RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 AEBP2Q6ZN18 517 aaPredicted RBP28.34■■■□□ 2.13
LINC00643-204ENST00000555934 CHIC1Q5VXU3 224 aa26.88■■□□□ 1.89
LINC00643-204ENST00000555934 SENP3Q9H4L4 574 aaPredicted RBP24.17■■□□□ 1.46
LINC00643-204ENST00000555934 PHF23Q9BUL5 403 aaPredicted RBP23.83■■□□□ 1.41
LINC00643-204ENST00000555934 FOXD1Q16676 465 aa22.57■■□□□ 1.2
LINC00643-204ENST00000555934 PLPPR3Q6T4P5 718 aa21.87■■□□□ 1.09
LINC00643-204ENST00000555934 MSH5O43196 834 aa21.21■□□□□ 0.99
LINC00643-204ENST00000555934 POTEDQ86YR6 584 aa21.12■□□□□ 0.97
LINC00643-204ENST00000555934 PIAS4Q8N2W9 510 aaPredicted RBP20.97■□□□□ 0.95
LINC00643-204ENST00000555934 PPP6R1Q9UPN7 881 aa20.93■□□□□ 0.94
LINC00643-204ENST00000555934 ADRA2BP18089 450 aa20.81■□□□□ 0.92
LINC00643-204ENST00000555934 PPP4R3CPQ6ZMV5 832 aa19.29■□□□□ 0.68
LINC00643-204ENST00000555934 MAPK8IP2Q13387 824 aaPredicted RBP19.19■□□□□ 0.66
LINC00643-204ENST00000555934 DMRT2Q9Y5R5 561 aa19.16■□□□□ 0.66
LINC00643-204ENST00000555934 KCNA4P22459 653 aa19.07■□□□□ 0.64
LINC00643-204ENST00000555934 SCAF1Q9H7N4 1312 aaKnown RBP19.02■□□□□ 0.64
LINC00643-204ENST00000555934 NCBP3Q53F19 620 aaKnown RBP18.81■□□□□ 0.6
LINC00643-204ENST00000555934 CNKSR2Q8WXI2 1034 aa18.72■□□□□ 0.59
LINC00643-204ENST00000555934 NPM3O75607 178 aaKnown RBP18.55■□□□□ 0.56
LINC00643-204ENST00000555934 HOXD11P31277 338 aaPredicted RBP18.39■□□□□ 0.53
LINC00643-204ENST00000555934 RNF216Q9NWF9 866 aaPredicted RBP18.32■□□□□ 0.52
LINC00643-204ENST00000555934 EHMT2Q96KQ7 1210 aa18.29■□□□□ 0.52
LINC00643-204ENST00000555934 CACNB1Q02641 598 aaPredicted RBP18.28■□□□□ 0.52
LINC00643-204ENST00000555934 DCAF8L1A6NGE4 600 aa18.22■□□□□ 0.51
LINC00643-204ENST00000555934 SLC4A1APQ9BWU0 796 aaKnown RBP18.21■□□□□ 0.51
LINC00643-204ENST00000555934 RNF39Q9H2S5 420 aa18.1■□□□□ 0.49
LINC00643-204ENST00000555934 DNAJC5BQ9UF47 199 aa18■□□□□ 0.47
LINC00643-204ENST00000555934 C1QBPQ07021 282 aaKnown RBP17.81■□□□□ 0.44
LINC00643-204ENST00000555934 CSRNP3Q8WYN3 585 aa17.78■□□□□ 0.44
LINC00643-204ENST00000555934 ZBTB22O15209 634 aa17.56■□□□□ 0.4
LINC00643-204ENST00000555934 SLC4A2P04920 1241 aa17.49■□□□□ 0.39
LINC00643-204ENST00000555934 FOXD4L1Q9NU39 408 aa17.44■□□□□ 0.38
LINC00643-204ENST00000555934 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.39■□□□□ 0.37
LINC00643-204ENST00000555934 MYCNP04198 464 aaPredicted RBP17.14■□□□□ 0.33
LINC00643-204ENST00000555934 U3KPZ7 1027 aaPredicted RBP17.11■□□□□ 0.33
LINC00643-204ENST00000555934 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.92■□□□□ 0.3
LINC00643-204ENST00000555934 HNRNPUL2Q1KMD3 747 aaKnown RBP16.92■□□□□ 0.3
LINC00643-204ENST00000555934 SAMD1Q6SPF0 538 aaPredicted RBP16.87■□□□□ 0.29
LINC00643-204ENST00000555934 SPINK5Q9NQ38 1064 aaPredicted RBP16.87■□□□□ 0.29
LINC00643-204ENST00000555934 DSG3P32926 999 aa16.86■□□□□ 0.29
LINC00643-204ENST00000555934 ATXN8OSP0DMR3 200 aa16.82■□□□□ 0.28
LINC00643-204ENST00000555934 CAPN15O75808 1086 aa16.8■□□□□ 0.28
LINC00643-204ENST00000555934 APLP2Q06481 763 aa16.71■□□□□ 0.27
LINC00643-204ENST00000555934 ATF5Q9Y2D1 282 aaPredicted RBP16.67■□□□□ 0.26
LINC00643-204ENST00000555934 ZNF219Q9P2Y4 722 aaPredicted RBP16.49■□□□□ 0.23
LINC00643-204ENST00000555934 POTEHQ6S545 545 aa16.48■□□□□ 0.23
LINC00643-204ENST00000555934 TRHP20396 242 aaPredicted RBP16.47■□□□□ 0.23
LINC00643-204ENST00000555934 ABCB7O75027 752 aa16.38■□□□□ 0.21
LINC00643-204ENST00000555934 POLA2Q14181 598 aa16.22■□□□□ 0.19
LINC00643-204ENST00000555934 FKBP8Q14318 412 aa16.09■□□□□ 0.17
LINC00643-204ENST00000555934 RBM42Q9BTD8 480 aaKnown RBP16.06■□□□□ 0.16
LINC00643-204ENST00000555934 ZBTB12Q9Y330 459 aaPredicted RBP15.97■□□□□ 0.15
LINC00643-204ENST00000555934 FBLN2P98095 1184 aa15.96■□□□□ 0.15
LINC00643-204ENST00000555934 MKRN4PQ13434 485 aaPredicted RBP15.95■□□□□ 0.14
LINC00643-204ENST00000555934 CHRDL2Q6WN34 429 aa15.79■□□□□ 0.12
LINC00643-204ENST00000555934 OSCARQ8IYS5 282 aa15.68■□□□□ 0.1
LINC00643-204ENST00000555934 AKT1S1Q96B36 256 aa15.66■□□□□ 0.1
LINC00643-204ENST00000555934 SPDYE4A6NLX3 237 aa15.65■□□□□ 0.1
LINC00643-204ENST00000555934 SPDYE2BA6NHP3 402 aa15.56■□□□□ 0.08
LINC00643-204ENST00000555934 SPDYE6P0CI01 402 aa15.56■□□□□ 0.08
LINC00643-204ENST00000555934 SPDYE2Q495Y8 402 aa15.56■□□□□ 0.08
LINC00643-204ENST00000555934 REM2Q8IYK8 340 aaPredicted RBP15.5■□□□□ 0.07
LINC00643-204ENST00000555934 ZNF692Q9BU19 519 aaPredicted RBP15.5■□□□□ 0.07
LINC00643-204ENST00000555934 SSUH2Q9Y2M2 353 aa15.45■□□□□ 0.06
LINC00643-204ENST00000555934 PROM2Q8N271 834 aa15.43■□□□□ 0.06
LINC00643-204ENST00000555934 RTN4Q9NQC3 1192 aaKnown RBP15.4■□□□□ 0.06
LINC00643-204ENST00000555934 PIP4P2Q8N4L2 257 aa15.38■□□□□ 0.05
LINC00643-204ENST00000555934 SP7Q8TDD2 431 aaPredicted RBP15.34■□□□□ 0.05
LINC00643-204ENST00000555934 PITPNM1O00562 1244 aa15.33■□□□□ 0.04
LINC00643-204ENST00000555934 AMER1Q5JTC6 1135 aaPredicted RBP15.32■□□□□ 0.04
LINC00643-204ENST00000555934 FXR2P51116 673 aaKnown RBP eCLIP15.31■□□□□ 0.04
LINC00643-204ENST00000555934 PABPN1Q86U42 306 aaKnown RBP eCLIP15.31■□□□□ 0.04
LINC00643-204ENST00000555934 FBXO3Q9UK99 471 aa15.28■□□□□ 0.04
LINC00643-204ENST00000555934 VASPP50552 380 aaPredicted RBP15.13■□□□□ 0.01
LINC00643-204ENST00000555934 HAX1O00165 279 aa15.1■□□□□ 0.01
LINC00643-204ENST00000555934 STAG3Q9UJ98 1225 aa15.07■□□□□ 0
LINC00643-204ENST00000555934 SPDYE1Q8NFV5 336 aaPredicted RBP15.06■□□□□ 0
LINC00643-204ENST00000555934 EVX2Q03828 476 aa14.98□□□□□ -0.01
LINC00643-204ENST00000555934 IFNLR1Q8IU57 520 aaPredicted RBP14.98□□□□□ -0.01
LINC00643-204ENST00000555934 CLEC11AQ9Y240 323 aa14.98□□□□□ -0.01
LINC00643-204ENST00000555934 PRKAR2AP13861 404 aaKnown RBP14.91□□□□□ -0.02
LINC00643-204ENST00000555934 PRR29P0C7W0 189 aa14.86□□□□□ -0.03
LINC00643-204ENST00000555934 KLHL34Q8N239 644 aa14.84□□□□□ -0.03
LINC00643-204ENST00000555934 PLCD3Q8N3E9 789 aa14.82□□□□□ -0.04
LINC00643-204ENST00000555934 C19orf67A6NJJ6 358 aa14.81□□□□□ -0.04
LINC00643-204ENST00000555934 MIER1Q8N108 512 aa14.8□□□□□ -0.04
LINC00643-204ENST00000555934 PLEKHG5O94827 1062 aa14.74□□□□□ -0.05
LINC00643-204ENST00000555934 CREBZFQ9NS37 354 aa14.71□□□□□ -0.05
LINC00643-204ENST00000555934 SPOCK2Q92563 424 aa14.69□□□□□ -0.06
LINC00643-204ENST00000555934 CHADLQ6NUI6 762 aa14.67□□□□□ -0.06
LINC00643-204ENST00000555934 ZBTB47Q9UFB7 747 aaPredicted RBP14.65□□□□□ -0.06
LINC00643-204ENST00000555934 PKD2Q13563 968 aa14.63□□□□□ -0.07
LINC00643-204ENST00000555934 GABBR2O75899 941 aa14.62□□□□□ -0.07
LINC00643-204ENST00000555934 DCAF8L2P0C7V8 631 aa14.6□□□□□ -0.07
LINC00643-204ENST00000555934 MNX1P50219 401 aaPredicted RBP14.58□□□□□ -0.08
LINC00643-204ENST00000555934 SLC24A1O60721 1099 aa14.56□□□□□ -0.08
LINC00643-204ENST00000555934 ECM2O94769 699 aaPredicted RBP14.49□□□□□ -0.09
LINC00643-204ENST00000555934 CIZ1Q9ULV3 898 aaPredicted RBP14.48□□□□□ -0.09
LINC00643-204ENST00000555934 FARP1Q9Y4F1 1045 aaPredicted RBP14.48□□□□□ -0.09
LINC00643-204ENST00000555934 NPM1P06748 294 aaKnown RBP eCLIP14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms