RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 HIGD1BQ9P298 99 aa11.27□□□□□ -0.6
PDLIM1-201ENST00000329399 BIRC6Q9NR09 4857 aa11.27□□□□□ -0.61
PDLIM1-201ENST00000329399 TMEM223A0PJW6 202 aa11.26□□□□□ -0.61
PDLIM1-201ENST00000329399 ZNF22P17026 224 aaPredicted RBP11.26□□□□□ -0.61
PDLIM1-201ENST00000329399 PLEKHB2Q96CS7 222 aa11.26□□□□□ -0.61
PDLIM1-201ENST00000329399 A0A096LPF7 62 aa11.25□□□□□ -0.61
PDLIM1-201ENST00000329399 GAGE6Q13070 117 aa11.25□□□□□ -0.61
PDLIM1-201ENST00000329399 HECTD4Q9Y4D8 3996 aa11.25□□□□□ -0.61
PDLIM1-201ENST00000329399 M0R2N4 97 aa11.25□□□□□ -0.61
PDLIM1-201ENST00000329399 LEPROTO15243 131 aa11.25□□□□□ -0.61
PDLIM1-201ENST00000329399 CTAG1AP78358 180 aa11.25□□□□□ -0.61
PDLIM1-201ENST00000329399 C15orf53Q8NAA6 179 aa11.25□□□□□ -0.61
PDLIM1-201ENST00000329399 IGKV2D-26A0A0A0MRZ7 120 aa11.24□□□□□ -0.61
PDLIM1-201ENST00000329399 TRAV8-6A0A0B4J262 113 aa11.24□□□□□ -0.61
PDLIM1-201ENST00000329399 MYMXA0A1B0GTQ4 84 aa11.23□□□□□ -0.61
PDLIM1-201ENST00000329399 TMEM262E9PQX1 116 aa11.23□□□□□ -0.61
PDLIM1-201ENST00000329399 PCP2Q8IVA1 136 aa11.23□□□□□ -0.61
PDLIM1-201ENST00000329399 LINC00588Q9Y4M8 146 aa11.23□□□□□ -0.61
PDLIM1-201ENST00000329399 LINC00242Q5T6M2 205 aa11.22□□□□□ -0.61
PDLIM1-201ENST00000329399 IGHV1-58A0A0C4DH39 117 aa11.21□□□□□ -0.61
PDLIM1-201ENST00000329399 RBX1P62877 108 aa11.21□□□□□ -0.61
PDLIM1-201ENST00000329399 TAL2Q16559 108 aa11.21□□□□□ -0.61
PDLIM1-201ENST00000329399 ESRGQ1W209 222 aa11.21□□□□□ -0.61
PDLIM1-201ENST00000329399 RNASE13Q5GAN3 156 aaKnown RBP11.21□□□□□ -0.61
PDLIM1-201ENST00000329399 LYPD5Q6UWN5 251 aa11.21□□□□□ -0.61
PDLIM1-201ENST00000329399 UBE2DNLQ8IWF7 75 aa11.21□□□□□ -0.61
PDLIM1-201ENST00000329399 LINC00469Q8N7U9 141 aa11.21□□□□□ -0.61
PDLIM1-201ENST00000329399 J3QQQ9 107 aa11.2□□□□□ -0.62
PDLIM1-201ENST00000329399 LGALS3P17931 250 aaKnown RBP11.2□□□□□ -0.62
PDLIM1-201ENST00000329399 TRAV13-1A0A0B4J241 112 aa11.19□□□□□ -0.62
PDLIM1-201ENST00000329399 HSD52Q0P140 79 aa11.19□□□□□ -0.62
PDLIM1-201ENST00000329399 SS18Q15532 418 aa11.19□□□□□ -0.62
PDLIM1-201ENST00000329399 C2orf91Q6ZV80 131 aa11.19□□□□□ -0.62
PDLIM1-201ENST00000329399 PKHD1P08F94 4074 aa11.19□□□□□ -0.62
PDLIM1-201ENST00000329399 IGLV4-60A0A075B6I1 120 aa11.19□□□□□ -0.62
PDLIM1-201ENST00000329399 Q6ZR54 194 aa11.19□□□□□ -0.62
PDLIM1-201ENST00000329399 LINC01561Q8N1V8 128 aa11.19□□□□□ -0.62
PDLIM1-201ENST00000329399 PKD1P98161 4303 aa11.18□□□□□ -0.62
PDLIM1-201ENST00000329399 ZNF815PA8K554 130 aa11.18□□□□□ -0.62
PDLIM1-201ENST00000329399 IGHV3-30-3P0DP02 117 aa11.17□□□□□ -0.62
PDLIM1-201ENST00000329399 MPV17L2Q567V2 206 aa11.17□□□□□ -0.62
PDLIM1-201ENST00000329399 SNHG12Q9BXW3 62 aa11.17□□□□□ -0.62
PDLIM1-201ENST00000329399 CDKN2A-AS1Q9UH64 79 aa11.17□□□□□ -0.62
PDLIM1-201ENST00000329399 LINC00959A0A1B0GUT2 108 aa11.16□□□□□ -0.62
PDLIM1-201ENST00000329399 MAPKAPK5-AS1Q8N8E1 139 aa11.16□□□□□ -0.62
PDLIM1-201ENST00000329399 IGLV5-39A0A0G2JS06 123 aa11.15□□□□□ -0.62
PDLIM1-201ENST00000329399 RTL8CO15255 209 aa11.15□□□□□ -0.62
PDLIM1-201ENST00000329399 CCL18P55774 89 aa11.15□□□□□ -0.62
PDLIM1-201ENST00000329399 COL5A1-AS1Q5SY13 56 aa11.15□□□□□ -0.62
PDLIM1-201ENST00000329399 DNAH11Q96DT5 4516 aa11.15□□□□□ -0.62
PDLIM1-201ENST00000329399 SFTA2Q6UW10 78 aa11.14□□□□□ -0.63
PDLIM1-201ENST00000329399 SCGB1D4Q6XE38 83 aa11.14□□□□□ -0.63
PDLIM1-201ENST00000329399 COX6A2Q02221 97 aa11.13□□□□□ -0.63
PDLIM1-201ENST00000329399 KRTAP1-5Q9BYS1 174 aa11.13□□□□□ -0.63
PDLIM1-201ENST00000329399 A0A087WZ39 114 aa11.12□□□□□ -0.63
PDLIM1-201ENST00000329399 IGHV3OR16-9A0A0B4J2B5 98 aa11.12□□□□□ -0.63
PDLIM1-201ENST00000329399 ANGP03950 147 aaKnown RBP11.12□□□□□ -0.63
PDLIM1-201ENST00000329399 Q9H8V8 135 aa11.12□□□□□ -0.63
PDLIM1-201ENST00000329399 SPANXB1Q9NS25 103 aaPredicted RBP11.12□□□□□ -0.63
PDLIM1-201ENST00000329399 TRAV8-4A0A0B4J246 113 aa11.12□□□□□ -0.63
PDLIM1-201ENST00000329399 HINT1P49773 126 aaPredicted RBP11.12□□□□□ -0.63
PDLIM1-201ENST00000329399 REG3AQ06141 175 aa11.12□□□□□ -0.63
PDLIM1-201ENST00000329399 BVES-AS1Q5T3Y7 98 aa11.12□□□□□ -0.63
PDLIM1-201ENST00000329399 TTTY13Q9BZ97 58 aa11.12□□□□□ -0.63
PDLIM1-201ENST00000329399 PRR34Q9NV39 138 aa11.12□□□□□ -0.63
PDLIM1-201ENST00000329399 NBDYA0A0U1RRE5 68 aa11.11□□□□□ -0.63
PDLIM1-201ENST00000329399 A6NDN8 102 aa11.11□□□□□ -0.63
PDLIM1-201ENST00000329399 SMIM1B2RUZ4 78 aa11.11□□□□□ -0.63
PDLIM1-201ENST00000329399 SPINK8P0C7L1 97 aa11.11□□□□□ -0.63
PDLIM1-201ENST00000329399 CD164L2Q6UWJ8 174 aa11.11□□□□□ -0.63
PDLIM1-201ENST00000329399 Q6ZVH6 145 aa11.11□□□□□ -0.63
PDLIM1-201ENST00000329399 LINC00269Q8N2A0 174 aa11.11□□□□□ -0.63
PDLIM1-201ENST00000329399 TM2D2Q9BX73 214 aa11.11□□□□□ -0.63
PDLIM1-201ENST00000329399 TSPEAR-AS2P59090 65 aa11.1□□□□□ -0.63
PDLIM1-201ENST00000329399 HERV-K104P63124 156 aa11.1□□□□□ -0.63
PDLIM1-201ENST00000329399 ORAOV1Q8WV07 137 aa11.1□□□□□ -0.63
PDLIM1-201ENST00000329399 NDUFA12Q9UI09 145 aa11.1□□□□□ -0.63
PDLIM1-201ENST00000329399 TRAV8-3A0A0A6YYJ7 113 aa11.09□□□□□ -0.63
PDLIM1-201ENST00000329399 TMEM238C9JI98 176 aa11.09□□□□□ -0.63
PDLIM1-201ENST00000329399 EREGO14944 169 aa11.09□□□□□ -0.63
PDLIM1-201ENST00000329399 NDUFA1O15239 70 aa11.09□□□□□ -0.63
PDLIM1-201ENST00000329399 TIMM17BO60830 172 aa11.09□□□□□ -0.63
PDLIM1-201ENST00000329399 LINC01556Q5JQF7 62 aa11.09□□□□□ -0.63
PDLIM1-201ENST00000329399 HIST1H4GQ99525 98 aa11.09□□□□□ -0.63
PDLIM1-201ENST00000329399 UPK3BQ9BT76 320 aa11.09□□□□□ -0.63
PDLIM1-201ENST00000329399 BATFQ16520 125 aa11.08□□□□□ -0.64
PDLIM1-201ENST00000329399 TP73-AS1Q9UF72 201 aa11.08□□□□□ -0.64
PDLIM1-201ENST00000329399 IGHV3-64A0A075B6Q5 118 aa11.07□□□□□ -0.64
PDLIM1-201ENST00000329399 IGKV3OR2-268A0A0C4DH90 116 aa11.07□□□□□ -0.64
PDLIM1-201ENST00000329399 TMEM238LA0A1B0GVL6 79 aa11.07□□□□□ -0.64
PDLIM1-201ENST00000329399 A6NJY4 79 aa11.07□□□□□ -0.64
PDLIM1-201ENST00000329399 K7EP13 123 aa11.07□□□□□ -0.64
PDLIM1-201ENST00000329399 CIRBPQ14011 172 aaKnown RBP11.07□□□□□ -0.64
PDLIM1-201ENST00000329399 MIAQ16674 131 aa11.07□□□□□ -0.64
PDLIM1-201ENST00000329399 CEND1Q8N111 149 aa11.07□□□□□ -0.64
PDLIM1-201ENST00000329399 CRPP02741 224 aa11.06□□□□□ -0.64
PDLIM1-201ENST00000329399 GCSHP23434 173 aa11.06□□□□□ -0.64
PDLIM1-201ENST00000329399 SRSF9Q13242 221 aaKnown RBP eCLIP11.06□□□□□ -0.64
PDLIM1-201ENST00000329399 COPS9Q8WXC6 57 aa11.06□□□□□ -0.64
PDLIM1-201ENST00000329399 A0A0J9YXY3 114 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 102.4 ms