RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 C12orf57Q99622 126 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 GTSF1LQ9H1H1 148 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 MRPS16Q9Y3D3 137 aaKnown RBP3.48□□□□□ -1.85
CLIP1-217ENST00000543205 LYSTQ99698 3801 aa3.47□□□□□ -1.85
CLIP1-217ENST00000543205 DNAH1Q9P2D7 4330 aa3.47□□□□□ -1.85
CLIP1-217ENST00000543205 A0A087WWC5 75 aa3.47□□□□□ -1.85
CLIP1-217ENST00000543205 TRAV26-2A0A0B4J265 109 aa3.47□□□□□ -1.85
CLIP1-217ENST00000543205 LINC00694P0DN24 101 aa3.47□□□□□ -1.85
CLIP1-217ENST00000543205 ATP5L2Q7Z4Y8 100 aa3.47□□□□□ -1.85
CLIP1-217ENST00000543205 FAM19A3Q7Z5A8 133 aa3.47□□□□□ -1.85
CLIP1-217ENST00000543205 AMN1Q8IY45 258 aa3.47□□□□□ -1.85
CLIP1-217ENST00000543205 NKAPP1Q8N9T2 125 aa3.47□□□□□ -1.85
CLIP1-217ENST00000543205 DNAJC30Q96LL9 226 aa3.47□□□□□ -1.85
CLIP1-217ENST00000543205 VPS25Q9BRG1 176 aa3.47□□□□□ -1.85
CLIP1-217ENST00000543205 NIT2Q9NQR4 276 aa3.47□□□□□ -1.85
CLIP1-217ENST00000543205 TMEM242Q9NWH2 141 aa3.47□□□□□ -1.85
CLIP1-217ENST00000543205 HMCN1Q96RW7 5635 aa3.47□□□□□ -1.85
CLIP1-217ENST00000543205 NACAE9PAV3 2078 aa3.47□□□□□ -1.85
CLIP1-217ENST00000543205 RYR1P21817 5038 aa3.47□□□□□ -1.85
CLIP1-217ENST00000543205 LINC01547P58512 204 aaPredicted RBP3.46□□□□□ -1.86
CLIP1-217ENST00000543205 UBE2D3P61077 147 aa3.46□□□□□ -1.86
CLIP1-217ENST00000543205 UBE2D2P62837 147 aa3.46□□□□□ -1.86
CLIP1-217ENST00000543205 DAZ4Q86SG3 579 aaKnown RBP3.46□□□□□ -1.86
CLIP1-217ENST00000543205 FRZBQ92765 325 aa3.46□□□□□ -1.86
CLIP1-217ENST00000543205 UPK3BQ9BT76 320 aa3.46□□□□□ -1.86
CLIP1-217ENST00000543205 DAZ3Q9NR90 486 aaKnown RBP3.46□□□□□ -1.86
CLIP1-217ENST00000543205 PCLOQ9Y6V0 5065 aa3.46□□□□□ -1.86
CLIP1-217ENST00000543205 IGLV2-18A0A075B6J9 118 aa3.46□□□□□ -1.86
CLIP1-217ENST00000543205 TRAV9-1A0A075B6T8 112 aa3.46□□□□□ -1.86
CLIP1-217ENST00000543205 M0R2N4 97 aa3.46□□□□□ -1.86
CLIP1-217ENST00000543205 IGKV2-30P06310 120 aa3.46□□□□□ -1.86
CLIP1-217ENST00000543205 LELP1Q5T871 98 aa3.46□□□□□ -1.86
CLIP1-217ENST00000543205 FAM104BQ5XKR9 115 aa3.46□□□□□ -1.86
CLIP1-217ENST00000543205 DLEU1O43261 78 aa3.45□□□□□ -1.86
CLIP1-217ENST00000543205 PPP1R17O96001 155 aa3.45□□□□□ -1.86
CLIP1-217ENST00000543205 CKS2P33552 79 aa3.45□□□□□ -1.86
CLIP1-217ENST00000543205 MRPL51Q4U2R6 128 aaKnown RBP3.45□□□□□ -1.86
CLIP1-217ENST00000543205 RPL39LQ96EH5 51 aaKnown RBP3.45□□□□□ -1.86
CLIP1-217ENST00000543205 ST20Q9HBF5 79 aa3.45□□□□□ -1.86
CLIP1-217ENST00000543205 SACSQ9NZJ4 4579 aa3.45□□□□□ -1.86
CLIP1-217ENST00000543205 TRAV9-2A0A087WT02 112 aa3.44□□□□□ -1.86
CLIP1-217ENST00000543205 A0A087WX48 190 aa3.44□□□□□ -1.86
CLIP1-217ENST00000543205 TRAV8-3A0A0A6YYJ7 113 aa3.44□□□□□ -1.86
CLIP1-217ENST00000543205 NBDYA0A0U1RRE5 68 aa3.44□□□□□ -1.86
CLIP1-217ENST00000543205 NCR2O95944 276 aa3.44□□□□□ -1.86
CLIP1-217ENST00000543205 Q6ZRU5 148 aa3.44□□□□□ -1.86
CLIP1-217ENST00000543205 NOTCH2NLQ7Z3S9 236 aa3.44□□□□□ -1.86
CLIP1-217ENST00000543205 WFDC10BQ8IUB3 73 aa3.44□□□□□ -1.86
CLIP1-217ENST00000543205 TMEM243Q9BU79 118 aa3.44□□□□□ -1.86
CLIP1-217ENST00000543205 DHRS4-AS1Q9P1J3 65 aa3.44□□□□□ -1.86
CLIP1-217ENST00000543205 HERC2O95714 4834 aa3.44□□□□□ -1.86
CLIP1-217ENST00000543205 IGLV4-3A0A075B6K6 122 aa3.44□□□□□ -1.86
CLIP1-217ENST00000543205 TRBV25-1A0A075B6N4 114 aa3.44□□□□□ -1.86
CLIP1-217ENST00000543205 TRBV6-8A0A0A6YYG3 113 aa3.44□□□□□ -1.86
CLIP1-217ENST00000543205 IGHV1-24A0A0C4DH33 117 aa3.44□□□□□ -1.86
CLIP1-217ENST00000543205 SDHAF1A6NFY7 115 aa3.44□□□□□ -1.86
CLIP1-217ENST00000543205 D6R8Y8 96 aa3.44□□□□□ -1.86
CLIP1-217ENST00000543205 PSPHP1O15172 72 aa3.44□□□□□ -1.86
CLIP1-217ENST00000543205 GAS8-AS1O95177 125 aa3.44□□□□□ -1.86
CLIP1-217ENST00000543205 TMEM136Q6ZRR5 245 aa3.44□□□□□ -1.86
CLIP1-217ENST00000543205 CHCHD5Q9BSY4 110 aa3.44□□□□□ -1.86
CLIP1-217ENST00000543205 IGHV6-1A0A0B4J1U7 121 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 TRBV6-5A0A0K0K1A5 114 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 LOC389332A0A1B0GUA5 103 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 TMEM262E9PQX1 116 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 I3L3M4 83 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 IGHV3-30P01768 117 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 IGHV3-33P01772 117 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 DNAH10OSP0CZ25 163 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 IGHV3-30-3P0DP02 117 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 IGHV3-30-5P0DP03 117 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 RPS10P46783 165 aaKnown RBP3.43□□□□□ -1.86
CLIP1-217ENST00000543205 PKIAP61925 76 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 ADAMTSL4-AS1Q5T5F5 129 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 ORMDL3Q8N138 153 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 C10orf126Q8N4M7 172 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 DEFB104AQ8WTQ1 72 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 UBE2L6O14933 153 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 HLA-DQA1P01909 254 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 APCSP02743 223 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 CHTF8P0CG12 524 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 PSMB2P49721 201 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 ELOBQ15370 118 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 IQCJQ1A5X6 159 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 LINC01556Q5JQF7 62 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 C1orf134Q5TEV5 83 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 Q6ZR54 194 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 NTM-AS1Q6ZSK4 140 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 PRELID3AQ96N28 172 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 C20orf78Q9BR46 151 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 TMEM70Q9BUB7 260 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 SMCO4Q9NRQ5 59 aa3.43□□□□□ -1.86
CLIP1-217ENST00000543205 ALMS1Q8TCU4 4167 aa3.42□□□□□ -1.86
CLIP1-217ENST00000543205 TRBV24-1A0A075B6N3 115 aa3.42□□□□□ -1.86
CLIP1-217ENST00000543205 TRBV27A0A0K0K1C4 114 aa3.42□□□□□ -1.86
CLIP1-217ENST00000543205 PHOX2AO14813 284 aa3.42□□□□□ -1.86
CLIP1-217ENST00000543205 NPYP01303 97 aa3.42□□□□□ -1.86
CLIP1-217ENST00000543205 MT-ND6P03923 174 aa3.42□□□□□ -1.86
CLIP1-217ENST00000543205 FCER1GP30273 86 aa3.42□□□□□ -1.86
CLIP1-217ENST00000543205 POLR2KP53803 58 aaKnown RBP3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms