RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 MRPS36P82909 103 aaKnown RBP9.6□□□□□ -0.87
CCDC3-202ENST00000378839 Q6ZTI0 123 aa9.6□□□□□ -0.87
CCDC3-202ENST00000378839 Q6ZUT4 128 aa9.6□□□□□ -0.87
CCDC3-202ENST00000378839 CDIP1Q9H305 208 aa9.6□□□□□ -0.87
CCDC3-202ENST00000378839 C16orf95Q9H693 158 aa9.6□□□□□ -0.87
CCDC3-202ENST00000378839 C19orf73Q9NVV2 129 aa9.6□□□□□ -0.87
CCDC3-202ENST00000378839 TSPAN13O95857 204 aa9.59□□□□□ -0.87
CCDC3-202ENST00000378839 CFC1BP0CG36 223 aa9.59□□□□□ -0.87
CCDC3-202ENST00000378839 CFC1P0CG37 223 aa9.59□□□□□ -0.87
CCDC3-202ENST00000378839 SMCPP49901 116 aaPredicted RBP9.59□□□□□ -0.87
CCDC3-202ENST00000378839 TRGV1A0A0A0MS02 117 aa9.59□□□□□ -0.87
CCDC3-202ENST00000378839 SCGB1A1P11684 91 aa9.59□□□□□ -0.87
CCDC3-202ENST00000378839 LGALS3P17931 250 aaKnown RBP9.59□□□□□ -0.87
CCDC3-202ENST00000378839 KRTAP10-3P60369 221 aa9.59□□□□□ -0.87
CCDC3-202ENST00000378839 SMIM20Q8N5G0 67 aa9.59□□□□□ -0.87
CCDC3-202ENST00000378839 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.59□□□□□ -0.87
CCDC3-202ENST00000378839 PRO0461Q9UI25 63 aa9.59□□□□□ -0.87
CCDC3-202ENST00000378839 TMEM238LA0A1B0GVL6 79 aa9.58□□□□□ -0.88
CCDC3-202ENST00000378839 NDUFA11Q86Y39 141 aa9.58□□□□□ -0.88
CCDC3-202ENST00000378839 PLAC8L1A1L4L8 177 aa9.58□□□□□ -0.88
CCDC3-202ENST00000378839 IGHV3-30-3P0DP02 117 aa9.58□□□□□ -0.88
CCDC3-202ENST00000378839 SHISA2Q6UWI4 295 aa9.58□□□□□ -0.88
CCDC3-202ENST00000378839 FASNP49327 2511 aaKnown RBP9.58□□□□□ -0.88
CCDC3-202ENST00000378839 LINC00694P0DN24 101 aa9.57□□□□□ -0.88
CCDC3-202ENST00000378839 TEX29Q8N6K0 151 aa9.57□□□□□ -0.88
CCDC3-202ENST00000378839 NDUFA7O95182 113 aa9.56□□□□□ -0.88
CCDC3-202ENST00000378839 HERV-K104P63124 156 aa9.56□□□□□ -0.88
CCDC3-202ENST00000378839 NTM-AS1Q6ZSK4 140 aa9.56□□□□□ -0.88
CCDC3-202ENST00000378839 LITAFQ99732 161 aa9.56□□□□□ -0.88
CCDC3-202ENST00000378839 C1QTNF4Q9BXJ3 329 aa9.56□□□□□ -0.88
CCDC3-202ENST00000378839 IGLV1-51P01701 117 aa9.55□□□□□ -0.88
CCDC3-202ENST00000378839 RPL35AP18077 110 aaKnown RBP9.55□□□□□ -0.88
CCDC3-202ENST00000378839 DNAJC30Q96LL9 226 aa9.55□□□□□ -0.88
CCDC3-202ENST00000378839 COX6A2Q02221 97 aa9.55□□□□□ -0.88
CCDC3-202ENST00000378839 NOP10Q9NPE3 64 aaKnown RBP9.55□□□□□ -0.88
CCDC3-202ENST00000378839 A0A0J9YXY3 114 aa9.55□□□□□ -0.88
CCDC3-202ENST00000378839 ADAMTSL4-AS1Q5T5F5 129 aa9.55□□□□□ -0.88
CCDC3-202ENST00000378839 SPANXA1Q9NS26 97 aa9.55□□□□□ -0.88
CCDC3-202ENST00000378839 VWFP04275 2813 aa9.54□□□□□ -0.88
CCDC3-202ENST00000378839 MUSTN1Q8IVN3 82 aa9.54□□□□□ -0.88
CCDC3-202ENST00000378839 CSNK1G2-AS1Q8NCQ2 148 aa9.54□□□□□ -0.88
CCDC3-202ENST00000378839 A4D1N5 150 aa9.54□□□□□ -0.88
CCDC3-202ENST00000378839 HILS1P60008 231 aa9.54□□□□□ -0.88
CCDC3-202ENST00000378839 UBE2D3P61077 147 aa9.54□□□□□ -0.88
CCDC3-202ENST00000378839 UBE2D2P62837 147 aa9.54□□□□□ -0.88
CCDC3-202ENST00000378839 SPATA3Q8NHX4 192 aa9.54□□□□□ -0.88
CCDC3-202ENST00000378839 CARD19Q96LW7 228 aa9.54□□□□□ -0.88
CCDC3-202ENST00000378839 TIMM21Q9BVV7 248 aa9.54□□□□□ -0.88
CCDC3-202ENST00000378839 OTOGQ6ZRI0 2925 aa9.54□□□□□ -0.88
CCDC3-202ENST00000378839 TINCRA0A1B0GVN0 87 aa9.53□□□□□ -0.88
CCDC3-202ENST00000378839 A6NJY4 79 aa9.53□□□□□ -0.88
CCDC3-202ENST00000378839 TMEM263Q8WUH6 116 aaKnown RBP9.53□□□□□ -0.88
CCDC3-202ENST00000378839 CCDC179H3BU77 68 aa9.53□□□□□ -0.88
CCDC3-202ENST00000378839 IGHV1-58A0A0C4DH39 117 aa9.52□□□□□ -0.89
CCDC3-202ENST00000378839 LOC100131303A0A0U1RQF7 123 aa9.52□□□□□ -0.89
CCDC3-202ENST00000378839 VSIG2Q96IQ7 327 aa9.52□□□□□ -0.89
CCDC3-202ENST00000378839 CDKN2A-AS1Q9UH64 79 aa9.52□□□□□ -0.89
CCDC3-202ENST00000378839 TCL1BO95988 128 aa9.52□□□□□ -0.89
CCDC3-202ENST00000378839 Q1RN00 199 aa9.52□□□□□ -0.89
CCDC3-202ENST00000378839 ANKRD29Q8N6D5 301 aa9.52□□□□□ -0.89
CCDC3-202ENST00000378839 C9JAW5 83 aa9.51□□□□□ -0.89
CCDC3-202ENST00000378839 ZFAND6Q6FIF0 208 aa9.51□□□□□ -0.89
CCDC3-202ENST00000378839 HECTD1Q9ULT8 2610 aa9.51□□□□□ -0.89
CCDC3-202ENST00000378839 K7EQD1 137 aa9.51□□□□□ -0.89
CCDC3-202ENST00000378839 CRLF1O75462 422 aa9.51□□□□□ -0.89
CCDC3-202ENST00000378839 GAGE12JA6NER3 117 aa9.5□□□□□ -0.89
CCDC3-202ENST00000378839 GAGE4Q13068 117 aa9.5□□□□□ -0.89
CCDC3-202ENST00000378839 GAGE5Q13069 117 aa9.5□□□□□ -0.89
CCDC3-202ENST00000378839 SBSPONQ8IVN8 264 aa9.5□□□□□ -0.89
CCDC3-202ENST00000378839 TRAV4A0A0B4J268 109 aa9.5□□□□□ -0.89
CCDC3-202ENST00000378839 ERG28Q9UKR5 140 aa9.5□□□□□ -0.89
CCDC3-202ENST00000378839 GAGE7O76087 117 aa9.49□□□□□ -0.89
CCDC3-202ENST00000378839 GAGE12FP0CL80 117 aa9.49□□□□□ -0.89
CCDC3-202ENST00000378839 GAGE12GP0CL81 117 aa9.49□□□□□ -0.89
CCDC3-202ENST00000378839 GAGE12IP0CL82 117 aa9.49□□□□□ -0.89
CCDC3-202ENST00000378839 DAZ2Q13117 558 aaKnown RBP9.49□□□□□ -0.89
CCDC3-202ENST00000378839 PRO1854Q9UHT4 67 aa9.49□□□□□ -0.89
CCDC3-202ENST00000378839 NDUFA12Q9UI09 145 aa9.49□□□□□ -0.89
CCDC3-202ENST00000378839 NPC2P61916 151 aa9.49□□□□□ -0.89
CCDC3-202ENST00000378839 LINC00242Q5T6M2 205 aa9.49□□□□□ -0.89
CCDC3-202ENST00000378839 IGLV5-45A0A087WSX0 123 aa9.48□□□□□ -0.89
CCDC3-202ENST00000378839 GAGE6Q13070 117 aa9.48□□□□□ -0.89
CCDC3-202ENST00000378839 TMEM101Q96IK0 257 aa9.48□□□□□ -0.89
CCDC3-202ENST00000378839 IGHV3-33P01772 117 aa9.48□□□□□ -0.89
CCDC3-202ENST00000378839 TTC32Q5I0X7 151 aa9.48□□□□□ -0.89
CCDC3-202ENST00000378839 PPDPFLQ8WWR9 84 aa9.47□□□□□ -0.89
CCDC3-202ENST00000378839 LY6G6DO95868 133 aa9.47□□□□□ -0.89
CCDC3-202ENST00000378839 GAGE2BQ13066 116 aa9.47□□□□□ -0.89
CCDC3-202ENST00000378839 GAGE2EQ4V326 116 aa9.47□□□□□ -0.89
CCDC3-202ENST00000378839 GAGE2DQ9UEU5 116 aa9.47□□□□□ -0.89
CCDC3-202ENST00000378839 TENM1Q9UKZ4 2725 aa9.47□□□□□ -0.89
CCDC3-202ENST00000378839 SNCGO76070 127 aa9.47□□□□□ -0.89
CCDC3-202ENST00000378839 DAND5Q8N907 189 aa9.47□□□□□ -0.89
CCDC3-202ENST00000378839 NTN5Q8WTR8 489 aaPredicted RBP9.47□□□□□ -0.89
CCDC3-202ENST00000378839 RPL36AP83881 106 aaKnown RBP9.46□□□□□ -0.89
CCDC3-202ENST00000378839 RPL36ALQ969Q0 106 aaKnown RBP9.46□□□□□ -0.89
CCDC3-202ENST00000378839 FAM110AQ9BQ89 295 aa9.46□□□□□ -0.89
CCDC3-202ENST00000378839 TRRAPQ9Y4A5 3859 aa9.46□□□□□ -0.89
CCDC3-202ENST00000378839 TRBV10-1A0A0K0K1A3 114 aa9.46□□□□□ -0.9
CCDC3-202ENST00000378839 TIRAPP58753 221 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms