RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 TIAM2Q8IVF5 1701 aa1.97□□□□□ -2.09
LINC00643-204ENST00000555934 COL4A1P02462 1669 aa1.97□□□□□ -2.09
LINC00643-204ENST00000555934 ZNF142P52746 1687 aaPredicted RBP1.97□□□□□ -2.09
LINC00643-204ENST00000555934 KIF1AQ12756 1690 aa1.97□□□□□ -2.09
LINC00643-204ENST00000555934 TRBV7-1A0A0A6YYK4 115 aa1.97□□□□□ -2.09
LINC00643-204ENST00000555934 TMEM30CPA0ZSE6 113 aa1.97□□□□□ -2.09
LINC00643-204ENST00000555934 WFDC2Q14508 124 aa1.97□□□□□ -2.09
LINC00643-204ENST00000555934 NMSQ5H8A3 153 aa1.97□□□□□ -2.09
LINC00643-204ENST00000555934 CYSTM1Q9H1C7 97 aa1.97□□□□□ -2.09
LINC00643-204ENST00000555934 C22orf24Q9Y442 160 aa1.97□□□□□ -2.09
LINC00643-204ENST00000555934 LAMB4A4D0S4 1761 aa1.97□□□□□ -2.09
LINC00643-204ENST00000555934 CUL9Q8IWT3 2517 aa1.96□□□□□ -2.09
LINC00643-204ENST00000555934 LRP6O75581 1613 aa1.96□□□□□ -2.1
LINC00643-204ENST00000555934 LTN1O94822 1766 aa1.96□□□□□ -2.1
LINC00643-204ENST00000555934 SIX6O95475 246 aa1.96□□□□□ -2.1
LINC00643-204ENST00000555934 PDE6HQ13956 83 aa1.96□□□□□ -2.1
LINC00643-204ENST00000555934 LYPD5Q6UWN5 251 aa1.96□□□□□ -2.1
LINC00643-204ENST00000555934 CYP2G1PQ6ZSU1 146 aa1.96□□□□□ -2.1
LINC00643-204ENST00000555934 MANBALQ9NQG1 85 aa1.96□□□□□ -2.1
LINC00643-204ENST00000555934 PKD1L3Q7Z443 1732 aa1.96□□□□□ -2.1
LINC00643-204ENST00000555934 RREB1Q92766 1687 aa1.96□□□□□ -2.1
LINC00643-204ENST00000555934 SNRNP200O75643 2136 aaKnown RBP1.96□□□□□ -2.1
LINC00643-204ENST00000555934 PTPRDP23468 1912 aa1.95□□□□□ -2.1
LINC00643-204ENST00000555934 TJP1Q07157 1748 aa1.95□□□□□ -2.1
LINC00643-204ENST00000555934 TRAV12-3A0A0B4J271 114 aa1.95□□□□□ -2.1
LINC00643-204ENST00000555934 A0A0D9SFI3 127 aa1.95□□□□□ -2.1
LINC00643-204ENST00000555934 KANTRA0A1W2PQU2 76 aa1.95□□□□□ -2.1
LINC00643-204ENST00000555934 IGHV3-33P01772 117 aa1.95□□□□□ -2.1
LINC00643-204ENST00000555934 HMGN3Q15651 99 aa1.95□□□□□ -2.1
LINC00643-204ENST00000555934 C1orf137Q5JT78 98 aa1.95□□□□□ -2.1
LINC00643-204ENST00000555934 CSAG1Q6PB30 78 aa1.95□□□□□ -2.1
LINC00643-204ENST00000555934 NDUFA11Q86Y39 141 aa1.95□□□□□ -2.1
LINC00643-204ENST00000555934 IFI27L1Q96BM0 104 aa1.95□□□□□ -2.1
LINC00643-204ENST00000555934 PATJQ8NI35 1801 aa1.95□□□□□ -2.1
LINC00643-204ENST00000555934 LAMB2P55268 1798 aa1.95□□□□□ -2.1
LINC00643-204ENST00000555934 PAPPAQ13219 1627 aa1.95□□□□□ -2.1
LINC00643-204ENST00000555934 CICQ96RK0 1608 aaPredicted RBP1.95□□□□□ -2.1
LINC00643-204ENST00000555934 TANC1Q9C0D5 1861 aa1.94□□□□□ -2.1
LINC00643-204ENST00000555934 NWD2Q9ULI1 1742 aa1.94□□□□□ -2.1
LINC00643-204ENST00000555934 PCDH15Q96QU1 1955 aa1.94□□□□□ -2.1
LINC00643-204ENST00000555934 LAMA4Q16363 1823 aa1.94□□□□□ -2.1
LINC00643-204ENST00000555934 C5P01031 1676 aa1.94□□□□□ -2.1
LINC00643-204ENST00000555934 ALS2Q96Q42 1657 aa1.94□□□□□ -2.1
LINC00643-204ENST00000555934 A0A0G2JND7 137 aa1.94□□□□□ -2.1
LINC00643-204ENST00000555934 TRBV10-1A0A0K0K1A3 114 aa1.94□□□□□ -2.1
LINC00643-204ENST00000555934 H3BUT2 72 aa1.94□□□□□ -2.1
LINC00643-204ENST00000555934 H7BZZ5 65 aa1.94□□□□□ -2.1
LINC00643-204ENST00000555934 CNBPP62633 177 aaKnown RBP1.94□□□□□ -2.1
LINC00643-204ENST00000555934 ELOBQ15370 118 aa1.94□□□□□ -2.1
LINC00643-204ENST00000555934 SPATA45Q537H7 98 aa1.94□□□□□ -2.1
LINC00643-204ENST00000555934 HEPN1Q6WQI6 88 aa1.94□□□□□ -2.1
LINC00643-204ENST00000555934 FAM167A-AS1Q96KT0 104 aa1.94□□□□□ -2.1
LINC00643-204ENST00000555934 HIGD1BQ9P298 99 aa1.94□□□□□ -2.1
LINC00643-204ENST00000555934 SCN11AQ9UI33 1791 aa1.94□□□□□ -2.1
LINC00643-204ENST00000555934 C4AP0C0L4 1744 aa1.94□□□□□ -2.1
LINC00643-204ENST00000555934 C4BP0C0L5 1744 aa1.94□□□□□ -2.1
LINC00643-204ENST00000555934 NUP188Q5SRE5 1749 aa1.94□□□□□ -2.1
LINC00643-204ENST00000555934 MYH4Q9Y623 1939 aa1.93□□□□□ -2.1
LINC00643-204ENST00000555934 ARFGEF2Q9Y6D5 1785 aa1.93□□□□□ -2.1
LINC00643-204ENST00000555934 TRBV7-3A0A075B6L6 115 aa1.93□□□□□ -2.1
LINC00643-204ENST00000555934 TRAV23DV6A0A075B6W5 121 aa1.93□□□□□ -2.1
LINC00643-204ENST00000555934 TEX49A0A1B0GTD5 131 aa1.93□□□□□ -2.1
LINC00643-204ENST00000555934 IGKV2-29A2NJV5 120 aaPredicted RBP1.93□□□□□ -2.1
LINC00643-204ENST00000555934 UBE2D3P61077 147 aa1.93□□□□□ -2.1
LINC00643-204ENST00000555934 SNRPFP62306 86 aaKnown RBP1.93□□□□□ -2.1
LINC00643-204ENST00000555934 UBE2D2P62837 147 aa1.93□□□□□ -2.1
LINC00643-204ENST00000555934 PMCHL1Q16048 86 aa1.93□□□□□ -2.1
LINC00643-204ENST00000555934 C10orf128Q5T292 105 aa1.93□□□□□ -2.1
LINC00643-204ENST00000555934 ZNF818PQ6ZRF7 136 aa1.93□□□□□ -2.1
LINC00643-204ENST00000555934 C18orf32Q8TCD1 76 aa1.93□□□□□ -2.1
LINC00643-204ENST00000555934 C4orf3Q8WVX3 66 aa1.93□□□□□ -2.1
LINC00643-204ENST00000555934 ODF3Q96PU9 254 aa1.93□□□□□ -2.1
LINC00643-204ENST00000555934 PRO1854Q9UHT4 67 aa1.93□□□□□ -2.1
LINC00643-204ENST00000555934 MED13Q9UHV7 2174 aa1.93□□□□□ -2.1
LINC00643-204ENST00000555934 DUOX1Q9NRD9 1551 aa1.93□□□□□ -2.1
LINC00643-204ENST00000555934 PLCH1Q4KWH8 1693 aa1.93□□□□□ -2.1
LINC00643-204ENST00000555934 KCPQ6ZWJ8 1503 aa1.92□□□□□ -2.1
LINC00643-204ENST00000555934 TRAV22A0A0B4J277 110 aa1.92□□□□□ -2.1
LINC00643-204ENST00000555934 BCE1O60756 84 aa1.92□□□□□ -2.1
LINC00643-204ENST00000555934 UBE2D1P51668 147 aa1.92□□□□□ -2.1
LINC00643-204ENST00000555934 SMIM11AP58511 58 aa1.92□□□□□ -2.1
LINC00643-204ENST00000555934 Q6ZSA8 131 aa1.92□□□□□ -2.1
LINC00643-204ENST00000555934 VMO1Q7Z5L0 202 aa1.92□□□□□ -2.1
LINC00643-204ENST00000555934 Q8N6K4 173 aa1.92□□□□□ -2.1
LINC00643-204ENST00000555934 DMAC1Q96GE9 116 aa1.92□□□□□ -2.1
LINC00643-204ENST00000555934 LINC01600Q96MT4 127 aa1.92□□□□□ -2.1
LINC00643-204ENST00000555934 MRPL36Q9P0J6 103 aaKnown RBP1.92□□□□□ -2.1
LINC00643-204ENST00000555934 ORMDL1Q9P0S3 153 aa1.92□□□□□ -2.1
LINC00643-204ENST00000555934 DIDO1Q9BTC0 2240 aaKnown RBP1.92□□□□□ -2.1
LINC00643-204ENST00000555934 DOCK2Q92608 1830 aa1.91□□□□□ -2.1
LINC00643-204ENST00000555934 FREM3P0C091 2139 aa1.91□□□□□ -2.1
LINC00643-204ENST00000555934 SDK1Q7Z5N4 2213 aa1.91□□□□□ -2.1
LINC00643-204ENST00000555934 CASP8AP2Q9UKL3 1982 aa1.91□□□□□ -2.1
LINC00643-204ENST00000555934 TNRC6CQ9HCJ0 1690 aaKnown RBP1.91□□□□□ -2.1
LINC00643-204ENST00000555934 NUPR2A6NF83 97 aa1.91□□□□□ -2.1
LINC00643-204ENST00000555934 F2Z2F3 143 aa1.91□□□□□ -2.1
LINC00643-204ENST00000555934 EFNA4P52798 201 aa1.91□□□□□ -2.1
LINC00643-204ENST00000555934 EDDM3BP56851 147 aa1.91□□□□□ -2.1
LINC00643-204ENST00000555934 KLKP1Q107X0 134 aa1.91□□□□□ -2.1
LINC00643-204ENST00000555934 Q5VV11 94 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms