RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 GUSBP11Q6P575 273 aa2.34□□□□□ -2.04
CSMD3-210ENST00000534172 Q8N2B8 174 aa2.34□□□□□ -2.04
CSMD3-210ENST00000534172 SLC25A29Q8N8R3 303 aa2.34□□□□□ -2.04
CSMD3-210ENST00000534172 DAND5Q8N907 189 aa2.34□□□□□ -2.04
CSMD3-210ENST00000534172 RNASE6Q93091 150 aaKnown RBP2.34□□□□□ -2.04
CSMD3-210ENST00000534172 NABP2Q9BQ15 211 aa2.34□□□□□ -2.04
CSMD3-210ENST00000534172 TMEM167BQ9NRX6 74 aa2.34□□□□□ -2.04
CSMD3-210ENST00000534172 PRO1854Q9UHT4 67 aa2.34□□□□□ -2.04
CSMD3-210ENST00000534172 ZFHX3Q15911 3703 aa2.34□□□□□ -2.04
CSMD3-210ENST00000534172 NBEAL1Q6ZS30 2694 aa2.34□□□□□ -2.04
CSMD3-210ENST00000534172 ASCC3Q8N3C0 2202 aaKnown RBP2.34□□□□□ -2.04
CSMD3-210ENST00000534172 TRAV3A0A0B4J244 114 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 HIGD1CA8MV81 97 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 ARL14EPLP0DKL9 152 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 PLNP26678 52 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 UBE2BP63146 152 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 RBM3P98179 157 aaKnown RBP2.33□□□□□ -2.04
CSMD3-210ENST00000534172 KISS1Q15726 138 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 Q6JHZ5 121 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 Q6ZR03 302 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 PHF5AQ7RTV0 110 aaKnown RBP2.33□□□□□ -2.04
CSMD3-210ENST00000534172 PFN4Q8NHR9 129 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 TAC3Q9UHF0 121 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 PLXNA2O75051 1894 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 COL12A1Q99715 3063 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 KIAA1549LQ6ZVL6 1849 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 CACNA1EQ15878 2313 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 APCP25054 2843 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 IGHV3-72A0A0B4J1Y9 119 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 IGHV1OR15-9A0A0B4J2B8 117 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 IGHV5-51A0A0C4DH38 117 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 IGKV1-6A0A0C4DH72 117 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 IQCF6A8MYZ5 107 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 H7BZZ5 65 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 TMEM256-PLSCR3K7ERE1 68 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 CKS2P33552 79 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 XCL1P47992 114 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 KLKP1Q107X0 134 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 LCA10Q71F78 164 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 SPTSSAQ969W0 71 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 TOMM6Q96B49 74 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 C8orf17Q9NRJ1 99 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 R4GMQ9 66 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 RTTNQ86VV8 2226 aa2.33□□□□□ -2.04
CSMD3-210ENST00000534172 A0A096LNJ9 63 aa2.32□□□□□ -2.04
CSMD3-210ENST00000534172 TRBV30A0A0K0K1B3 111 aa2.32□□□□□ -2.04
CSMD3-210ENST00000534172 FSTL3O95633 263 aa2.32□□□□□ -2.04
CSMD3-210ENST00000534172 IGHV3-11P01762 117 aa2.32□□□□□ -2.04
CSMD3-210ENST00000534172 INAFM2P0DMQ5 153 aa2.32□□□□□ -2.04
CSMD3-210ENST00000534172 ZNF22P17026 224 aaPredicted RBP2.32□□□□□ -2.04
CSMD3-210ENST00000534172 CMC4P56277 68 aaPredicted RBP2.32□□□□□ -2.04
CSMD3-210ENST00000534172 NDPQ00604 133 aa2.32□□□□□ -2.04
CSMD3-210ENST00000534172 MKXQ8IYA7 352 aa2.32□□□□□ -2.04
CSMD3-210ENST00000534172 ZNF714Q96N38 554 aa2.32□□□□□ -2.04
CSMD3-210ENST00000534172 LINC00588Q9Y4M8 146 aa2.32□□□□□ -2.04
CSMD3-210ENST00000534172 MYO7AQ13402 2215 aa2.32□□□□□ -2.04
CSMD3-210ENST00000534172 COL6A5A8TX70 2615 aa2.32□□□□□ -2.04
CSMD3-210ENST00000534172 IGHV1-45A0A0A0MS14 117 aa2.32□□□□□ -2.04
CSMD3-210ENST00000534172 TRAV13-2A0A0B4J235 113 aa2.32□□□□□ -2.04
CSMD3-210ENST00000534172 K7EMI3 77 aa2.32□□□□□ -2.04
CSMD3-210ENST00000534172 COX6CP09669 75 aa2.32□□□□□ -2.04
CSMD3-210ENST00000534172 CISD3P0C7P0 127 aa2.32□□□□□ -2.04
CSMD3-210ENST00000534172 TLX1NBP0CAT3 122 aa2.32□□□□□ -2.04
CSMD3-210ENST00000534172 FXYD4P59646 89 aa2.32□□□□□ -2.04
CSMD3-210ENST00000534172 ATP5EP2Q5VTU8 51 aa2.32□□□□□ -2.04
CSMD3-210ENST00000534172 FAM223AQ8IWN6 122 aa2.32□□□□□ -2.04
CSMD3-210ENST00000534172 SMCR5Q8TEV8 140 aa2.32□□□□□ -2.04
CSMD3-210ENST00000534172 RPP21Q9H633 154 aaKnown RBP2.32□□□□□ -2.04
CSMD3-210ENST00000534172 TIMM8BQ9Y5J9 83 aaPredicted RBP2.32□□□□□ -2.04
CSMD3-210ENST00000534172 CELSR2Q9HCU4 2923 aa2.32□□□□□ -2.04
CSMD3-210ENST00000534172 IGLV1-50A0A075B6I6 118 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.31□□□□□ -2.04
CSMD3-210ENST00000534172 IGHV5-10-1A0A0J9YXX1 117 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 A0A1B0GVX0 72 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 LINC01546A6NGU7 62 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 LST1O00453 97 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 ZNF861PO60384 105 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 HMGN2P05204 90 aaKnown RBP2.31□□□□□ -2.04
CSMD3-210ENST00000534172 SPANXN5Q5MJ07 72 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 LYPD5Q6UWN5 251 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 C16orf47Q6ZP98 133 aaPredicted RBP2.31□□□□□ -2.04
CSMD3-210ENST00000534172 ZNF818PQ6ZRF7 136 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 ZNF355PQ9NSJ1 428 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 U3KQK5 164 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 ARID1AO14497 2285 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 CELSR1Q9NYQ6 3014 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 CABIN1Q9Y6J0 2220 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 A8MUN3 132 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 IAPPP10997 89 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 PLGLAQ15195 96 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 RHOHQ15669 191 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 RNASE13Q5GAN3 156 aaKnown RBP2.31□□□□□ -2.04
CSMD3-210ENST00000534172 C7orf65Q6ZTY9 151 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 ORMDL3Q8N138 153 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 C15orf56Q8N910 161 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 CCL13Q99616 98 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 PROK2Q9HC23 129 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 MRPL35Q9NZE8 188 aaKnown RBP2.31□□□□□ -2.04
CSMD3-210ENST00000534172 LINC00474Q9P2X8 69 aa2.31□□□□□ -2.04
CSMD3-210ENST00000534172 TRAV7A0A075B6U4 112 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms