RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 RPL13AP40429 203 aaKnown RBP8.8□□□□□ -1
CLIP3-201ENST00000360535 COX6A2Q02221 97 aa8.8□□□□□ -1
CLIP3-201ENST00000360535 LITAFQ99732 161 aa8.79□□□□□ -1
CLIP3-201ENST00000360535 Q6YL49 198 aa8.79□□□□□ -1
CLIP3-201ENST00000360535 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.79□□□□□ -1
CLIP3-201ENST00000360535 COX6CP09669 75 aa8.79□□□□□ -1
CLIP3-201ENST00000360535 FLNAP21333 2647 aaKnown RBP8.78□□□□□ -1
CLIP3-201ENST00000360535 TMEM89A2RUT3 159 aa8.78□□□□□ -1
CLIP3-201ENST00000360535 CRLF1O75462 422 aa8.78□□□□□ -1
CLIP3-201ENST00000360535 Q9H8V8 135 aa8.78□□□□□ -1
CLIP3-201ENST00000360535 PYGO1Q9Y3Y4 419 aa8.78□□□□□ -1
CLIP3-201ENST00000360535 SNCGO76070 127 aa8.78□□□□□ -1
CLIP3-201ENST00000360535 LINC00694P0DN24 101 aa8.78□□□□□ -1
CLIP3-201ENST00000360535 SBSPONQ8IVN8 264 aa8.78□□□□□ -1
CLIP3-201ENST00000360535 PEMTQ9UBM1 199 aa8.78□□□□□ -1
CLIP3-201ENST00000360535 GAGE12JA6NER3 117 aa8.78□□□□□ -1
CLIP3-201ENST00000360535 GAGE4Q13068 117 aa8.78□□□□□ -1
CLIP3-201ENST00000360535 GAGE5Q13069 117 aa8.78□□□□□ -1
CLIP3-201ENST00000360535 GAGE6Q13070 117 aa8.78□□□□□ -1
CLIP3-201ENST00000360535 MEIG1Q5JSS6 88 aa8.78□□□□□ -1
CLIP3-201ENST00000360535 ZNF469Q96JG9 3925 aaPredicted RBP8.77□□□□□ -1.01
CLIP3-201ENST00000360535 TRAV8-4A0A0B4J246 113 aa8.77□□□□□ -1.01
CLIP3-201ENST00000360535 TRAV4A0A0B4J268 109 aa8.77□□□□□ -1.01
CLIP3-201ENST00000360535 INSP01308 110 aa8.77□□□□□ -1.01
CLIP3-201ENST00000360535 DSCR9P59020 149 aa8.77□□□□□ -1.01
CLIP3-201ENST00000360535 MIAQ16674 131 aa8.77□□□□□ -1.01
CLIP3-201ENST00000360535 TTC32Q5I0X7 151 aa8.77□□□□□ -1.01
CLIP3-201ENST00000360535 STHQ8IWL8 128 aa8.77□□□□□ -1.01
CLIP3-201ENST00000360535 SMIM20Q8N5G0 67 aa8.77□□□□□ -1.01
CLIP3-201ENST00000360535 TINCRA0A1B0GVN0 87 aa8.77□□□□□ -1.01
CLIP3-201ENST00000360535 TMEM262E9PQX1 116 aa8.77□□□□□ -1.01
CLIP3-201ENST00000360535 GAGE2BQ13066 116 aa8.77□□□□□ -1.01
CLIP3-201ENST00000360535 GAGE2EQ4V326 116 aa8.77□□□□□ -1.01
CLIP3-201ENST00000360535 C3orf56Q8N813 242 aa8.77□□□□□ -1.01
CLIP3-201ENST00000360535 TMEM101Q96IK0 257 aa8.77□□□□□ -1.01
CLIP3-201ENST00000360535 GAGE2DQ9UEU5 116 aa8.77□□□□□ -1.01
CLIP3-201ENST00000360535 IGHV4-31P0DP07 118 aa8.76□□□□□ -1.01
CLIP3-201ENST00000360535 UBE2WQ96B02 151 aa8.76□□□□□ -1.01
CLIP3-201ENST00000360535 ITPR3Q14573 2671 aa8.76□□□□□ -1.01
CLIP3-201ENST00000360535 SPANXA1Q9NS26 97 aa8.76□□□□□ -1.01
CLIP3-201ENST00000360535 Q6ZTI0 123 aa8.76□□□□□ -1.01
CLIP3-201ENST00000360535 NBEAL2Q6ZNJ1 2754 aa8.76□□□□□ -1.01
CLIP3-201ENST00000360535 SETXQ7Z333 2677 aaKnown RBP8.75□□□□□ -1.01
CLIP3-201ENST00000360535 TRBV10-2A0A0K0K1G8 114 aa8.75□□□□□ -1.01
CLIP3-201ENST00000360535 H7C423 109 aa8.75□□□□□ -1.01
CLIP3-201ENST00000360535 TRBV30A0A0K0K1B3 111 aa8.75□□□□□ -1.01
CLIP3-201ENST00000360535 DEFB114Q30KQ6 69 aa8.75□□□□□ -1.01
CLIP3-201ENST00000360535 C11orf72Q8NBR9 251 aa8.75□□□□□ -1.01
CLIP3-201ENST00000360535 CR1P17927 2039 aa8.75□□□□□ -1.01
CLIP3-201ENST00000360535 CIRBPQ14011 172 aaKnown RBP8.75□□□□□ -1.01
CLIP3-201ENST00000360535 Q96MF0 132 aa8.75□□□□□ -1.01
CLIP3-201ENST00000360535 TOMM7Q9P0U1 55 aa8.75□□□□□ -1.01
CLIP3-201ENST00000360535 PRIMA1Q86XR5 153 aa8.74□□□□□ -1.01
CLIP3-201ENST00000360535 C15orf53Q8NAA6 179 aa8.74□□□□□ -1.01
CLIP3-201ENST00000360535 J3QLI3 93 aa8.74□□□□□ -1.01
CLIP3-201ENST00000360535 PLA2G2AP14555 144 aa8.74□□□□□ -1.01
CLIP3-201ENST00000360535 WFDC10AQ9H1F0 79 aa8.74□□□□□ -1.01
CLIP3-201ENST00000360535 AKAP9Q99996 3911 aa8.74□□□□□ -1.01
CLIP3-201ENST00000360535 CCDC179H3BU77 68 aa8.73□□□□□ -1.01
CLIP3-201ENST00000360535 HERV-K104P63124 156 aa8.73□□□□□ -1.01
CLIP3-201ENST00000360535 NOP10Q9NPE3 64 aaKnown RBP8.73□□□□□ -1.01
CLIP3-201ENST00000360535 A0A096LNT2 108 aa8.73□□□□□ -1.01
CLIP3-201ENST00000360535 RPL35AP18077 110 aaKnown RBP8.73□□□□□ -1.01
CLIP3-201ENST00000360535 ODF3L2Q3SX64 289 aa8.73□□□□□ -1.01
CLIP3-201ENST00000360535 SPANXDQ9BXN6 97 aa8.72□□□□□ -1.01
CLIP3-201ENST00000360535 SPANXCQ9NY87 97 aa8.72□□□□□ -1.01
CLIP3-201ENST00000360535 APCP25054 2843 aa8.72□□□□□ -1.01
CLIP3-201ENST00000360535 LINC00242Q5T6M2 205 aa8.72□□□□□ -1.01
CLIP3-201ENST00000360535 SHISA2Q6UWI4 295 aa8.72□□□□□ -1.01
CLIP3-201ENST00000360535 YAE1D1Q9NRH1 226 aa8.72□□□□□ -1.01
CLIP3-201ENST00000360535 LOC100131303A0A0U1RQF7 123 aa8.72□□□□□ -1.01
CLIP3-201ENST00000360535 RPL36AP83881 106 aaKnown RBP8.72□□□□□ -1.01
CLIP3-201ENST00000360535 PIK3CD-AS1Q5SR53 167 aa8.72□□□□□ -1.01
CLIP3-201ENST00000360535 RPL36ALQ969Q0 106 aaKnown RBP8.72□□□□□ -1.01
CLIP3-201ENST00000360535 GAGE7O76087 117 aa8.71□□□□□ -1.01
CLIP3-201ENST00000360535 GAGE12FP0CL80 117 aa8.71□□□□□ -1.01
CLIP3-201ENST00000360535 GAGE12GP0CL81 117 aa8.71□□□□□ -1.01
CLIP3-201ENST00000360535 GAGE12IP0CL82 117 aa8.71□□□□□ -1.01
CLIP3-201ENST00000360535 C1orf158Q8N1D5 194 aa8.71□□□□□ -1.01
CLIP3-201ENST00000360535 GCN1Q92616 2671 aaKnown RBP8.71□□□□□ -1.01
CLIP3-201ENST00000360535 TRGV2A0A075B6R0 118 aa8.71□□□□□ -1.02
CLIP3-201ENST00000360535 LINC00308Q8TCZ7 52 aa8.71□□□□□ -1.02
CLIP3-201ENST00000360535 UBE2L6O14933 153 aa8.7□□□□□ -1.02
CLIP3-201ENST00000360535 RS1O15537 224 aa8.7□□□□□ -1.02
CLIP3-201ENST00000360535 HIVEP2P31629 2446 aa8.7□□□□□ -1.02
CLIP3-201ENST00000360535 NDUFV3P56181 108 aaKnown RBP8.7□□□□□ -1.02
CLIP3-201ENST00000360535 Q8N2B8 174 aa8.7□□□□□ -1.02
CLIP3-201ENST00000360535 C4orf3Q8WVX3 66 aa8.7□□□□□ -1.02
CLIP3-201ENST00000360535 CITED2Q99967 270 aaPredicted RBP8.7□□□□□ -1.02
CLIP3-201ENST00000360535 FASNP49327 2511 aaKnown RBP8.7□□□□□ -1.02
CLIP3-201ENST00000360535 NTM-AS1Q6ZSK4 140 aa8.7□□□□□ -1.02
CLIP3-201ENST00000360535 C11orf68Q9H3H3 251 aaKnown RBP8.69□□□□□ -1.02
CLIP3-201ENST00000360535 NDUFA1O15239 70 aa8.69□□□□□ -1.02
CLIP3-201ENST00000360535 HERVK_113P63121 156 aa8.69□□□□□ -1.02
CLIP3-201ENST00000360535 SOSTDC1Q6X4U4 206 aa8.69□□□□□ -1.02
CLIP3-201ENST00000360535 DNAJC30Q96LL9 226 aa8.69□□□□□ -1.02
CLIP3-201ENST00000360535 BBC3Q96PG8 261 aaPredicted RBP8.69□□□□□ -1.02
CLIP3-201ENST00000360535 IFITM1P13164 125 aa8.69□□□□□ -1.02
CLIP3-201ENST00000360535 LST1O00453 97 aa8.68□□□□□ -1.02
CLIP3-201ENST00000360535 HIST2H2BCQ6DN03 193 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms