RNA–Protein interactions for RNA: ENST00000354822.6

NKX2-1-201, Transcript of NK2 homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene NKX2-1, Length 2,191 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1-201ENST00000354822 PPDPFLQ8WWR9 84 aa15.73■□□□□ 0.11
NKX2-1-201ENST00000354822 SETD2Q9BYW2 2564 aaPredicted RBP15.73■□□□□ 0.11
NKX2-1-201ENST00000354822 LOC100131303A0A0U1RQF7 123 aa15.73■□□□□ 0.11
NKX2-1-201ENST00000354822 F5H768 121 aa15.72■□□□□ 0.11
NKX2-1-201ENST00000354822 COX6CP09669 75 aa15.72■□□□□ 0.11
NKX2-1-201ENST00000354822 HERV-K104P63124 156 aa15.72■□□□□ 0.11
NKX2-1-201ENST00000354822 SLC25A20O43772 301 aa15.71■□□□□ 0.11
NKX2-1-201ENST00000354822 SETXQ7Z333 2677 aaKnown RBP15.71■□□□□ 0.1
NKX2-1-201ENST00000354822 TRBV6-8A0A0A6YYG3 113 aa15.7■□□□□ 0.1
NKX2-1-201ENST00000354822 TRIAP1O43715 76 aa15.7■□□□□ 0.1
NKX2-1-201ENST00000354822 NPC2P61916 151 aa15.7■□□□□ 0.1
NKX2-1-201ENST00000354822 ICOSQ9Y6W8 199 aa15.7■□□□□ 0.1
NKX2-1-201ENST00000354822 HECTD1Q9ULT8 2610 aa15.7■□□□□ 0.1
NKX2-1-201ENST00000354822 C9JAW5 83 aa15.69■□□□□ 0.1
NKX2-1-201ENST00000354822 ZNF625Q96I27 306 aaPredicted RBP15.69■□□□□ 0.1
NKX2-1-201ENST00000354822 NOTCH3Q9UM47 2321 aa15.69■□□□□ 0.1
NKX2-1-201ENST00000354822 SMIM9A6NGZ8 99 aa15.69■□□□□ 0.1
NKX2-1-201ENST00000354822 LINC00612Q8N6U2 182 aa15.69■□□□□ 0.1
NKX2-1-201ENST00000354822 LINC00308Q8TCZ7 52 aa15.69■□□□□ 0.1
NKX2-1-201ENST00000354822 PRIMA1Q86XR5 153 aa15.68■□□□□ 0.1
NKX2-1-201ENST00000354822 LINC01600Q96MT4 127 aa15.68■□□□□ 0.1
NKX2-1-201ENST00000354822 JMJD1CQ15652 2540 aa15.67■□□□□ 0.1
NKX2-1-201ENST00000354822 CRLF1O75462 422 aa15.67■□□□□ 0.1
NKX2-1-201ENST00000354822 LINC01620Q4KN68 170 aa15.67■□□□□ 0.1
NKX2-1-201ENST00000354822 DAND5Q8N907 189 aa15.67■□□□□ 0.1
NKX2-1-201ENST00000354822 GAGE6Q13070 117 aa15.66■□□□□ 0.1
NKX2-1-201ENST00000354822 PPDPFQ9H3Y8 114 aa15.66■□□□□ 0.1
NKX2-1-201ENST00000354822 CARD19Q96LW7 228 aa15.66■□□□□ 0.1
NKX2-1-201ENST00000354822 C9orf66Q5T8R8 295 aa15.65■□□□□ 0.1
NKX2-1-201ENST00000354822 ANKRD29Q8N6D5 301 aa15.65■□□□□ 0.1
NKX2-1-201ENST00000354822 DEFB130BP0DP73 79 aa15.65■□□□□ 0.1
NKX2-1-201ENST00000354822 DEFB130AP0DP74 79 aa15.65■□□□□ 0.1
NKX2-1-201ENST00000354822 SCGB1A1P11684 91 aa15.65■□□□□ 0.1
NKX2-1-201ENST00000354822 MEIG1Q5JSS6 88 aa15.65■□□□□ 0.1
NKX2-1-201ENST00000354822 CHCHD5Q9BSY4 110 aa15.65■□□□□ 0.1
NKX2-1-201ENST00000354822 RPL13AP40429 203 aaKnown RBP15.63■□□□□ 0.09
NKX2-1-201ENST00000354822 NIPBLQ6KC79 2804 aaeCLIP15.63■□□□□ 0.09
NKX2-1-201ENST00000354822 TRBV10-2A0A0K0K1G8 114 aa15.62■□□□□ 0.09
NKX2-1-201ENST00000354822 X6R8D5 127 aa15.62■□□□□ 0.09
NKX2-1-201ENST00000354822 IGLV4-60A0A075B6I1 120 aa15.6■□□□□ 0.09
NKX2-1-201ENST00000354822 COX7B2Q8TF08 81 aa15.6■□□□□ 0.09
NKX2-1-201ENST00000354822 A0A0U1RRA0 63 aa15.59■□□□□ 0.09
NKX2-1-201ENST00000354822 PRO0255Q9UI72 69 aa15.58■□□□□ 0.08
NKX2-1-201ENST00000354822 GYPEP15421 78 aa15.58■□□□□ 0.08
NKX2-1-201ENST00000354822 OTOGQ6ZRI0 2925 aa15.57■□□□□ 0.08
NKX2-1-201ENST00000354822 IGHV3OR16-9A0A0B4J2B5 98 aa15.57■□□□□ 0.08
NKX2-1-201ENST00000354822 LYRM9A8MSI8 78 aa15.57■□□□□ 0.08
NKX2-1-201ENST00000354822 TMEM262E9PQX1 116 aa15.57■□□□□ 0.08
NKX2-1-201ENST00000354822 LST1O00453 97 aa15.57■□□□□ 0.08
NKX2-1-201ENST00000354822 C2CD3Q4AC94 2353 aa15.57■□□□□ 0.08
NKX2-1-201ENST00000354822 SOSTDC1Q6X4U4 206 aa15.56■□□□□ 0.08
NKX2-1-201ENST00000354822 CDIP1Q9H305 208 aa15.56■□□□□ 0.08
NKX2-1-201ENST00000354822 A0A087WZ39 114 aa15.55■□□□□ 0.08
NKX2-1-201ENST00000354822 IGKV3OR2-268A0A0C4DH90 116 aa15.55■□□□□ 0.08
NKX2-1-201ENST00000354822 H3BT86 120 aa15.55■□□□□ 0.08
NKX2-1-201ENST00000354822 A0A1B0GUV1 79 aa15.55■□□□□ 0.08
NKX2-1-201ENST00000354822 NOTCH2Q04721 2471 aa15.54■□□□□ 0.08
NKX2-1-201ENST00000354822 C2orf82Q6UX34 121 aa15.53■□□□□ 0.08
NKX2-1-201ENST00000354822 APOC4P55056 127 aa15.53■□□□□ 0.08
NKX2-1-201ENST00000354822 NTN5Q8WTR8 489 aaPredicted RBP15.53■□□□□ 0.08
NKX2-1-201ENST00000354822 SHISA2Q6UWI4 295 aa15.52■□□□□ 0.08
NKX2-1-201ENST00000354822 CLEC2BQ92478 149 aa15.52■□□□□ 0.08
NKX2-1-201ENST00000354822 TOMM7Q9P0U1 55 aa15.52■□□□□ 0.08
NKX2-1-201ENST00000354822 LINC00959A0A1B0GUT2 108 aa15.52■□□□□ 0.07
NKX2-1-201ENST00000354822 FAM222AQ5U5X8 452 aa15.52■□□□□ 0.07
NKX2-1-201ENST00000354822 FN1P02751 2386 aaKnown RBP15.51■□□□□ 0.07
NKX2-1-201ENST00000354822 SPATA3Q8NHX4 192 aa15.51■□□□□ 0.07
NKX2-1-201ENST00000354822 CITED1Q99966 193 aa15.51■□□□□ 0.07
NKX2-1-201ENST00000354822 COX7A2LO14548 114 aa15.49■□□□□ 0.07
NKX2-1-201ENST00000354822 PAX4O43316 350 aa15.49■□□□□ 0.07
NKX2-1-201ENST00000354822 SS18Q15532 418 aa15.49■□□□□ 0.07
NKX2-1-201ENST00000354822 TRAV13-2A0A0B4J235 113 aa15.48■□□□□ 0.07
NKX2-1-201ENST00000354822 IBA57-AS1B1ANH7 110 aa15.48■□□□□ 0.07
NKX2-1-201ENST00000354822 MIR7-3HGQ8N6C7 128 aa15.48■□□□□ 0.07
NKX2-1-201ENST00000354822 UBE2WQ96B02 151 aa15.48■□□□□ 0.07
NKX2-1-201ENST00000354822 NSD1Q96L73 2696 aaPredicted RBP15.47■□□□□ 0.07
NKX2-1-201ENST00000354822 C5orf38Q86SI9 138 aa15.47■□□□□ 0.07
NKX2-1-201ENST00000354822 DEFB135Q30KP9 77 aa15.46■□□□□ 0.07
NKX2-1-201ENST00000354822 LINC01561Q8N1V8 128 aa15.46■□□□□ 0.07
NKX2-1-201ENST00000354822 LINC00158P58513 81 aa15.45■□□□□ 0.06
NKX2-1-201ENST00000354822 TEX49A0A1B0GTD5 131 aa15.45■□□□□ 0.06
NKX2-1-201ENST00000354822 SND1-IT1Q9HBX3 110 aa15.43■□□□□ 0.06
NKX2-1-201ENST00000354822 MIFP14174 115 aa15.42■□□□□ 0.06
NKX2-1-201ENST00000354822 DAD1P61803 113 aa15.42■□□□□ 0.06
NKX2-1-201ENST00000354822 C6orf226Q5I0X4 101 aa15.42■□□□□ 0.06
NKX2-1-201ENST00000354822 IGHV4-28A0A0C4DH34 117 aa15.42■□□□□ 0.06
NKX2-1-201ENST00000354822 CRPP02741 224 aa15.42■□□□□ 0.06
NKX2-1-201ENST00000354822 XGP55808 180 aa15.42■□□□□ 0.06
NKX2-1-201ENST00000354822 HIVEP1P15822 2718 aa15.41■□□□□ 0.06
NKX2-1-201ENST00000354822 XCL1P47992 114 aa15.41■□□□□ 0.06
NKX2-1-201ENST00000354822 WFDC9Q8NEX5 89 aa15.41■□□□□ 0.06
NKX2-1-201ENST00000354822 TRACP01848 142 aa15.4■□□□□ 0.06
NKX2-1-201ENST00000354822 MT-ATP8P03928 68 aa15.4■□□□□ 0.06
NKX2-1-201ENST00000354822 RPL28P46779 137 aaKnown RBP15.4■□□□□ 0.06
NKX2-1-201ENST00000354822 TRAV26-1A0A087WT03 109 aa15.39■□□□□ 0.05
NKX2-1-201ENST00000354822 A0A096LPF7 62 aa15.39■□□□□ 0.05
NKX2-1-201ENST00000354822 Q8IZM0 81 aa15.39■□□□□ 0.05
NKX2-1-201ENST00000354822 TRAV8-4A0A0B4J246 113 aa15.39■□□□□ 0.05
NKX2-1-201ENST00000354822 DEFB121Q5J5C9 76 aa15.39■□□□□ 0.05
NKX2-1-201ENST00000354822 ATP5G1P05496 136 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms