RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 CCL18P55774 89 aa6.05□□□□□ -1.44
LIMCH1-216ENST00000512820 CHCHD10Q8WYQ3 142 aaPredicted RBP6.05□□□□□ -1.44
LIMCH1-216ENST00000512820 REG3AQ06141 175 aa6.05□□□□□ -1.44
LIMCH1-216ENST00000512820 SBSPONQ8IVN8 264 aa6.04□□□□□ -1.44
LIMCH1-216ENST00000512820 SETD2Q9BYW2 2564 aaPredicted RBP6.04□□□□□ -1.44
LIMCH1-216ENST00000512820 VCANP13611 3396 aa6.04□□□□□ -1.44
LIMCH1-216ENST00000512820 PRRC2AP48634 2157 aaKnown RBP6.04□□□□□ -1.44
LIMCH1-216ENST00000512820 TRAV23DV6A0A075B6W5 121 aa6.04□□□□□ -1.44
LIMCH1-216ENST00000512820 LINC00959A0A1B0GUT2 108 aa6.04□□□□□ -1.44
LIMCH1-216ENST00000512820 RPL18AQ02543 176 aaKnown RBP6.04□□□□□ -1.44
LIMCH1-216ENST00000512820 CSDC2Q9Y534 153 aaKnown RBP6.04□□□□□ -1.44
LIMCH1-216ENST00000512820 SPTBN4Q9H254 2564 aa6.03□□□□□ -1.44
LIMCH1-216ENST00000512820 IGKV2D-24A0A075B6R9 120 aa6.03□□□□□ -1.44
LIMCH1-216ENST00000512820 Q9UF83 564 aa6.03□□□□□ -1.44
LIMCH1-216ENST00000512820 F8WEM9 126 aa6.03□□□□□ -1.44
LIMCH1-216ENST00000512820 RPL28P46779 137 aaKnown RBP6.03□□□□□ -1.44
LIMCH1-216ENST00000512820 DEFB105AQ8NG35 78 aa6.03□□□□□ -1.44
LIMCH1-216ENST00000512820 DIRC1Q969H9 104 aa6.03□□□□□ -1.44
LIMCH1-216ENST00000512820 LAMA1P25391 3075 aa6.03□□□□□ -1.44
LIMCH1-216ENST00000512820 ABCA2Q9BZC7 2435 aa6.03□□□□□ -1.44
LIMCH1-216ENST00000512820 C6orf99Q4VX62 202 aa6.02□□□□□ -1.45
LIMCH1-216ENST00000512820 BBC3Q96PG8 261 aaPredicted RBP6.02□□□□□ -1.45
LIMCH1-216ENST00000512820 H3BQ85 93 aa6.02□□□□□ -1.45
LIMCH1-216ENST00000512820 ZNF575Q86XF7 245 aa6.02□□□□□ -1.45
LIMCH1-216ENST00000512820 C11orf72Q8NBR9 251 aa6.02□□□□□ -1.45
LIMCH1-216ENST00000512820 LINC01006Q8NI28 216 aa6.02□□□□□ -1.45
LIMCH1-216ENST00000512820 UPK3BQ9BT76 320 aa6.02□□□□□ -1.45
LIMCH1-216ENST00000512820 C1orf43Q9BWL3 253 aa6.02□□□□□ -1.45
LIMCH1-216ENST00000512820 MYO18BQ8IUG5 2567 aa6.02□□□□□ -1.45
LIMCH1-216ENST00000512820 IGLV4-60A0A075B6I1 120 aa6.01□□□□□ -1.45
LIMCH1-216ENST00000512820 ENHOQ6UWT2 76 aa6.01□□□□□ -1.45
LIMCH1-216ENST00000512820 SMIM9A6NGZ8 99 aa6.01□□□□□ -1.45
LIMCH1-216ENST00000512820 J3QKU1 62 aa6.01□□□□□ -1.45
LIMCH1-216ENST00000512820 COX7CP15954 63 aa6.01□□□□□ -1.45
LIMCH1-216ENST00000512820 IGLV5-39A0A0G2JS06 123 aa6.01□□□□□ -1.45
LIMCH1-216ENST00000512820 LYRM9A8MSI8 78 aa6.01□□□□□ -1.45
LIMCH1-216ENST00000512820 A0A087WYN8 130 aa6□□□□□ -1.45
LIMCH1-216ENST00000512820 USP17L23D6RBM5 183 aa6□□□□□ -1.45
LIMCH1-216ENST00000512820 PDE6GP18545 87 aa6□□□□□ -1.45
LIMCH1-216ENST00000512820 KRTAP10-9P60411 292 aa6□□□□□ -1.45
LIMCH1-216ENST00000512820 ATP5EP2Q5VTU8 51 aa6□□□□□ -1.45
LIMCH1-216ENST00000512820 CD164L2Q6UWJ8 174 aa6□□□□□ -1.45
LIMCH1-216ENST00000512820 A0A087WZ39 114 aa6□□□□□ -1.45
LIMCH1-216ENST00000512820 COX7BP24311 80 aa6□□□□□ -1.45
LIMCH1-216ENST00000512820 C20orf197Q8N268 126 aa6□□□□□ -1.45
LIMCH1-216ENST00000512820 SERP2Q8N6R1 65 aa6□□□□□ -1.45
LIMCH1-216ENST00000512820 LINC00482Q8N8I6 264 aa6□□□□□ -1.45
LIMCH1-216ENST00000512820 VPS13AQ96RL7 3174 aa5.99□□□□□ -1.45
LIMCH1-216ENST00000512820 Q8N2B8 174 aa5.99□□□□□ -1.45
LIMCH1-216ENST00000512820 NREPQ16612 68 aa5.99□□□□□ -1.45
LIMCH1-216ENST00000512820 Q8IZM0 81 aa5.99□□□□□ -1.45
LIMCH1-216ENST00000512820 ABCA12Q86UK0 2595 aa5.99□□□□□ -1.45
LIMCH1-216ENST00000512820 HIGD2BQ4VC39 106 aa5.98□□□□□ -1.45
LIMCH1-216ENST00000512820 Q6JHZ5 121 aa5.98□□□□□ -1.45
LIMCH1-216ENST00000512820 LINC00526Q96FQ7 95 aa5.98□□□□□ -1.45
LIMCH1-216ENST00000512820 LITAFQ99732 161 aa5.98□□□□□ -1.45
LIMCH1-216ENST00000512820 XAGE1AQ9HD64 81 aa5.98□□□□□ -1.45
LIMCH1-216ENST00000512820 IGLV5-45A0A087WSX0 123 aa5.98□□□□□ -1.45
LIMCH1-216ENST00000512820 FHL3Q13643 280 aa5.98□□□□□ -1.45
LIMCH1-216ENST00000512820 LINC00337Q8N6G1 96 aa5.98□□□□□ -1.45
LIMCH1-216ENST00000512820 POLQO75417 2590 aa5.98□□□□□ -1.45
LIMCH1-216ENST00000512820 FHL2Q14192 279 aa5.98□□□□□ -1.45
LIMCH1-216ENST00000512820 NTM-AS1Q6ZSK4 140 aa5.98□□□□□ -1.45
LIMCH1-216ENST00000512820 DEFB121Q5J5C9 76 aa5.97□□□□□ -1.45
LIMCH1-216ENST00000512820 IGHV4-28A0A0C4DH34 117 aa5.97□□□□□ -1.45
LIMCH1-216ENST00000512820 TRBV7-7A0A0K0K1E9 115 aa5.97□□□□□ -1.45
LIMCH1-216ENST00000512820 FUSP35637 526 aaKnown RBP eCLIP5.97□□□□□ -1.45
LIMCH1-216ENST00000512820 FN1P02751 2386 aaKnown RBP5.97□□□□□ -1.45
LIMCH1-216ENST00000512820 WDFY4Q6ZS81 3184 aa5.97□□□□□ -1.45
LIMCH1-216ENST00000512820 PSCAO43653 123 aa5.97□□□□□ -1.45
LIMCH1-216ENST00000512820 PRR3P79522 188 aaKnown RBP5.97□□□□□ -1.45
LIMCH1-216ENST00000512820 SOSTDC1Q6X4U4 206 aa5.97□□□□□ -1.45
LIMCH1-216ENST00000512820 A0A087WVE0 104 aa5.96□□□□□ -1.45
LIMCH1-216ENST00000512820 ETDCA0A1B0GVM5 59 aa5.96□□□□□ -1.45
LIMCH1-216ENST00000512820 ZNF843Q8N446 348 aa5.96□□□□□ -1.46
LIMCH1-216ENST00000512820 WFDC9Q8NEX5 89 aa5.96□□□□□ -1.46
LIMCH1-216ENST00000512820 IGLV1-51P01701 117 aa5.96□□□□□ -1.46
LIMCH1-216ENST00000512820 CCKP06307 115 aa5.96□□□□□ -1.46
LIMCH1-216ENST00000512820 PLA2G2AP14555 144 aa5.96□□□□□ -1.46
LIMCH1-216ENST00000512820 Q6ZQY7 126 aa5.96□□□□□ -1.46
LIMCH1-216ENST00000512820 COX17Q14061 63 aa5.96□□□□□ -1.46
LIMCH1-216ENST00000512820 SHISA2Q6UWI4 295 aa5.96□□□□□ -1.46
LIMCH1-216ENST00000512820 SCXQ7RTU7 201 aa5.95□□□□□ -1.46
LIMCH1-216ENST00000512820 UBE2DNLQ8IWF7 75 aa5.95□□□□□ -1.46
LIMCH1-216ENST00000512820 TMEM258P61165 79 aa5.95□□□□□ -1.46
LIMCH1-216ENST00000512820 C9orf116Q5BN46 136 aaPredicted RBP5.95□□□□□ -1.46
LIMCH1-216ENST00000512820 Q8N814 137 aa5.95□□□□□ -1.46
LIMCH1-216ENST00000512820 RMI2Q96E14 147 aa5.95□□□□□ -1.46
LIMCH1-216ENST00000512820 KLK5Q9Y337 293 aaPredicted RBP5.95□□□□□ -1.46
LIMCH1-216ENST00000512820 UBE2BP63146 152 aa5.94□□□□□ -1.46
LIMCH1-216ENST00000512820 CELSR3Q9NYQ7 3312 aa5.94□□□□□ -1.46
LIMCH1-216ENST00000512820 LRRK2Q5S007 2527 aa5.94□□□□□ -1.46
LIMCH1-216ENST00000512820 MUC4Q99102 2169 aa5.94□□□□□ -1.46
LIMCH1-216ENST00000512820 FAM218AQ96MZ4 157 aa5.94□□□□□ -1.46
LIMCH1-216ENST00000512820 LINC00846Q9NV44 126 aa5.93□□□□□ -1.46
LIMCH1-216ENST00000512820 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.93□□□□□ -1.46
LIMCH1-216ENST00000512820 KIR2DL5BQ8NHK3 375 aa5.93□□□□□ -1.46
LIMCH1-216ENST00000512820 MGAQ8IWI9 3026 aa5.93□□□□□ -1.46
LIMCH1-216ENST00000512820 IGHV3OR16-9A0A0B4J2B5 98 aa5.93□□□□□ -1.46
LIMCH1-216ENST00000512820 FAM236DA0A1B0GTK5 79 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms