RNA–Protein interactions for RNA: ENST00000590574.5

SMARCA4-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMARCA4, Length 5,282 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-215ENST00000590574 DPH3Q96FX2 82 aa12.51□□□□□ -0.41
SMARCA4-215ENST00000590574 ZNF580Q9UK33 172 aa12.51□□□□□ -0.41
SMARCA4-215ENST00000590574 LRRC75A-AS1Q8N1F1 130 aa12.51□□□□□ -0.41
SMARCA4-215ENST00000590574 WNK1Q9H4A3 2382 aa12.51□□□□□ -0.41
SMARCA4-215ENST00000590574 UBE2D3P61077 147 aa12.51□□□□□ -0.41
SMARCA4-215ENST00000590574 UBE2D2P62837 147 aa12.51□□□□□ -0.41
SMARCA4-215ENST00000590574 DSCR8Q96T75 97 aa12.51□□□□□ -0.41
SMARCA4-215ENST00000590574 J3QKU1 62 aa12.5□□□□□ -0.41
SMARCA4-215ENST00000590574 TIMM17BO60830 172 aa12.5□□□□□ -0.41
SMARCA4-215ENST00000590574 KIF25-AS1Q9Y6Z4 181 aa12.5□□□□□ -0.41
SMARCA4-215ENST00000590574 COL27A1Q8IZC6 1860 aaPredicted RBP12.5□□□□□ -0.41
SMARCA4-215ENST00000590574 POM121L12Q8N7R1 296 aa12.5□□□□□ -0.41
SMARCA4-215ENST00000590574 WFDC11Q8NEX6 87 aa12.49□□□□□ -0.41
SMARCA4-215ENST00000590574 PRUNE2Q8WUY3 3088 aa12.49□□□□□ -0.41
SMARCA4-215ENST00000590574 NCR3O14931 201 aa12.49□□□□□ -0.41
SMARCA4-215ENST00000590574 C9orf66Q5T8R8 295 aa12.48□□□□□ -0.41
SMARCA4-215ENST00000590574 ATP5G1P05496 136 aa12.48□□□□□ -0.41
SMARCA4-215ENST00000590574 TRACP01848 142 aa12.48□□□□□ -0.41
SMARCA4-215ENST00000590574 ANKRD11Q6UB99 2663 aaPredicted RBP12.48□□□□□ -0.41
SMARCA4-215ENST00000590574 DEFB135Q30KP9 77 aa12.47□□□□□ -0.41
SMARCA4-215ENST00000590574 C3orf56Q8N813 242 aa12.47□□□□□ -0.41
SMARCA4-215ENST00000590574 C14orf132Q9NPU4 83 aa12.47□□□□□ -0.41
SMARCA4-215ENST00000590574 CHCHD7Q9BUK0 85 aa12.47□□□□□ -0.41
SMARCA4-215ENST00000590574 LST1O00453 97 aa12.46□□□□□ -0.41
SMARCA4-215ENST00000590574 H7C423 109 aa12.46□□□□□ -0.42
SMARCA4-215ENST00000590574 MRPL23Q16540 153 aaKnown RBP12.46□□□□□ -0.42
SMARCA4-215ENST00000590574 FAM19A4Q96LR4 140 aa12.46□□□□□ -0.42
SMARCA4-215ENST00000590574 PRO0255Q9UI72 69 aa12.46□□□□□ -0.42
SMARCA4-215ENST00000590574 TMEM126AQ9H061 195 aa12.45□□□□□ -0.42
SMARCA4-215ENST00000590574 LOC100131303A0A0U1RQF7 123 aa12.45□□□□□ -0.42
SMARCA4-215ENST00000590574 LINC00643Q86TS7 51 aa12.45□□□□□ -0.42
SMARCA4-215ENST00000590574 WFDC10AQ9H1F0 79 aa12.45□□□□□ -0.42
SMARCA4-215ENST00000590574 LINC00315P59091 139 aa12.44□□□□□ -0.42
SMARCA4-215ENST00000590574 SMIM20Q8N5G0 67 aa12.44□□□□□ -0.42
SMARCA4-215ENST00000590574 TRBV6-8A0A0A6YYG3 113 aa12.44□□□□□ -0.42
SMARCA4-215ENST00000590574 TRBV6-4A0A1B0GX49 114 aa12.44□□□□□ -0.42
SMARCA4-215ENST00000590574 NDUFA7O95182 113 aa12.44□□□□□ -0.42
SMARCA4-215ENST00000590574 ADAMTSL4-AS1Q5T5F5 129 aa12.44□□□□□ -0.42
SMARCA4-215ENST00000590574 NKAPP1Q8N9T2 125 aa12.44□□□□□ -0.42
SMARCA4-215ENST00000590574 AMELXQ99217 191 aa12.44□□□□□ -0.42
SMARCA4-215ENST00000590574 SPART-AS1P0CW21 52 aa12.43□□□□□ -0.42
SMARCA4-215ENST00000590574 Q6ZSN1 163 aa12.43□□□□□ -0.42
SMARCA4-215ENST00000590574 SZT2Q5T011 3432 aa12.43□□□□□ -0.42
SMARCA4-215ENST00000590574 NAV2Q8IVL1 2488 aa12.42□□□□□ -0.42
SMARCA4-215ENST00000590574 PTPN13Q12923 2485 aa12.42□□□□□ -0.42
SMARCA4-215ENST00000590574 A0A1B0GX51 115 aa12.42□□□□□ -0.42
SMARCA4-215ENST00000590574 CXCL5P42830 114 aa12.42□□□□□ -0.42
SMARCA4-215ENST00000590574 XIRP2A4UGR9 3374 aa12.42□□□□□ -0.42
SMARCA4-215ENST00000590574 LINC00242Q5T6M2 205 aa12.41□□□□□ -0.42
SMARCA4-215ENST00000590574 LINC00269Q8N2A0 174 aa12.41□□□□□ -0.42
SMARCA4-215ENST00000590574 ATOX1O00244 68 aa12.41□□□□□ -0.42
SMARCA4-215ENST00000590574 COX6A2Q02221 97 aa12.41□□□□□ -0.42
SMARCA4-215ENST00000590574 ODF3L2Q3SX64 289 aa12.4□□□□□ -0.42
SMARCA4-215ENST00000590574 IBA57-AS1B1ANH7 110 aa12.4□□□□□ -0.42
SMARCA4-215ENST00000590574 SPAG11BQ08648 103 aa12.4□□□□□ -0.42
SMARCA4-215ENST00000590574 CDC42SE2Q9NRR3 84 aa12.39□□□□□ -0.43
SMARCA4-215ENST00000590574 SLPIP03973 132 aa12.39□□□□□ -0.43
SMARCA4-215ENST00000590574 JMJD7-PLA2G4BH0Y9G9 81 aa12.39□□□□□ -0.43
SMARCA4-215ENST00000590574 HIVEP3Q5T1R4 2406 aa12.39□□□□□ -0.43
SMARCA4-215ENST00000590574 CAMK2N2Q96S95 79 aa12.39□□□□□ -0.43
SMARCA4-215ENST00000590574 C2CD3Q4AC94 2353 aa12.39□□□□□ -0.43
SMARCA4-215ENST00000590574 KLK12Q9UKR0 248 aa12.39□□□□□ -0.43
SMARCA4-215ENST00000590574 FAM222AQ5U5X8 452 aa12.38□□□□□ -0.43
SMARCA4-215ENST00000590574 RBMY1FQ15415 496 aaKnown RBP12.38□□□□□ -0.43
SMARCA4-215ENST00000590574 IGKV2D-24A0A075B6R9 120 aa12.38□□□□□ -0.43
SMARCA4-215ENST00000590574 DEFB121Q5J5C9 76 aa12.38□□□□□ -0.43
SMARCA4-215ENST00000590574 TRIOO75962 3097 aa12.38□□□□□ -0.43
SMARCA4-215ENST00000590574 LINC00694P0DN24 101 aa12.38□□□□□ -0.43
SMARCA4-215ENST00000590574 ZNF843Q8N446 348 aa12.37□□□□□ -0.43
SMARCA4-215ENST00000590574 AGRNO00468 2067 aa12.37□□□□□ -0.43
SMARCA4-215ENST00000590574 KRTAP10-9P60411 292 aa12.37□□□□□ -0.43
SMARCA4-215ENST00000590574 TMEM256-PLSCR3K7ERE1 68 aa12.36□□□□□ -0.43
SMARCA4-215ENST00000590574 SMIM1B2RUZ4 78 aa12.36□□□□□ -0.43
SMARCA4-215ENST00000590574 REG3AQ06141 175 aa12.36□□□□□ -0.43
SMARCA4-215ENST00000590574 LINC01006Q8NI28 216 aa12.36□□□□□ -0.43
SMARCA4-215ENST00000590574 CHCHD10Q8WYQ3 142 aaPredicted RBP12.36□□□□□ -0.43
SMARCA4-215ENST00000590574 KLK9Q2XQG4 91 aa12.35□□□□□ -0.43
SMARCA4-215ENST00000590574 SDIM1Q6ZPB5 146 aa12.35□□□□□ -0.43
SMARCA4-215ENST00000590574 C1orf158Q8N1D5 194 aa12.34□□□□□ -0.43
SMARCA4-215ENST00000590574 F8WEM9 126 aa12.34□□□□□ -0.43
SMARCA4-215ENST00000590574 C1orf43Q9BWL3 253 aa12.33□□□□□ -0.44
SMARCA4-215ENST00000590574 DEFB105AQ8NG35 78 aa12.33□□□□□ -0.44
SMARCA4-215ENST00000590574 SMCPP49901 116 aaPredicted RBP12.32□□□□□ -0.44
SMARCA4-215ENST00000590574 PRO0461Q9UI25 63 aa12.32□□□□□ -0.44
SMARCA4-215ENST00000590574 LINC00482Q8N8I6 264 aa12.32□□□□□ -0.44
SMARCA4-215ENST00000590574 SMIM11BQ8TCY0 68 aa12.32□□□□□ -0.44
SMARCA4-215ENST00000590574 BBC3Q96PG8 261 aaPredicted RBP12.32□□□□□ -0.44
SMARCA4-215ENST00000590574 BEAN1Q3B7T3 259 aa12.32□□□□□ -0.44
SMARCA4-215ENST00000590574 UBE2DNLQ8IWF7 75 aa12.32□□□□□ -0.44
SMARCA4-215ENST00000590574 RBM3P98179 157 aaKnown RBP12.32□□□□□ -0.44
SMARCA4-215ENST00000590574 CFAP54Q96N23 3096 aa12.32□□□□□ -0.44
SMARCA4-215ENST00000590574 VCANP13611 3396 aa12.32□□□□□ -0.44
SMARCA4-215ENST00000590574 LINC00959A0A1B0GUT2 108 aa12.31□□□□□ -0.44
SMARCA4-215ENST00000590574 PSCAO43653 123 aa12.31□□□□□ -0.44
SMARCA4-215ENST00000590574 CDIP1Q9H305 208 aa12.31□□□□□ -0.44
SMARCA4-215ENST00000590574 SMIM9A6NGZ8 99 aa12.31□□□□□ -0.44
SMARCA4-215ENST00000590574 RPL18AQ02543 176 aaKnown RBP12.31□□□□□ -0.44
SMARCA4-215ENST00000590574 CCDC179H3BU77 68 aa12.31□□□□□ -0.44
SMARCA4-215ENST00000590574 LYRM9A8MSI8 78 aa12.3□□□□□ -0.44
SMARCA4-215ENST00000590574 CITED1Q99966 193 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms