RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 SPATA3Q8NHX4 192 aa10.09□□□□□ -0.79
TRIM4-201ENST00000349062 I3L3M4 83 aa10.09□□□□□ -0.79
TRIM4-201ENST00000349062 DEFB130BP0DP73 79 aa10.09□□□□□ -0.79
TRIM4-201ENST00000349062 DEFB130AP0DP74 79 aa10.09□□□□□ -0.79
TRIM4-201ENST00000349062 ODF3Q96PU9 254 aa10.09□□□□□ -0.79
TRIM4-201ENST00000349062 GAGE12JA6NER3 117 aa10.09□□□□□ -0.79
TRIM4-201ENST00000349062 GAGE4Q13068 117 aa10.09□□□□□ -0.79
TRIM4-201ENST00000349062 GAGE5Q13069 117 aa10.09□□□□□ -0.79
TRIM4-201ENST00000349062 TEN1Q86WV5 123 aa10.09□□□□□ -0.79
TRIM4-201ENST00000349062 TRAV12-1A0A0B4J245 112 aa10.08□□□□□ -0.8
TRIM4-201ENST00000349062 NXPH4O95158 308 aa10.08□□□□□ -0.8
TRIM4-201ENST00000349062 RNASE1P07998 156 aaKnown RBP10.08□□□□□ -0.8
TRIM4-201ENST00000349062 PMVKQ15126 192 aa10.08□□□□□ -0.8
TRIM4-201ENST00000349062 LYRM7Q5U5X0 104 aa10.08□□□□□ -0.8
TRIM4-201ENST00000349062 C1orf158Q8N1D5 194 aa10.08□□□□□ -0.8
TRIM4-201ENST00000349062 TRRAPQ9Y4A5 3859 aa10.08□□□□□ -0.8
TRIM4-201ENST00000349062 LINC00482Q8N8I6 264 aa10.08□□□□□ -0.8
TRIM4-201ENST00000349062 CFC1BP0CG36 223 aa10.08□□□□□ -0.8
TRIM4-201ENST00000349062 CFC1P0CG37 223 aa10.08□□□□□ -0.8
TRIM4-201ENST00000349062 ZFAND6Q6FIF0 208 aa10.08□□□□□ -0.8
TRIM4-201ENST00000349062 ANK3Q12955 4377 aaKnown RBP10.07□□□□□ -0.8
TRIM4-201ENST00000349062 A0A0U1RRA0 63 aa10.07□□□□□ -0.8
TRIM4-201ENST00000349062 A4D1N5 150 aa10.07□□□□□ -0.8
TRIM4-201ENST00000349062 A0A0J9YY99 117 aa10.07□□□□□ -0.8
TRIM4-201ENST00000349062 LINC01546A6NGU7 62 aa10.07□□□□□ -0.8
TRIM4-201ENST00000349062 A8MZ25 164 aa10.07□□□□□ -0.8
TRIM4-201ENST00000349062 TSPEAR-AS2P59090 65 aa10.07□□□□□ -0.8
TRIM4-201ENST00000349062 HILS1P60008 231 aa10.07□□□□□ -0.8
TRIM4-201ENST00000349062 SLC25A20O43772 301 aa10.06□□□□□ -0.8
TRIM4-201ENST00000349062 PRO1854Q9UHT4 67 aa10.06□□□□□ -0.8
TRIM4-201ENST00000349062 NTN5Q8WTR8 489 aaPredicted RBP10.06□□□□□ -0.8
TRIM4-201ENST00000349062 A0A096LPF7 62 aa10.06□□□□□ -0.8
TRIM4-201ENST00000349062 TRBV27A0A0K0K1C4 114 aa10.06□□□□□ -0.8
TRIM4-201ENST00000349062 IGIPA6NJ69 53 aa10.06□□□□□ -0.8
TRIM4-201ENST00000349062 KRTAP10-3P60369 221 aa10.06□□□□□ -0.8
TRIM4-201ENST00000349062 LOC100131303A0A0U1RQF7 123 aa10.05□□□□□ -0.8
TRIM4-201ENST00000349062 J3QQQ9 107 aa10.05□□□□□ -0.8
TRIM4-201ENST00000349062 SNCGO76070 127 aa10.05□□□□□ -0.8
TRIM4-201ENST00000349062 COL6A5A8TX70 2615 aa10.05□□□□□ -0.8
TRIM4-201ENST00000349062 TRAV8-3A0A0A6YYJ7 113 aa10.05□□□□□ -0.8
TRIM4-201ENST00000349062 NDUFA7O95182 113 aa10.05□□□□□ -0.8
TRIM4-201ENST00000349062 UBE2D1P51668 147 aa10.05□□□□□ -0.8
TRIM4-201ENST00000349062 TTC32Q5I0X7 151 aa10.05□□□□□ -0.8
TRIM4-201ENST00000349062 C10orf126Q8N4M7 172 aa10.05□□□□□ -0.8
TRIM4-201ENST00000349062 POM121L12Q8N7R1 296 aa10.05□□□□□ -0.8
TRIM4-201ENST00000349062 C20orf203Q8NBC4 194 aa10.05□□□□□ -0.8
TRIM4-201ENST00000349062 ERG28Q9UKR5 140 aa10.05□□□□□ -0.8
TRIM4-201ENST00000349062 GAGE2BQ13066 116 aa10.04□□□□□ -0.8
TRIM4-201ENST00000349062 GAGE2EQ4V326 116 aa10.04□□□□□ -0.8
TRIM4-201ENST00000349062 GAGE2DQ9UEU5 116 aa10.04□□□□□ -0.8
TRIM4-201ENST00000349062 C3orf56Q8N813 242 aa10.03□□□□□ -0.8
TRIM4-201ENST00000349062 IGLV4-69A0A075B6H9 119 aa10.03□□□□□ -0.8
TRIM4-201ENST00000349062 TRAV13-1A0A0B4J241 112 aa10.03□□□□□ -0.8
TRIM4-201ENST00000349062 C11orf72Q8NBR9 251 aa10.03□□□□□ -0.8
TRIM4-201ENST00000349062 ZNF625Q96I27 306 aaPredicted RBP10.03□□□□□ -0.8
TRIM4-201ENST00000349062 LINC00467Q9BRT7 94 aa10.03□□□□□ -0.8
TRIM4-201ENST00000349062 MUSTN1Q8IVN3 82 aa10.03□□□□□ -0.8
TRIM4-201ENST00000349062 TRGV4A0A0C4DH28 118 aa10.01□□□□□ -0.81
TRIM4-201ENST00000349062 IGLV4-3A0A075B6K6 122 aa10.01□□□□□ -0.81
TRIM4-201ENST00000349062 TRAV4A0A0B4J268 109 aa10.01□□□□□ -0.81
TRIM4-201ENST00000349062 TEX49A0A1B0GTD5 131 aa10.01□□□□□ -0.81
TRIM4-201ENST00000349062 IGHV3-30P01768 117 aa10.01□□□□□ -0.81
TRIM4-201ENST00000349062 IGHV3-30-5P0DP03 117 aa10.01□□□□□ -0.81
TRIM4-201ENST00000349062 UBE2D3P61077 147 aa10.01□□□□□ -0.81
TRIM4-201ENST00000349062 UBE2D2P62837 147 aa10.01□□□□□ -0.81
TRIM4-201ENST00000349062 NBEAL1Q6ZS30 2694 aa10□□□□□ -0.81
TRIM4-201ENST00000349062 CRLF1O75462 422 aa10□□□□□ -0.81
TRIM4-201ENST00000349062 ATP6V0E2Q8NHE4 81 aa10□□□□□ -0.81
TRIM4-201ENST00000349062 TMEM141Q96I45 108 aa10□□□□□ -0.81
TRIM4-201ENST00000349062 FBN1P35555 2871 aaKnown RBP10□□□□□ -0.81
TRIM4-201ENST00000349062 TRBV6-5A0A0K0K1A5 114 aa9.99□□□□□ -0.81
TRIM4-201ENST00000349062 SLC25A29Q8N8R3 303 aa9.99□□□□□ -0.81
TRIM4-201ENST00000349062 HTN3P15516 51 aa9.99□□□□□ -0.81
TRIM4-201ENST00000349062 TMEM262E9PQX1 116 aa9.98□□□□□ -0.81
TRIM4-201ENST00000349062 IGLV1-51P01701 117 aa9.98□□□□□ -0.81
TRIM4-201ENST00000349062 PAPPA-AS1Q5QFB9 102 aa9.98□□□□□ -0.81
TRIM4-201ENST00000349062 GAGE6Q13070 117 aa9.98□□□□□ -0.81
TRIM4-201ENST00000349062 TIMM17AQ99595 171 aa9.98□□□□□ -0.81
TRIM4-201ENST00000349062 LINC00694P0DN24 101 aa9.98□□□□□ -0.81
TRIM4-201ENST00000349062 TRAV25A0A0B4J276 109 aa9.97□□□□□ -0.81
TRIM4-201ENST00000349062 DAND5Q8N907 189 aa9.97□□□□□ -0.81
TRIM4-201ENST00000349062 RPL36AP83881 106 aaKnown RBP9.97□□□□□ -0.81
TRIM4-201ENST00000349062 RHOHQ15669 191 aa9.97□□□□□ -0.81
TRIM4-201ENST00000349062 DEFB135Q30KP9 77 aa9.97□□□□□ -0.81
TRIM4-201ENST00000349062 RPL36ALQ969Q0 106 aaKnown RBP9.97□□□□□ -0.81
TRIM4-201ENST00000349062 GIG44P09565 113 aaPredicted RBP9.97□□□□□ -0.81
TRIM4-201ENST00000349062 TRAV8-4A0A0B4J246 113 aa9.96□□□□□ -0.81
TRIM4-201ENST00000349062 CCDC179H3BU77 68 aa9.96□□□□□ -0.82
TRIM4-201ENST00000349062 C2orf82Q6UX34 121 aa9.96□□□□□ -0.82
TRIM4-201ENST00000349062 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.96□□□□□ -0.82
TRIM4-201ENST00000349062 C15orf53Q8NAA6 179 aa9.96□□□□□ -0.82
TRIM4-201ENST00000349062 PKD1L1Q8TDX9 2849 aa9.96□□□□□ -0.82
TRIM4-201ENST00000349062 RHODO00212 210 aa9.95□□□□□ -0.82
TRIM4-201ENST00000349062 IGHV3-33P01772 117 aa9.95□□□□□ -0.82
TRIM4-201ENST00000349062 ZNF22P17026 224 aaPredicted RBP9.95□□□□□ -0.82
TRIM4-201ENST00000349062 TMEM263Q8WUH6 116 aaKnown RBP9.95□□□□□ -0.82
TRIM4-201ENST00000349062 UBE2L6O14933 153 aa9.95□□□□□ -0.82
TRIM4-201ENST00000349062 CLPSL2Q6UWE3 100 aa9.95□□□□□ -0.82
TRIM4-201ENST00000349062 C16orf95Q9H693 158 aa9.95□□□□□ -0.82
TRIM4-201ENST00000349062 LINC01620Q4KN68 170 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms