RNA–Protein interactions for RNA: ENST00000498751.1

SYNE1-231, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 578 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-231ENST00000498751 DEFB130AP0DP74 79 aa5.32□□□□□ -1.56
SYNE1-231ENST00000498751 GYPEP15421 78 aa5.32□□□□□ -1.56
SYNE1-231ENST00000498751 DAD1P61803 113 aa5.32□□□□□ -1.56
SYNE1-231ENST00000498751 KPRPQ5T749 579 aaPredicted RBP5.32□□□□□ -1.56
SYNE1-231ENST00000498751 SFTA2Q6UW10 78 aa5.32□□□□□ -1.56
SYNE1-231ENST00000498751 C10orf126Q8N4M7 172 aa5.32□□□□□ -1.56
SYNE1-231ENST00000498751 HIST1H4GQ99525 98 aa5.32□□□□□ -1.56
SYNE1-231ENST00000498751 LITAFQ99732 161 aa5.32□□□□□ -1.56
SYNE1-231ENST00000498751 GEMIN7Q9H840 131 aaKnown RBP5.32□□□□□ -1.56
SYNE1-231ENST00000498751 CDKN2A-AS1Q9UH64 79 aa5.32□□□□□ -1.56
SYNE1-231ENST00000498751 IGHV3OR16-9A0A0B4J2B5 98 aa5.31□□□□□ -1.56
SYNE1-231ENST00000498751 SMIM1B2RUZ4 78 aa5.31□□□□□ -1.56
SYNE1-231ENST00000498751 TMEM238C9JI98 176 aa5.31□□□□□ -1.56
SYNE1-231ENST00000498751 NDUFA1O15239 70 aa5.31□□□□□ -1.56
SYNE1-231ENST00000498751 GCSHP23434 173 aa5.31□□□□□ -1.56
SYNE1-231ENST00000498751 MRPL23Q16540 153 aaKnown RBP5.31□□□□□ -1.56
SYNE1-231ENST00000498751 AMMECR1LQ6DCA0 310 aa5.31□□□□□ -1.56
SYNE1-231ENST00000498751 SCGB1D4Q6XE38 83 aa5.31□□□□□ -1.56
SYNE1-231ENST00000498751 IFITM1P13164 125 aa5.3□□□□□ -1.56
SYNE1-231ENST00000498751 TCTAP57738 103 aa5.3□□□□□ -1.56
SYNE1-231ENST00000498751 HERV-K104P63124 156 aa5.3□□□□□ -1.56
SYNE1-231ENST00000498751 COX6A2Q02221 97 aa5.3□□□□□ -1.56
SYNE1-231ENST00000498751 C12orf74Q32Q52 190 aa5.3□□□□□ -1.56
SYNE1-231ENST00000498751 NDUFA12Q9UI09 145 aa5.3□□□□□ -1.56
SYNE1-231ENST00000498751 CELA1Q9UNI1 258 aa5.3□□□□□ -1.56
SYNE1-231ENST00000498751 TEP1Q99973 2627 aaKnown RBP5.3□□□□□ -1.56
SYNE1-231ENST00000498751 SETD2Q9BYW2 2564 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-231ENST00000498751 IGLV4-60A0A075B6I1 120 aa5.29□□□□□ -1.56
SYNE1-231ENST00000498751 A0A087WZ39 114 aa5.29□□□□□ -1.56
SYNE1-231ENST00000498751 TRAV8-3A0A0A6YYJ7 113 aa5.29□□□□□ -1.56
SYNE1-231ENST00000498751 A0A0B4J2C4 111 aa5.29□□□□□ -1.56
SYNE1-231ENST00000498751 A0A1W2PPM0 123 aa5.29□□□□□ -1.56
SYNE1-231ENST00000498751 LELP1Q5T871 98 aa5.29□□□□□ -1.56
SYNE1-231ENST00000498751 ZNF625Q96I27 306 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-231ENST00000498751 KRTAP4-11Q9BYQ6 195 aa5.29□□□□□ -1.56
SYNE1-231ENST00000498751 FLNBO75369 2602 aaKnown RBP5.29□□□□□ -1.56
SYNE1-231ENST00000498751 K7EP13 123 aa5.28□□□□□ -1.56
SYNE1-231ENST00000498751 RPL24P83731 157 aaKnown RBP5.28□□□□□ -1.56
SYNE1-231ENST00000498751 SRSF9Q13242 221 aaKnown RBP eCLIP5.28□□□□□ -1.56
SYNE1-231ENST00000498751 RNASE13Q5GAN3 156 aaKnown RBP5.28□□□□□ -1.56
SYNE1-231ENST00000498751 GTF2H5Q6ZYL4 71 aa5.28□□□□□ -1.56
SYNE1-231ENST00000498751 CHCHD5Q9BSY4 110 aa5.28□□□□□ -1.56
SYNE1-231ENST00000498751 NHP2Q9NX24 153 aaKnown RBP5.28□□□□□ -1.56
SYNE1-231ENST00000498751 ICOSQ9Y6W8 199 aa5.28□□□□□ -1.56
SYNE1-231ENST00000498751 TENM1Q9UKZ4 2725 aa5.27□□□□□ -1.57
SYNE1-231ENST00000498751 JMJD1CQ15652 2540 aa5.27□□□□□ -1.57
SYNE1-231ENST00000498751 A0A096LPF7 62 aa5.27□□□□□ -1.57
SYNE1-231ENST00000498751 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.27□□□□□ -1.57
SYNE1-231ENST00000498751 LINC00959A0A1B0GUT2 108 aa5.27□□□□□ -1.57
SYNE1-231ENST00000498751 IGLL5B9A064 214 aa5.27□□□□□ -1.57
SYNE1-231ENST00000498751 K7EP34 96 aa5.27□□□□□ -1.57
SYNE1-231ENST00000498751 SPINK8P0C7L1 97 aa5.27□□□□□ -1.57
SYNE1-231ENST00000498751 RBX1P62877 108 aa5.27□□□□□ -1.57
SYNE1-231ENST00000498751 MIAQ16674 131 aa5.27□□□□□ -1.57
SYNE1-231ENST00000498751 COPS9Q8WXC6 57 aa5.27□□□□□ -1.57
SYNE1-231ENST00000498751 TM2D3Q9BRN9 247 aa5.27□□□□□ -1.57
SYNE1-231ENST00000498751 PRR34Q9NV39 138 aa5.27□□□□□ -1.57
SYNE1-231ENST00000498751 TRAV13-1A0A0B4J241 112 aa5.26□□□□□ -1.57
SYNE1-231ENST00000498751 G3V4G9 280 aa5.26□□□□□ -1.57
SYNE1-231ENST00000498751 H3BUT2 72 aa5.26□□□□□ -1.57
SYNE1-231ENST00000498751 FABP2P12104 132 aa5.26□□□□□ -1.57
SYNE1-231ENST00000498751 GAGE6Q13070 117 aa5.26□□□□□ -1.57
SYNE1-231ENST00000498751 VAMP3Q15836 100 aa5.26□□□□□ -1.57
SYNE1-231ENST00000498751 VWFP04275 2813 aa5.25□□□□□ -1.57
SYNE1-231ENST00000498751 NIPBLQ6KC79 2804 aaeCLIP5.25□□□□□ -1.57
SYNE1-231ENST00000498751 ATRQ13535 2644 aa5.25□□□□□ -1.57
SYNE1-231ENST00000498751 GAGE10A6NGK3 116 aa5.25□□□□□ -1.57
SYNE1-231ENST00000498751 CFC1BP0CG36 223 aa5.25□□□□□ -1.57
SYNE1-231ENST00000498751 CFC1P0CG37 223 aa5.25□□□□□ -1.57
SYNE1-231ENST00000498751 CIRBPQ14011 172 aaKnown RBP5.25□□□□□ -1.57
SYNE1-231ENST00000498751 SS18Q15532 418 aa5.25□□□□□ -1.57
SYNE1-231ENST00000498751 MUC7Q8TAX7 377 aa5.25□□□□□ -1.57
SYNE1-231ENST00000498751 IGHV3-64A0A075B6Q5 118 aa5.24□□□□□ -1.57
SYNE1-231ENST00000498751 LOC107984156A0A0G2JMH3 177 aa5.24□□□□□ -1.57
SYNE1-231ENST00000498751 A4D1N5 150 aa5.24□□□□□ -1.57
SYNE1-231ENST00000498751 DEFB4AO15263 64 aa5.24□□□□□ -1.57
SYNE1-231ENST00000498751 CXCL5P42830 114 aa5.24□□□□□ -1.57
SYNE1-231ENST00000498751 LYRM7Q5U5X0 104 aa5.24□□□□□ -1.57
SYNE1-231ENST00000498751 CD164L2Q6UWJ8 174 aa5.24□□□□□ -1.57
SYNE1-231ENST00000498751 MUSTN1Q8IVN3 82 aa5.24□□□□□ -1.57
SYNE1-231ENST00000498751 ARL17AQ8IVW1 177 aa5.24□□□□□ -1.57
SYNE1-231ENST00000498751 Q8IZM0 81 aa5.24□□□□□ -1.57
SYNE1-231ENST00000498751 LINC01600Q96MT4 127 aa5.24□□□□□ -1.57
SYNE1-231ENST00000498751 SPATA25Q9BR10 227 aa5.24□□□□□ -1.57
SYNE1-231ENST00000498751 Q9H8V8 135 aa5.24□□□□□ -1.57
SYNE1-231ENST00000498751 PRO1854Q9UHT4 67 aa5.24□□□□□ -1.57
SYNE1-231ENST00000498751 NOTCH3Q9UM47 2321 aa5.24□□□□□ -1.57
SYNE1-231ENST00000498751 TRBV20-1A0A075B6N2 111 aa5.23□□□□□ -1.57
SYNE1-231ENST00000498751 IBA57-AS1B1ANH7 110 aa5.23□□□□□ -1.57
SYNE1-231ENST00000498751 TSPAN13O95857 204 aa5.23□□□□□ -1.57
SYNE1-231ENST00000498751 IGHV3-33P01772 117 aa5.23□□□□□ -1.57
SYNE1-231ENST00000498751 ADAMTSL4-AS1Q5T5F5 129 aa5.23□□□□□ -1.57
SYNE1-231ENST00000498751 LYPD5Q6UWN5 251 aa5.23□□□□□ -1.57
SYNE1-231ENST00000498751 COX7B2Q8TF08 81 aa5.23□□□□□ -1.57
SYNE1-231ENST00000498751 RAB37Q96AX2 223 aa5.23□□□□□ -1.57
SYNE1-231ENST00000498751 SPCS1Q9Y6A9 102 aa5.23□□□□□ -1.57
SYNE1-231ENST00000498751 TRAV8-4A0A0B4J246 113 aa5.22□□□□□ -1.57
SYNE1-231ENST00000498751 TRBV30A0A0K0K1B3 111 aa5.22□□□□□ -1.57
SYNE1-231ENST00000498751 K7ERJ3 54 aa5.22□□□□□ -1.57
SYNE1-231ENST00000498751 REG3AQ06141 175 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms