RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ZNF32P17041 273 aa3.34□□□□□ -1.87
CCDC88A-209ENST00000456975 IGHV1-2P23083 117 aa3.34□□□□□ -1.87
CCDC88A-209ENST00000456975 MIR17HGQ75NE6 70 aa3.34□□□□□ -1.87
CCDC88A-209ENST00000456975 KRTAP4-9Q9BYQ8 210 aa3.34□□□□□ -1.87
CCDC88A-209ENST00000456975 LINC00574Q9H8X3 128 aa3.34□□□□□ -1.87
CCDC88A-209ENST00000456975 CCL28Q9NRJ3 127 aa3.34□□□□□ -1.87
CCDC88A-209ENST00000456975 SMAD5-AS1Q9Y6J3 95 aa3.34□□□□□ -1.87
CCDC88A-209ENST00000456975 MAP1AP78559 2803 aaPredicted RBP3.34□□□□□ -1.87
CCDC88A-209ENST00000456975 CR1P17927 2039 aa3.34□□□□□ -1.88
CCDC88A-209ENST00000456975 IGKV3D-20A0A0C4DH25 116 aa3.34□□□□□ -1.88
CCDC88A-209ENST00000456975 SDHAF1A6NFY7 115 aa3.34□□□□□ -1.88
CCDC88A-209ENST00000456975 B4DSR2 109 aa3.34□□□□□ -1.88
CCDC88A-209ENST00000456975 K7EQG2 157 aa3.34□□□□□ -1.88
CCDC88A-209ENST00000456975 MRPL33O75394 65 aaKnown RBP3.34□□□□□ -1.88
CCDC88A-209ENST00000456975 LINC01560Q8TB33 94 aa3.34□□□□□ -1.88
CCDC88A-209ENST00000456975 HEATR1Q9H583 2144 aaKnown RBP3.34□□□□□ -1.88
CCDC88A-209ENST00000456975 HRNRQ86YZ3 2850 aaPredicted RBP3.33□□□□□ -1.88
CCDC88A-209ENST00000456975 MPDZO75970 2070 aa3.33□□□□□ -1.88
CCDC88A-209ENST00000456975 IGHV3OR16-10A0A075B7F0 116 aa3.33□□□□□ -1.88
CCDC88A-209ENST00000456975 A0A087WW49 117 aa3.33□□□□□ -1.88
CCDC88A-209ENST00000456975 PIGBOS1A0A0B4J2F0 54 aa3.33□□□□□ -1.88
CCDC88A-209ENST00000456975 DEFB108AA8MXU0 73 aa3.33□□□□□ -1.88
CCDC88A-209ENST00000456975 FSHBP01225 129 aa3.33□□□□□ -1.88
CCDC88A-209ENST00000456975 KRTAP27-1Q3LI81 207 aa3.33□□□□□ -1.88
CCDC88A-209ENST00000456975 Q6ZTC4 211 aa3.33□□□□□ -1.88
CCDC88A-209ENST00000456975 Q96M85 177 aa3.33□□□□□ -1.88
CCDC88A-209ENST00000456975 IGKV3D-7A0A0C4DH55 119 aa3.32□□□□□ -1.88
CCDC88A-209ENST00000456975 hDV103S1A0JD37 113 aa3.32□□□□□ -1.88
CCDC88A-209ENST00000456975 DNAJC9-AS1A6NH13 148 aa3.32□□□□□ -1.88
CCDC88A-209ENST00000456975 SPANXN1Q5VSR9 72 aa3.32□□□□□ -1.88
CCDC88A-209ENST00000456975 Q5VV11 94 aa3.32□□□□□ -1.88
CCDC88A-209ENST00000456975 ZNF826PQ6ZT77 177 aa3.32□□□□□ -1.88
CCDC88A-209ENST00000456975 LYPD6Q86Y78 171 aa3.32□□□□□ -1.88
CCDC88A-209ENST00000456975 KRTAP4-2Q9BYR5 136 aa3.32□□□□□ -1.88
CCDC88A-209ENST00000456975 SNURFQ9Y675 71 aa3.32□□□□□ -1.88
CCDC88A-209ENST00000456975 TLN2Q9Y4G6 2542 aa3.32□□□□□ -1.88
CCDC88A-209ENST00000456975 KRTAP16-1A8MUX0 517 aa3.32□□□□□ -1.88
CCDC88A-209ENST00000456975 HIGD1CA8MV81 97 aa3.32□□□□□ -1.88
CCDC88A-209ENST00000456975 BAALC-AS2P0C853 105 aa3.32□□□□□ -1.88
CCDC88A-209ENST00000456975 C9orf116Q5BN46 136 aaPredicted RBP3.32□□□□□ -1.88
CCDC88A-209ENST00000456975 C10orf128Q5T292 105 aa3.32□□□□□ -1.88
CCDC88A-209ENST00000456975 KLF14Q8TD94 323 aaPredicted RBP3.32□□□□□ -1.88
CCDC88A-209ENST00000456975 RETNLBQ9BQ08 111 aa3.32□□□□□ -1.88
CCDC88A-209ENST00000456975 ZNF580Q9UK33 172 aa3.32□□□□□ -1.88
CCDC88A-209ENST00000456975 DSCAMO60469 2012 aa3.32□□□□□ -1.88
CCDC88A-209ENST00000456975 MXRA5Q9NR99 2828 aa3.32□□□□□ -1.88
CCDC88A-209ENST00000456975 FREM1Q5H8C1 2179 aa3.32□□□□□ -1.88
CCDC88A-209ENST00000456975 VPS13CQ709C8 3753 aa3.32□□□□□ -1.88
CCDC88A-209ENST00000456975 ARID1AO14497 2285 aa3.31□□□□□ -1.88
CCDC88A-209ENST00000456975 IGHV3-16A0A0C4DH30 117 aa3.31□□□□□ -1.88
CCDC88A-209ENST00000456975 TRBV10-3A0A0K0K1G6 114 aa3.31□□□□□ -1.88
CCDC88A-209ENST00000456975 A0A1W2PPR1 153 aa3.31□□□□□ -1.88
CCDC88A-209ENST00000456975 SLPIP03973 132 aa3.31□□□□□ -1.88
CCDC88A-209ENST00000456975 RPL28P46779 137 aaKnown RBP3.31□□□□□ -1.88
CCDC88A-209ENST00000456975 ASB16-AS1Q495Z4 193 aa3.31□□□□□ -1.88
CCDC88A-209ENST00000456975 TMEM263Q8WUH6 116 aaKnown RBP3.31□□□□□ -1.88
CCDC88A-209ENST00000456975 CYP4F30PQ9H0H9 118 aa3.31□□□□□ -1.88
CCDC88A-209ENST00000456975 SONP18583 2426 aaKnown RBP3.31□□□□□ -1.88
CCDC88A-209ENST00000456975 TRAV23DV6A0A075B6W5 121 aa3.31□□□□□ -1.88
CCDC88A-209ENST00000456975 A0A087X002 238 aa3.31□□□□□ -1.88
CCDC88A-209ENST00000456975 ZNF815PA8K554 130 aa3.31□□□□□ -1.88
CCDC88A-209ENST00000456975 IGKV1-39P01597 117 aa3.31□□□□□ -1.88
CCDC88A-209ENST00000456975 IGLV1-44P01699 117 aa3.31□□□□□ -1.88
CCDC88A-209ENST00000456975 TFF1P04155 84 aa3.31□□□□□ -1.88
CCDC88A-209ENST00000456975 IGKV1D-39P04432 117 aa3.31□□□□□ -1.88
CCDC88A-209ENST00000456975 COX6CP09669 75 aa3.31□□□□□ -1.88
CCDC88A-209ENST00000456975 CD24P25063 80 aa3.31□□□□□ -1.88
CCDC88A-209ENST00000456975 ATP5EP2Q5VTU8 51 aa3.31□□□□□ -1.88
CCDC88A-209ENST00000456975 TMEM190Q8WZ59 177 aa3.31□□□□□ -1.88
CCDC88A-209ENST00000456975 TMEM14BQ9NUH8 114 aa3.31□□□□□ -1.88
CCDC88A-209ENST00000456975 SH2D1AO60880 128 aa3.3□□□□□ -1.88
CCDC88A-209ENST00000456975 IGKV3-15P01624 115 aa3.3□□□□□ -1.88
CCDC88A-209ENST00000456975 IGHV3-30P01768 117 aa3.3□□□□□ -1.88
CCDC88A-209ENST00000456975 PATE4P0C8F1 98 aa3.3□□□□□ -1.88
CCDC88A-209ENST00000456975 IGHV3-30-5P0DP03 117 aa3.3□□□□□ -1.88
CCDC88A-209ENST00000456975 EDDM3BP56851 147 aa3.3□□□□□ -1.88
CCDC88A-209ENST00000456975 KRTAP24-1Q3LI83 254 aa3.3□□□□□ -1.88
CCDC88A-209ENST00000456975 FAM167A-AS1Q96KT0 104 aa3.3□□□□□ -1.88
CCDC88A-209ENST00000456975 TTTY10Q9BZA0 68 aa3.3□□□□□ -1.88
CCDC88A-209ENST00000456975 ZNF355PQ9NSJ1 428 aa3.3□□□□□ -1.88
CCDC88A-209ENST00000456975 CUBNO60494 3623 aa3.3□□□□□ -1.88
CCDC88A-209ENST00000456975 ALPK2Q86TB3 2170 aa3.3□□□□□ -1.88
CCDC88A-209ENST00000456975 TRAV40A0A0B4J280 105 aa3.29□□□□□ -1.88
CCDC88A-209ENST00000456975 IGHV1-18A0A0C4DH31 117 aa3.29□□□□□ -1.88
CCDC88A-209ENST00000456975 RPL37AP8A6NKH3 93 aa3.29□□□□□ -1.88
CCDC88A-209ENST00000456975 CHKB-CPT1BH3BT56 60 aa3.29□□□□□ -1.88
CCDC88A-209ENST00000456975 TSPEAR-AS2P59090 65 aa3.29□□□□□ -1.88
CCDC88A-209ENST00000456975 FAM27BQ5VT28 67 aa3.29□□□□□ -1.88
CCDC88A-209ENST00000456975 C9orf47Q6ZRZ4 202 aa3.29□□□□□ -1.88
CCDC88A-209ENST00000456975 ADM2Q7Z4H4 148 aa3.29□□□□□ -1.88
CCDC88A-209ENST00000456975 SMIM29Q86T20 159 aa3.29□□□□□ -1.88
CCDC88A-209ENST00000456975 SCGB3A1Q96QR1 104 aa3.29□□□□□ -1.88
CCDC88A-209ENST00000456975 CDC42SE1Q9NRR8 79 aa3.29□□□□□ -1.88
CCDC88A-209ENST00000456975 LHFPL6Q9Y693 200 aa3.29□□□□□ -1.88
CCDC88A-209ENST00000456975 DSCAML1Q8TD84 2053 aa3.29□□□□□ -1.88
CCDC88A-209ENST00000456975 ANK3Q12955 4377 aaKnown RBP3.29□□□□□ -1.88
CCDC88A-209ENST00000456975 PMS2P5A8MQ11 134 aa3.29□□□□□ -1.88
CCDC88A-209ENST00000456975 IGLV1-51P01701 117 aa3.29□□□□□ -1.88
CCDC88A-209ENST00000456975 PRSS1P07477 247 aa3.29□□□□□ -1.88
CCDC88A-209ENST00000456975 PLNP26678 52 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 165.4 ms