAM222AQ5U5X8 452 aa12.56□□□□□ -0.4
VIM-209ENST00000544301 PRO0255Q9UI72 69 aa12.56□□□□□ -0.4
VIM-209ENST00000544301 CLEC2BQ92478 149 aa12.56□□□□□ -0.4
VIM-209ENST00000544301 CDIP1Q9H305 208 aa12.56□□□□□ -0.4
VIM-209ENST00000544301 LYRM9A8MSI8 78 aa12.55□□□□□ -0.4
VIM-209ENST00000544301 TOMM7Q9P0U1 55 aa12.55□□□□□ -0.4
VIM-209ENST00000544301 A0A087WZ39 114 aa12.54□□□□□ -0.4
VIM-209ENST00000544301 LST1O00453 97 aa12.54□□□□□ -0.4
VIM-209ENST00000544301 DEFB135Q30KP9 77 aa12.54□□□□□ -0.4
VIM-209ENST00000544301 PPDPFQ9H3Y8 114 aa12.54□□□□□ -0.4
VIM-209ENST00000544301 LINC00959A0A1B0GUT2 108 aa12.53□□□□□ -0.4
VIM-209ENST00000544301 NTN5Q8WTR8 489 aaPredicted RBP12.53□□□□□ -0.4
VIM-209ENST00000544301 CITED1Q99966 193 aa12.53□□□□□ -0.4
VIM-209ENST00000544301 TMEM262E9PQX1 116 aa12.52□□□□□ -0.41
VIM-209ENST00000544301 DEFB4AO15263 64 aa12.52□□□□□ -0.41
VIM-209ENST00000544301 APOC4P55056 127 aa12.52□□□□□ -0.41
VIM-209ENST00000544301 C5orf38Q86SI9 138 aa12.52□□□□□ -0.41
VIM-209ENST00000544301 HIVEP1P15822 2718 aa12.51□□□□□ -0.41
VIM-209ENST00000544301 A0A096LPF7 62 aa12.51□□□□□ -0.41
VIM-209ENST00000544301 A0A1B0GUV1 79 aa12.51□□□□□ -0.41
VIM-209ENST00000544301 PAX4O43316 350 aa12.51□□□□□ -0.41
VIM-209ENST00000544301 SCGB1A1P11684 91 aa12.51□□□□□ -0.41
VIM-209ENST00000544301 SHISA2Q6UWI4 295 aa12.5□□□□□ -0.41
VIM-209ENST00000544301 IGHV4-28A0A0C4DH34 117 aa12.5□□□□□ -0.41
VIM-209ENST00000544301 C2orf82Q6UX34 121 aa12.5□□□□□ -0.41
VIM-209ENST00000544301 MIR7-3HGQ8N6C7 128 aa12.49□□□□□ -0.41
VIM-209ENST00000544301 H3BT86 120 aa12.49□□□□□ -0.41
VIM-209ENST00000544301 TEX49A0A1B0GTD5 131 aa12.47□□□□□ -0.41
VIM-209ENST00000544301 COX7A2LO14548 114 aa12.47□□□□□ -0.41
VIM-209ENST00000544301 XCL1P47992 114 aa12.47□□□□□ -0.41
VIM-209ENST00000544301 SS18Q15532 418 aa12.47□□□□□ -0.41
VIM-209ENST00000544301 LINC00158P58513 81 aa12.46□□□□□ -0.41
VIM-209ENST00000544301 ATRQ13535 2644 aa12.46□□□□□ -0.42
VIM-209ENST00000544301 TEP1Q99973 2627 aaKnown RBP12.46□□□□□ -0.42
VIM-209ENST00000544301 DAD1P61803 113 aa12.46□□□□□ -0.42
VIM-209ENST00000544301 UBE2WQ96B02 151 aa12.46□□□□□ -0.42
VIM-209ENST00000544301 TRRAPQ9Y4A5 3859 aa12.45□□□□□ -0.42
VIM-209ENST00000544301 IBA57-AS1B1ANH7 110 aa12.45□□□□□ -0.42
VIM-209ENST00000544301 CLPSL2Q6UWE3 100 aa12.45□□□□□ -0.42
VIM-209ENST00000544301 Q8NAQ8 132 aa12.45□□□□□ -0.42
VIM-209ENST00000544301 XGP55808 180 aa12.44□□□□□ -0.42
VIM-209ENST00000544301 WFDC9Q8NEX5 89 aa12.44□□□□□ -0.42
VIM-209ENST00000544301 CELA1Q9UNI1 258 aa12.44□□□□□ -0.42
VIM-209ENST00000544301 TRAV13-2A0A0B4J235 113 aa12.44□□□□□ -0.42
VIM-209ENST00000544301 MT-ATP8P03928 68 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms