RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 LINC00694P0DN24 101 aa5.35□□□□□ -1.55
VPS39-204ENST00000561818 CIRBPQ14011 172 aaKnown RBP5.35□□□□□ -1.55
VPS39-204ENST00000561818 FHL2Q14192 279 aa5.35□□□□□ -1.55
VPS39-204ENST00000561818 MRPL23Q16540 153 aaKnown RBP5.35□□□□□ -1.55
VPS39-204ENST00000561818 LINC01561Q8N1V8 128 aa5.35□□□□□ -1.55
VPS39-204ENST00000561818 ATP6V0E2Q8NHE4 81 aa5.35□□□□□ -1.55
VPS39-204ENST00000561818 TM2D2Q9BX73 214 aa5.35□□□□□ -1.55
VPS39-204ENST00000561818 PPDPFQ9H3Y8 114 aa5.35□□□□□ -1.55
VPS39-204ENST00000561818 TP73-AS1Q9UF72 201 aa5.35□□□□□ -1.55
VPS39-204ENST00000561818 IGHV1-58A0A0C4DH39 117 aa5.34□□□□□ -1.55
VPS39-204ENST00000561818 TMEM223A0PJW6 202 aa5.34□□□□□ -1.55
VPS39-204ENST00000561818 GAGE12JA6NER3 117 aa5.34□□□□□ -1.55
VPS39-204ENST00000561818 J3QQQ9 107 aa5.34□□□□□ -1.55
VPS39-204ENST00000561818 EREGO14944 169 aa5.34□□□□□ -1.55
VPS39-204ENST00000561818 PAX4O43316 350 aa5.34□□□□□ -1.55
VPS39-204ENST00000561818 TIMM17BO60830 172 aa5.34□□□□□ -1.55
VPS39-204ENST00000561818 HINT1P49773 126 aaPredicted RBP5.34□□□□□ -1.55
VPS39-204ENST00000561818 PTTG1IPP53801 180 aa5.34□□□□□ -1.55
VPS39-204ENST00000561818 HERV-K104P63124 156 aa5.34□□□□□ -1.55
VPS39-204ENST00000561818 GAGE4Q13068 117 aa5.34□□□□□ -1.55
VPS39-204ENST00000561818 GAGE5Q13069 117 aa5.34□□□□□ -1.55
VPS39-204ENST00000561818 DEFB135Q30KP9 77 aa5.34□□□□□ -1.55
VPS39-204ENST00000561818 GAGE13Q4V321 117 aa5.34□□□□□ -1.55
VPS39-204ENST00000561818 MPV17L2Q567V2 206 aa5.34□□□□□ -1.55
VPS39-204ENST00000561818 FAM222AQ5U5X8 452 aa5.34□□□□□ -1.55
VPS39-204ENST00000561818 C2orf91Q6ZV80 131 aa5.34□□□□□ -1.55
VPS39-204ENST00000561818 HIST1H4GQ99525 98 aa5.34□□□□□ -1.55
VPS39-204ENST00000561818 TEP1Q99973 2627 aaKnown RBP5.33□□□□□ -1.56
VPS39-204ENST00000561818 IGHV4-28A0A0C4DH34 117 aa5.33□□□□□ -1.56
VPS39-204ENST00000561818 A0A0J9YXY3 114 aa5.33□□□□□ -1.56
VPS39-204ENST00000561818 DEFB130BP0DP73 79 aa5.33□□□□□ -1.56
VPS39-204ENST00000561818 DEFB130AP0DP74 79 aa5.33□□□□□ -1.56
VPS39-204ENST00000561818 ZNF22P17026 224 aaPredicted RBP5.33□□□□□ -1.56
VPS39-204ENST00000561818 UBE2D1P51668 147 aa5.33□□□□□ -1.56
VPS39-204ENST00000561818 RPL24P83731 157 aaKnown RBP5.33□□□□□ -1.56
VPS39-204ENST00000561818 Q6ZSN1 163 aa5.33□□□□□ -1.56
VPS39-204ENST00000561818 GTF2H5Q6ZYL4 71 aa5.33□□□□□ -1.56
VPS39-204ENST00000561818 SBSPONQ8IVN8 264 aa5.33□□□□□ -1.56
VPS39-204ENST00000561818 CEND1Q8N111 149 aa5.33□□□□□ -1.56
VPS39-204ENST00000561818 Q8NAQ8 132 aa5.33□□□□□ -1.56
VPS39-204ENST00000561818 COX11Q9Y6N1 276 aa5.33□□□□□ -1.56
VPS39-204ENST00000561818 ICOSQ9Y6W8 199 aa5.33□□□□□ -1.56
VPS39-204ENST00000561818 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.32□□□□□ -1.56
VPS39-204ENST00000561818 SMIM13P0DJ93 91 aa5.32□□□□□ -1.56
VPS39-204ENST00000561818 IFITM1P13164 125 aa5.32□□□□□ -1.56
VPS39-204ENST00000561818 EMP1P54849 157 aa5.32□□□□□ -1.56
VPS39-204ENST00000561818 SRSF9Q13242 221 aaKnown RBP eCLIP5.32□□□□□ -1.56
VPS39-204ENST00000561818 OXLD1Q5BKU9 147 aa5.32□□□□□ -1.56
VPS39-204ENST00000561818 HIST2H2BDQ6DRA6 164 aa5.32□□□□□ -1.56
VPS39-204ENST00000561818 PCP2Q8IVA1 136 aa5.32□□□□□ -1.56
VPS39-204ENST00000561818 PHLDA1Q8WV24 401 aaPredicted RBP5.32□□□□□ -1.56
VPS39-204ENST00000561818 CHCHD5Q9BSY4 110 aa5.32□□□□□ -1.56
VPS39-204ENST00000561818 CDC42SE2Q9NRR3 84 aa5.32□□□□□ -1.56
VPS39-204ENST00000561818 ATRQ13535 2644 aa5.32□□□□□ -1.56
VPS39-204ENST00000561818 JMJD1CQ15652 2540 aa5.32□□□□□ -1.56
VPS39-204ENST00000561818 NACAE9PAV3 2078 aa5.32□□□□□ -1.56
VPS39-204ENST00000561818 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.31□□□□□ -1.56
VPS39-204ENST00000561818 IGKV2D-26A0A0A0MRZ7 120 aa5.31□□□□□ -1.56
VPS39-204ENST00000561818 IGKV2-29A2NJV5 120 aaPredicted RBP5.31□□□□□ -1.56
VPS39-204ENST00000561818 GYPEP15421 78 aa5.31□□□□□ -1.56
VPS39-204ENST00000561818 ZFAND6Q6FIF0 208 aa5.31□□□□□ -1.56
VPS39-204ENST00000561818 Q6ZUT4 128 aa5.31□□□□□ -1.56
VPS39-204ENST00000561818 MUC7Q8TAX7 377 aa5.31□□□□□ -1.56
VPS39-204ENST00000561818 VSIG2Q96IQ7 327 aa5.31□□□□□ -1.56
VPS39-204ENST00000561818 SPATA25Q9BR10 227 aa5.31□□□□□ -1.56
VPS39-204ENST00000561818 IGHV3-38A0A0C4DH36 116 aa5.3□□□□□ -1.56
VPS39-204ENST00000561818 A0A0J9YXV3 536 aa5.3□□□□□ -1.56
VPS39-204ENST00000561818 IGHV3-30-3P0DP02 117 aa5.3□□□□□ -1.56
VPS39-204ENST00000561818 SS18Q15532 418 aa5.3□□□□□ -1.56
VPS39-204ENST00000561818 LELP1Q5T871 98 aa5.3□□□□□ -1.56
VPS39-204ENST00000561818 IGLV5-39A0A0G2JS06 123 aa5.29□□□□□ -1.56
VPS39-204ENST00000561818 A0A1B0GV90 55 aa5.29□□□□□ -1.56
VPS39-204ENST00000561818 A0A1B0GWB2 263 aa5.29□□□□□ -1.56
VPS39-204ENST00000561818 C9orf118A6NHY6 69 aa5.29□□□□□ -1.56
VPS39-204ENST00000561818 NDUFA1O15239 70 aa5.29□□□□□ -1.56
VPS39-204ENST00000561818 PRM2P04554 102 aa5.29□□□□□ -1.56
VPS39-204ENST00000561818 FABP2P12104 132 aa5.29□□□□□ -1.56
VPS39-204ENST00000561818 CXCL5P42830 114 aa5.29□□□□□ -1.56
VPS39-204ENST00000561818 SAMD5Q5TGI4 173 aa5.29□□□□□ -1.56
VPS39-204ENST00000561818 SPANXDQ9BXN6 97 aa5.29□□□□□ -1.56
VPS39-204ENST00000561818 SPANXCQ9NY87 97 aa5.29□□□□□ -1.56
VPS39-204ENST00000561818 NDUFA12Q9UI09 145 aa5.29□□□□□ -1.56
VPS39-204ENST00000561818 NOTCH3Q9UM47 2321 aa5.29□□□□□ -1.56
VPS39-204ENST00000561818 A0A0J9YY99 117 aa5.28□□□□□ -1.56
VPS39-204ENST00000561818 F5H768 121 aa5.28□□□□□ -1.56
VPS39-204ENST00000561818 VAMP3Q15836 100 aa5.28□□□□□ -1.56
VPS39-204ENST00000561818 LINC00242Q5T6M2 205 aa5.28□□□□□ -1.56
VPS39-204ENST00000561818 NTM-AS1Q6ZSK4 140 aa5.28□□□□□ -1.56
VPS39-204ENST00000561818 C15orf53Q8NAA6 179 aa5.28□□□□□ -1.56
VPS39-204ENST00000561818 BAHCC1Q9P281 2608 aa5.28□□□□□ -1.56
VPS39-204ENST00000561818 A0A0B4J2C4 111 aa5.27□□□□□ -1.57
VPS39-204ENST00000561818 K7EP13 123 aa5.27□□□□□ -1.57
VPS39-204ENST00000561818 APOMO95445 188 aa5.27□□□□□ -1.57
VPS39-204ENST00000561818 UBE2V1Q13404 147 aa5.27□□□□□ -1.57
VPS39-204ENST00000561818 KPRPQ5T749 579 aaPredicted RBP5.27□□□□□ -1.57
VPS39-204ENST00000561818 TRBV20-1A0A075B6N2 111 aa5.26□□□□□ -1.57
VPS39-204ENST00000561818 A0A087WZ39 114 aa5.26□□□□□ -1.57
VPS39-204ENST00000561818 TRAV13-1A0A0B4J241 112 aa5.26□□□□□ -1.57
VPS39-204ENST00000561818 TRAV8-4A0A0B4J246 113 aa5.26□□□□□ -1.57
VPS39-204ENST00000561818 TMEM262E9PQX1 116 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms